genome.fa.s7079.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007079.1 Hibiscus syriacus cultivar Beakdansim tig00018475_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62616

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30830--30934	37	2.8	37	82	0	129	41	14	13	30	1.84
31276--31326	18	2.8	17	88	8	66	27	3	1	66	1.20
31836--31865	2	15.0	2	92	0	51	46	0	0	53	1.00
37164--37700	183	2.9	183	96	0	968	27	20	21	31	1.98
38857--38970	36	3.2	34	71	9	86	25	16	14	43	1.85
38841--39024	72	2.5	75	84	8	220	27	17	13	41	1.87
39018--39370	104	3.6	99	80	10	320	28	20	13	37	1.90
39342--39391	21	2.4	21	100	0	100	22	22	14	42	1.88
39591--40221	105	6.0	105	89	3	907	33	26	17	21	1.96
40764--40868	37	2.8	37	83	0	129	41	15	14	28	1.86
41209--41259	18	2.8	17	88	8	66	27	3	1	66	1.20
41755--41790	2	18.0	2	100	0	72	50	0	0	50	1.00
41831--41870	20	1.9	22	85	10	57	17	10	0	72	1.11
44941--45151	45	4.8	45	88	2	277	40	7	22	29	1.81
49085--49295	101	2.1	101	85	1	289	36	12	16	34	1.86
51812--51936	44	2.8	45	72	4	117	21	16	22	39	1.92
52009--52149	51	2.8	51	81	7	164	26	19	14	39	1.91
52830--53024	82	2.4	82	84	5	243	36	19	21	22	1.95
52893--53046	82	1.9	81	83	4	193	42	18	18	19	1.89
52949--54099	164	7.0	163	79	7	561	35	21	16	26	1.94
53070--54153	82	13.3	82	84	3	1213	34	21	16	27	1.95
53066--54149	571	1.9	573	85	2	1516	34	22	16	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52876--54308	328	4.4	326	80	5	987	35	21	16	26	1.94
53115--54383	571	2.2	571	80	4	1429	35	21	16	26	1.94
58030--58072	2	21.5	2	100	0	86	48	0	0	51	1.00
58171--58313	14	9.9	14	67	24	57	24	4	3	67	1.24
58171--58322	32	4.6	32	70	15	96	24	3	3	68	1.22

Tables:   1

The End!