genome.fa.s7076.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007076.1 Hibiscus syriacus cultivar Beakdansim tig00018465_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140777

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2239--2287	23	2.1	23	100	0	98	18	22	38	20	1.93
10567--10593	4	6.8	4	100	0	54	48	25	0	25	1.52
11371--11399	2	14.5	2	100	0	58	51	48	0	0	1.00
16162--16222	23	2.7	23	89	0	95	26	27	26	19	1.99
16238--16455	103	2.1	103	100	0	436	36	23	13	26	1.92
20077--20174	40	2.5	40	98	0	187	54	8	10	27	1.62
29196--29228	17	1.9	17	88	11	50	33	15	12	39	1.84
31905--32004	23	4.3	23	75	1	83	43	22	13	22	1.87
31965--32015	12	4.2	12	78	9	59	37	21	15	25	1.93
31959--32005	24	2.0	24	91	0	76	44	19	10	25	1.82
41201--41242	21	2.0	21	85	0	57	28	23	14	33	1.94
45528--45575	25	1.9	25	95	0	87	29	20	29	20	1.98
49213--49240	2	14.0	2	100	0	56	50	0	0	50	1.00
49974--50031	29	2.0	29	93	0	98	13	34	29	22	1.93
50088--50141	10	5.4	10	75	16	58	24	35	27	12	1.92
50088--50141	20	2.7	20	91	0	90	24	35	27	12	1.92
50088--50200	10	10.7	10	66	11	55	25	28	34	11	1.91
50124--50212	33	2.7	33	85	3	108	26	24	38	10	1.87
50216--50271	29	1.9	29	92	0	94	21	30	35	12	1.90
50330--50415	29	3.0	29	98	0	163	19	30	34	15	1.93
51288--51341	21	2.6	21	75	0	54	50	25	1	22	1.59
53894--53971	37	2.1	37	95	0	138	38	5	3	52	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54892--54938	2	23.5	2	100	0	94	51	0	0	48	1.00
61510--61881	179	2.1	179	100	0	744	29	17	17	35	1.93
62494--63089	191	3.1	191	77	3	464	27	22	16	33	1.96
63290--63359	18	3.7	18	67	25	54	55	1	1	41	1.17
64935--65234	121	2.5	122	85	5	403	45	10	13	30	1.77
65603--65660	28	2.1	28	90	0	89	44	5	12	37	1.64
69072--69227	60	2.6	59	85	2	195	41	3	23	31	1.72
69078--69258	60	3.0	60	75	10	165	41	4	21	32	1.73
69466--69499	3	11.0	3	93	6	59	64	0	0	35	0.94
69988--70051	29	2.2	29	83	5	76	37	17	12	32	1.87
71763--71859	37	2.6	37	81	0	113	42	12	10	35	1.77
72370--72546	64	2.8	62	71	17	141	24	7	2	65	1.30
72581--72613	2	16.5	2	100	0	66	48	0	0	51	1.00
73141--73221	26	3.0	26	73	20	69	13	7	2	76	1.10
79867--79917	25	2.0	25	92	7	86	23	11	15	49	1.78
82674--82704	7	4.4	7	100	0	62	29	29	12	29	1.94
83432--83502	3	23.7	3	100	0	142	32	0	0	67	0.91
87666--87705	2	20.0	2	100	0	80	50	0	0	50	1.00
97622--97646	4	6.2	4	100	0	50	48	0	0	52	1.00
99778--99820	3	14.3	3	95	0	77	32	2	0	65	1.06
103746--103790	12	3.9	11	85	8	63	8	15	44	31	1.77
103750--103803	23	2.3	23	83	3	63	11	18	48	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104897--104935	20	2.0	20	84	0	51	12	23	23	41	1.88
104979--105154	41	4.3	41	81	2	214	23	17	17	42	1.89
105420--105481	20	3.0	20	76	4	70	41	17	24	16	1.89
105428--105622	63	3.1	63	90	0	302	33	20	21	24	1.97
105420--105676	104	2.5	105	83	6	328	35	18	22	23	1.96
105420--105668	41	6.0	41	78	6	234	35	19	22	23	1.96
105707--105768	21	3.0	21	95	0	106	30	20	22	25	1.98
106668--106767	53	1.9	51	82	11	123	40	7	1	52	1.35
106866--106999	51	2.6	52	77	3	137	27	8	11	52	1.67
108184--108211	2	14.0	2	100	0	56	50	0	0	50	1.00
115465--115521	30	1.9	30	96	0	105	49	14	3	33	1.60
117798--117843	20	2.3	21	92	7	78	50	4	0	45	1.21
119432--119470	20	1.9	21	89	5	62	66	2	5	25	1.25
128247--128271	4	6.2	4	100	0	50	72	0	0	28	0.86
128395--128427	16	1.9	17	88	11	50	60	3	0	36	1.12
128389--128446	17	3.8	16	72	20	52	63	1	0	34	1.04
128388--128445	29	2.0	30	83	10	75	63	1	0	34	1.04
128410--128453	22	2.0	23	86	13	65	65	2	0	31	1.05
128382--128479	39	2.5	39	81	14	105	64	4	1	30	1.19
128385--128479	40	2.4	38	80	16	97	63	4	1	31	1.21
129221--129251	16	1.9	16	100	0	62	35	6	6	51	1.53
131592--131626	16	2.3	15	90	5	52	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131673--131702	12	2.6	11	90	10	51	40	0	0	60	0.97
131676--131701	12	2.2	12	100	0	52	46	0	0	53	1.00
131564--131773	113	1.8	114	85	7	300	54	4	1	39	1.31
131881--131908	2	14.0	2	100	0	56	50	0	0	50	1.00
133407--133464	26	2.2	26	100	0	116	37	6	18	36	1.78
134272--134378	31	3.4	31	65	14	92	38	26	14	21	1.91
134265--134401	64	2.2	64	98	1	267	36	26	13	23	1.92
135511--135553	2	21.5	2	100	0	86	48	0	0	51	1.00
135872--135919	16	2.9	16	78	6	51	54	2	0	43	1.12

Tables:   1

The End!