genome.fa.s7071.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007071.1 Hibiscus syriacus cultivar Beakdansim tig00018399_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144035

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607--715	33	3.2	34	84	3	139	36	0	23	38	1.62
1483--1528	18	2.7	17	86	6	67	34	6	30	28	1.82
2226--2674	217	2.0	216	86	7	629	37	28	11	23	1.89
2636--3023	187	2.1	181	87	7	559	36	26	12	25	1.91
3350--3410	28	2.2	28	77	19	65	47	3	3	45	1.35
11776--11815	3	13.3	3	100	0	80	32	0	0	67	0.91
12009--12083	31	2.4	32	80	8	82	41	6	22	29	1.79
12374--12398	3	8.3	3	100	0	50	32	0	0	68	0.90
14759--14799	20	2.0	20	95	0	73	39	12	24	24	1.89
17695--17736	21	2.0	21	81	9	50	26	9	21	42	1.83
19241--19293	27	2.0	27	92	0	88	35	18	20	24	1.95
19360--19445	42	2.0	42	86	4	120	44	15	11	29	1.81
22287--22343	24	2.4	24	100	0	114	19	15	21	43	1.87
25497--25524	2	14.0	2	100	0	56	50	0	0	50	1.00
25881--25940	31	2.0	30	86	3	84	41	8	21	28	1.82
26249--26325	31	2.5	31	86	0	100	48	12	11	27	1.76
31086--31235	75	2.0	75	100	0	300	42	18	16	22	1.88
44691--44730	19	2.0	21	85	9	57	57	5	0	37	1.21
44880--44919	14	3.1	13	82	10	55	60	0	0	40	0.97
46346--46422	3	25.0	3	78	5	73	57	0	2	40	1.13
46346--46426	19	4.2	19	81	6	81	58	0	2	39	1.12
46692--47337	113	5.6	112	82	8	755	27	19	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46693--47359	237	2.9	223	83	6	748	28	19	13	38	1.90
48084--48549	83	5.6	83	93	2	778	37	22	14	26	1.92
49523--49560	13	3.0	13	88	3	51	2	18	0	78	0.86
49524--49563	12	3.2	12	89	3	53	2	15	0	82	0.77
60898--60941	12	3.4	12	79	14	52	56	0	2	40	1.11
60898--60943	13	3.5	13	80	11	58	56	0	2	41	1.11
62354--62422	3	23.0	3	80	11	79	62	0	1	36	1.04
62366--62433	12	6.0	11	73	20	52	64	0	0	35	0.94
62352--62433	15	5.5	15	71	23	57	62	0	1	36	1.03
63573--63640	3	22.0	3	84	11	84	32	1	1	64	1.11
63564--63642	35	2.3	34	85	10	99	32	1	1	64	1.09
67766--67833	30	2.3	30	84	0	82	42	19	5	32	1.75
74827--74889	8	7.8	8	72	22	51	73	0	15	11	1.10
74848--74891	23	2.0	23	90	4	72	77	0	13	9	0.99
74817--74890	30	2.5	28	76	8	76	74	0	16	9	1.07
75820--76259	133	3.3	134	85	4	552	26	30	18	25	1.98
76182--76298	43	2.8	40	71	7	110	23	31	17	26	1.97
76447--76501	3	18.0	3	83	10	67	30	1	1	65	1.13
76438--76501	22	3.0	21	82	11	76	31	1	1	65	1.11
77382--77410	2	15.0	2	92	7	51	48	0	0	51	1.00
89240--89267	14	2.0	14	100	0	56	64	0	0	35	0.94
103698--103733	3	12.0	3	100	0	72	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106581--106610	15	1.9	16	93	6	53	23	6	6	63	1.43
106651--106685	4	8.8	4	100	0	70	25	0	22	51	1.48
109478--109591	60	1.9	60	81	3	140	31	17	14	36	1.89
110792--110833	21	2.0	22	85	4	59	35	19	19	26	1.95
113974--114037	25	2.7	24	88	9	87	45	1	1	51	1.20
120310--120358	25	2.0	25	95	0	89	44	20	4	30	1.70
125544--125615	21	3.6	20	77	17	78	54	0	5	40	1.24
128988--129059	29	2.4	30	79	6	85	40	5	26	27	1.78
129749--129876	62	2.1	63	94	2	224	49	5	17	27	1.69

Tables:   1

The End!