genome.fa.s7077.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007077.1 Hibiscus syriacus cultivar Beakdansim tig00018469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62047

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8953--8986	17	2.1	16	88	5	50	76	0	8	14	1.01
15913--15970	18	3.1	19	75	9	73	20	20	29	29	1.98
17083--17151	23	3.0	23	89	0	111	26	24	27	21	1.99
18129--18171	21	2.0	21	91	8	70	32	18	25	23	1.97
19247--19340	14	6.4	14	66	9	53	47	9	8	34	1.66
19247--19330	30	2.8	30	79	0	105	47	9	9	33	1.68
20519--20617	26	3.6	26	70	18	76	54	1	1	43	1.13
23206--23268	31	2.0	31	90	0	99	42	4	11	41	1.61
25974--26023	22	2.3	21	86	3	64	46	2	2	50	1.24
25980--26023	21	2.0	22	86	4	63	45	2	0	52	1.13
33911--34078	68	2.4	69	89	5	243	19	4	30	46	1.68
39689--39754	27	2.4	27	84	0	87	18	15	40	25	1.89
39750--39898	72	2.1	72	87	0	208	17	19	40	22	1.91
39765--39904	72	1.9	72	91	0	226	17	20	39	23	1.92
42456--42710	48	5.3	48	73	8	187	22	11	34	30	1.90
42474--42715	96	2.5	96	80	5	249	21	11	35	30	1.90
42840--43067	96	2.4	96	84	0	285	25	12	35	26	1.91
42807--43067	48	5.4	48	72	7	170	25	11	36	26	1.91
42907--43106	96	2.1	96	82	3	233	29	11	36	23	1.90
44804--44849	22	2.1	22	91	0	74	26	19	23	30	1.98
45594--46911	48	27.8	47	69	10	530	25	11	35	27	1.91
45927--45972	24	1.9	24	86	8	67	15	17	34	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45931--45989	24	2.5	24	75	10	66	18	18	33	28	1.95
45931--46114	95	1.9	96	80	1	217	25	13	36	25	1.92
46134--46211	24	3.2	24	71	7	77	24	8	34	32	1.86
46482--46558	40	1.9	40	86	5	111	20	11	41	25	1.86
46535--46716	95	1.9	96	84	3	242	26	12	32	28	1.92
46871--46974	48	2.2	48	85	0	145	25	12	31	29	1.93
47655--47713	31	1.9	31	83	10	77	44	10	3	42	1.55
50511--50592	24	3.4	24	75	9	87	24	9	37	28	1.87
50497--52045	48	32.1	48	77	4	1081	22	13	37	26	1.91
50877--50952	24	3.2	24	71	14	75	21	15	35	27	1.94
50892--50968	24	3.2	24	75	14	95	23	9	38	28	1.85
51024--51113	24	3.8	24	66	14	60	18	13	37	30	1.89
51093--51264	24	7.2	24	60	7	71	20	13	40	25	1.90
51310--51384	24	3.1	23	64	21	55	26	10	38	24	1.88
51549--51659	54	2.1	54	87	0	159	19	12	38	28	1.89
51638--51714	24	3.2	24	70	7	66	20	14	37	27	1.91
51651--51726	24	3.2	24	75	0	80	19	15	35	28	1.93
51842--52017	24	7.3	24	66	14	103	14	15	39	30	1.87

Tables:   1

The End!