genome.fa.s708.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000708.1 Hibiscus syriacus cultivar Beakdansim tig00001376_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81210

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13253--13300	21	2.3	21	85	3	71	43	20	10	25	1.83
13847--13921	35	2.1	35	92	0	123	36	1	18	44	1.59
22313--22351	2	19.5	2	100	0	78	51	0	0	48	1.00
23084--23571	131	3.7	131	88	1	658	40	16	10	32	1.83
24062--24143	15	5.5	15	86	2	112	36	7	20	35	1.81
24056--24143	45	2.0	44	90	2	140	38	6	21	32	1.80
24062--24143	30	2.8	30	92	1	130	36	7	20	35	1.81
24126--24175	20	2.5	20	100	0	100	40	10	16	34	1.81
24374--24475	30	3.5	28	78	17	93	51	1	0	45	1.19
24373--24519	28	4.9	28	70	15	82	51	1	1	46	1.18
24460--24523	19	3.8	16	70	22	58	50	0	1	48	1.10
24377--24538	31	5.4	30	74	16	99	52	1	1	45	1.16
24492--24537	10	4.5	10	78	21	51	58	0	0	41	0.98
24493--24549	22	2.6	22	84	10	73	54	0	0	45	0.99
24500--24549	21	2.3	21	86	10	66	54	0	0	46	1.00
24736--24855	42	2.9	42	92	0	204	43	18	20	18	1.88
25518--25545	14	2.0	14	100	0	56	0	28	0	71	0.86
26915--27133	43	5.1	43	92	0	312	27	21	23	27	1.99
27033--27208	43	4.1	43	84	5	135	28	22	20	28	1.99
26983--27183	86	2.3	86	84	3	262	27	22	22	27	1.99
26910--27183	129	2.1	129	79	4	293	29	21	22	26	1.99
27336--27394	21	2.8	21	84	0	73	55	20	5	18	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28264--28379	36	3.2	36	96	0	205	37	17	12	31	1.88
32022--32301	133	2.1	133	89	3	416	48	18	13	18	1.81
32911--33299	41	9.5	39	76	11	289	35	20	18	25	1.95
32916--33299	82	4.7	83	82	4	458	34	20	19	26	1.96
32899--33299	165	2.4	165	83	5	508	34	19	19	25	1.96
32897--33328	82	5.3	81	79	6	342	34	19	18	27	1.95
35781--35810	4	7.5	4	100	0	60	76	0	0	23	0.78
35773--35816	16	3.1	14	82	17	56	75	0	0	25	0.81
37681--39400	247	7.0	248	81	5	1568	25	19	23	30	1.98
37676--39443	327	5.4	328	80	5	1763	26	19	23	30	1.98
37701--39401	410	4.1	411	83	4	1839	25	19	23	30	1.98
37681--39442	657	2.7	656	86	2	2320	26	19	23	30	1.98
37681--39443	164	10.7	163	81	5	1649	26	19	23	30	1.98
40581--40763	95	1.9	95	93	2	314	30	19	19	31	1.96
44619--44685	9	7.3	9	70	20	50	71	0	5	22	1.07
44734--44787	5	10.6	5	86	11	65	81	0	3	14	0.82
44739--44789	25	2.0	25	96	0	93	80	0	1	17	0.81
44745--44796	15	3.5	15	82	12	63	78	0	0	21	0.74
50118--50153	14	2.6	14	95	0	63	69	16	8	5	1.33
50146--50252	24	4.6	23	77	8	72	56	17	14	11	1.67
50169--50252	23	3.6	23	79	6	71	58	17	13	10	1.63
50466--50495	14	2.1	14	100	0	60	60	13	13	13	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51769--51832	27	2.4	27	89	0	101	23	23	26	26	2.00
51981--52035	23	2.5	22	82	5	74	21	23	23	30	1.99
51984--52035	11	4.6	11	76	4	50	23	23	23	30	1.99
52898--52931	10	3.4	10	95	0	59	52	26	11	8	1.67
58626--58671	22	2.0	23	87	8	67	52	6	2	39	1.40
59373--59411	21	2.0	21	85	14	57	64	10	0	25	1.25
61435--61605	88	1.9	90	86	5	249	25	15	32	26	1.95
61520--61834	132	2.4	132	89	2	481	24	19	32	23	1.97
62008--62090	30	2.7	31	83	8	100	40	14	16	27	1.88
63686--63746	23	2.6	23	76	19	72	3	13	6	77	1.09
63678--63746	23	2.9	23	78	8	68	2	14	5	76	1.08
68702--68742	18	2.3	18	95	0	73	14	9	34	41	1.79

Tables:   1

The End!