genome.fa.s707.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000707.1 Hibiscus syriacus cultivar Beakdansim tig00001375_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67584

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1008--1035	2	14.0	2	100	0	56	50	0	0	50	1.00
5880--5924	22	2.0	23	86	8	65	51	0	0	48	1.00
5151--7655	787	3.2	787	98	0	4787	32	14	12	40	1.84
6662--6705	22	2.0	23	86	4	63	45	0	0	54	0.99
6647--6712	31	2.2	31	82	17	86	48	0	0	51	1.00
6654--6712	31	1.9	32	86	13	88	45	0	0	54	0.99
7450--7493	22	2.0	23	86	4	63	45	0	0	54	0.99
7435--7500	31	2.2	31	82	17	86	48	0	0	51	1.00
7442--7500	31	1.9	32	86	13	88	45	0	0	54	0.99
8729--8848	35	3.3	36	88	5	172	42	20	5	31	1.75
8780--8840	21	3.2	21	65	29	64	42	21	4	31	1.74
8747--8875	35	3.6	36	85	9	142	41	18	6	32	1.77
12412--12448	17	2.2	17	95	0	65	27	16	27	29	1.97
13367--13485	35	3.3	36	88	5	170	42	20	5	31	1.73
13418--13478	21	3.2	21	65	29	64	42	21	4	31	1.74
13385--13513	35	3.6	37	85	9	153	42	18	6	32	1.75
14616--14645	4	7.8	4	92	7	53	0	23	0	76	0.78
15364--15399	17	2.1	18	89	5	56	44	0	0	55	0.99
16951--17010	3	20.0	3	80	13	70	68	0	1	30	0.99
16951--17009	21	3.0	21	80	14	81	67	0	1	30	1.00
16951--17010	24	2.5	24	88	0	93	68	0	1	30	0.99
17360--17912	123	4.5	125	87	4	755	26	19	14	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17360--17912	245	2.2	249	90	2	864	26	19	14	40	1.89
18349--18408	22	2.7	22	92	0	102	36	11	16	35	1.85
19768--19999	75	3.1	75	89	0	340	30	22	14	32	1.94
27181--27216	17	2.1	18	89	5	56	44	0	0	55	0.99
28562--28625	3	22.0	3	87	6	96	71	0	0	28	0.86
32458--33225	422	1.8	417	87	3	1128	38	8	8	44	1.65
36622--36686	31	2.1	31	91	0	103	53	6	6	33	1.50
36684--37051	196	1.9	196	82	1	468	47	7	4	40	1.52
55809--55861	23	2.3	23	80	6	63	45	16	24	13	1.83
56730--57006	137	2.0	140	97	2	524	40	5	5	48	1.50
58414--58529	59	2.0	60	86	5	164	31	9	18	40	1.83
58415--58540	60	2.1	59	84	7	157	31	11	18	38	1.86
61528--61569	22	1.9	22	90	9	68	30	16	4	47	1.67
64482--64810	158	2.1	156	88	3	482	41	13	17	27	1.87
64787--64833	20	2.4	19	82	10	67	53	10	17	19	1.72
64796--64838	20	2.3	19	88	11	63	51	11	16	20	1.75
66983--67047	21	3.1	21	93	0	103	41	10	30	16	1.83

Tables:   1

The End!