Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01007078.1 Hibiscus syriacus cultivar Beakdansim tig00018474_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 224527
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


File 2 of 2

Found at i:210167 original size:20 final size:20

Alignment explanation


    Indices: 210135--210184  Score: 75
    Period size: 20  Copynumber: 2.5  Consensus size: 20

     210125 ATTTTTAATT

                                
     210135 TAAAAATAA-TTATAAAATA
          1 TAAAAATAATTTATAAAATA

                            **  
     210154 TAAAAATAATTTATAATTTA
          1 TAAAAATAATTTATAAAATA

                       
     210174 TAAAAATAATT
          1 TAAAAATAATT

     210185 AGGAAAAAAG


Statistics
Matches: 28,  Mismatches: 2, Indels: 1
        0.90            0.06        0.03

Matches are distributed among these distances:
  19    9  0.32
  20   19  0.68

ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38


Consensus pattern (20 bp):   
TAAAAATAATTTATAAAATA

Done.