genome.fa.s7066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007066.1 Hibiscus syriacus cultivar Beakdansim tig00018355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60868

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5331--5378	6	8.0	6	100	0	96	33	33	16	16	1.92
8529--8598	36	1.9	36	91	0	113	37	15	7	40	1.75
10279--10316	20	1.9	20	94	0	67	34	15	21	28	1.94
16183--16225	3	14.3	3	90	9	70	67	0	0	32	0.91
17927--17959	3	11.3	3	93	6	59	66	0	0	33	0.92
19085--19126	15	2.8	15	82	7	50	47	9	0	42	1.36
19304--19336	13	2.5	13	90	9	50	36	18	3	42	1.66
22015--22063	2	24.5	2	100	0	98	48	0	0	51	1.00
23199--23267	33	2.1	33	83	0	84	57	4	1	36	1.27
24967--25011	18	2.5	18	96	0	81	11	22	42	24	1.86
25119--25149	3	10.3	3	100	0	62	67	0	0	32	0.91
25463--25511	24	2.0	24	100	0	98	24	26	16	32	1.96
25421--25552	66	2.0	66	89	0	201	31	21	16	30	1.96
25487--25653	42	4.0	42	88	0	226	34	21	16	27	1.94
25712--26032	42	7.8	42	67	20	196	30	22	17	29	1.97
25835--25899	22	3.0	22	71	8	71	29	26	16	27	1.97
25658--26025	122	3.1	121	89	4	543	29	22	17	30	1.96
26166--26266	42	2.4	41	83	3	130	32	23	21	21	1.98
26197--26267	20	3.5	20	67	16	56	35	22	21	21	1.96
32336--32371	6	6.0	6	93	0	54	44	16	22	16	1.86
34552--34620	33	2.1	33	83	0	84	57	4	1	36	1.27
36322--36366	18	2.5	18	96	0	81	11	22	42	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38320--38771	47	9.6	47	85	2	584	22	22	12	43	1.86
38340--38432	27	3.7	27	67	19	83	20	21	12	45	1.84
38312--38771	141	3.3	141	88	0	652	22	22	11	43	1.86
38607--38678	20	3.2	20	69	23	63	20	27	12	38	1.89
38799--38906	45	2.4	45	87	0	162	29	26	10	33	1.89
43374--43443	29	2.4	29	97	0	131	22	22	5	48	1.72
43921--44360	47	9.4	47	89	0	648	21	22	12	43	1.86
44069--44241	20	7.6	20	67	24	85	21	24	12	41	1.88
44351--44418	34	2.0	34	82	5	84	27	22	10	39	1.86
44345--44551	78	2.6	79	88	2	301	27	23	11	38	1.89
44955--45006	20	2.5	20	81	6	59	26	23	15	34	1.94
44995--45032	19	2.1	19	90	5	60	23	21	15	39	1.92
44968--45175	94	2.2	96	82	4	253	25	22	15	36	1.94
53908--53961	23	2.4	22	81	9	65	62	7	0	29	1.22
56013--56064	26	2.0	26	85	3	70	28	0	5	65	1.16
56158--56208	18	2.9	18	82	5	61	60	3	3	31	1.33

Tables:   1

The End!