genome.fa.s7070.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007070.1 Hibiscus syriacus cultivar Beakdansim tig00018398_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124905

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1864--1888	12	2.1	12	100	0	50	0	28	0	72	0.86
2061--2106	24	2.0	23	87	12	67	36	21	15	26	1.93
2779--2988	20	10.5	20	84	5	228	20	18	25	36	1.95
2975--3057	21	4.0	21	73	6	78	25	16	24	33	1.96
3219--3330	29	3.7	30	73	11	86	44	8	9	37	1.67
8646--8951	149	2.1	149	99	0	603	33	20	16	29	1.95
27766--27814	21	2.3	22	86	10	66	18	16	38	26	1.91
27962--28007	20	2.3	20	92	0	74	15	15	23	45	1.84
28015--28072	20	2.9	20	76	7	64	20	13	31	34	1.92
32290--32339	23	2.2	23	92	0	82	32	16	22	30	1.95
36359--36704	108	3.2	108	90	0	539	29	28	13	28	1.94
36359--36704	55	6.4	55	88	2	520	29	28	13	28	1.94
36326--36995	55	12.6	54	81	9	373	25	27	16	31	1.97
36359--36753	108	3.6	108	86	6	496	28	27	14	29	1.95
36666--37211	51	10.4	50	77	11	404	23	24	18	33	1.96
36676--37211	105	5.1	104	80	9	427	23	24	18	33	1.97
36707--37222	156	3.3	152	78	7	536	23	24	18	34	1.96
36759--37222	105	4.5	104	83	8	543	23	24	18	33	1.97
37628--37783	36	4.3	36	90	0	222	19	19	24	35	1.95
46831--46861	2	15.5	2	100	0	62	51	0	0	48	1.00
48894--49027	15	8.5	15	75	9	106	0	28	14	55	1.45
48935--49038	18	6.1	18	67	15	69	0	30	14	54	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48897--49029	33	4.1	33	83	2	164	0	28	15	55	1.45
50974--51287	152	2.1	153	91	1	513	38	11	14	35	1.83
51478--51506	14	2.1	14	100	0	58	13	31	6	48	1.69
55947--55993	18	2.6	18	96	0	85	17	8	4	70	1.29
56905--57051	70	2.1	70	96	0	267	44	17	10	27	1.82
57820--57885	28	2.4	28	100	0	132	59	6	3	31	1.37
64214--64247	16	2.0	18	88	11	54	26	2	5	64	1.30
65352--65427	35	2.2	35	90	0	116	36	1	22	39	1.63
69567--69926	184	2.0	184	100	0	720	15	36	11	37	1.83
79462--79556	47	2.0	47	93	0	163	36	9	14	38	1.79
79789--79818	15	2.0	15	93	0	51	10	66	16	6	1.41
81263--81300	2	19.0	2	100	0	76	50	0	0	50	1.00
82953--83014	23	2.7	23	87	0	97	54	12	16	16	1.71
83685--83723	16	2.5	16	87	4	53	25	0	5	69	1.09
83685--83728	15	2.9	15	83	9	54	22	0	4	72	1.02
84381--84428	18	2.7	18	80	9	62	41	0	4	54	1.20
85287--85339	18	2.9	18	79	20	58	35	5	0	58	1.22
89984--90036	22	2.4	22	77	0	61	37	1	1	58	1.20
108021--108068	25	1.9	25	91	0	78	29	18	14	37	1.91
113338--113489	74	2.0	76	82	5	184	44	14	18	23	1.86
117847--117911	18	3.6	18	95	0	112	24	16	32	26	1.96
117846--117922	18	4.3	17	88	8	100	22	18	31	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117894--117950	28	2.0	28	90	6	89	17	21	33	28	1.96
120300--120369	34	2.1	34	100	0	140	45	20	14	20	1.85

Tables:   1

The End!