Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007080.1 Hibiscus syriacus cultivar Beakdansim tig00018477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94650

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7691--7723
15
2.2
15
94
0
57
45
0
0
54
0.99
21051--21138
45
2.0
45
84
4
115
29
21
23
25
1.99
22222--22265
21
2.1
21
86
0
61
38
15
38
6
1.75
23805--23885
23
3.6
22
73
8
74
27
23
23
25
2.00
25633--25677
21
2.1
21
87
0
63
31
28
24
15
1.96
26022--26066
22
2.0
22
82
8
54
28
4
15
51
1.63
26153--26189
2
18.5
2
100
0
74
51
0
0
48
1.00
27024--27124
31
3.2
31
78
13
125
29
18
17
33
1.95
27120--27205
30
2.9
30
91
1
129
19
22
26
31
1.98
33091--33166
37
2.1
37
92
0
125
35
19
21
23
1.96
39883--39932
23
2.2
23
96
0
91
40
22
4
34
1.72
41289--41402
60
1.9
60
81
0
138
39
16
10
33
1.83
44420--44458
2
19.5
2
100
0
78
51
0
0
48
1.00
47759--47808
23
2.2
22
83
13
66
54
8
20
18
1.68
48907--48965
29
2.0
29
83
6
73
37
6
20
35
1.79
52895--52970
40
2.0
38
82
10
93
50
11
13
25
1.75
53156--53235
16
5.1
16
72
17
78
25
10
6
58
1.53
53156--53235
31
2.6
31
97
0
151
25
10
6
58
1.53
53186--53236
15
3.3
15
71
13
50
25
9
7
56
1.58
53754--53789
11
3.0
13
80
19
51
27
5
0
66
1.13
53754--53797
21
2.0
22
82
8
54
31
4
0
63
1.14
54512--54538
7
3.9
7
100
0
54
14
0
0
85
0.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56751--56809
31
1.9
31
96
3
111
35
3
0
61
1.13
56789--56879
38
2.4
38
81
5
103
40
3
2
53
1.29
56835--56876
18
2.6
16
85
11
50
42
0
2
54
1.13
56888--56928
18
2.1
21
86
13
61
56
0
9
34
1.32
61581--61638
17
3.1
19
82
12
75
41
1
1
55
1.20
62073--62125
26
2.1
25
86
6
72
54
0
0
45
0.99
62078--62131
26
2.1
26
82
3
65
57
0
0
42
0.98
69582--69620
19
2.1
19
95
0
69
20
38
15
25
1.92
69519--69727
65
3.2
63
83
8
217
29
25
17
27
1.97
69568--69728
65
2.5
65
86
3
218
30
26
16
27
1.96
69519--69748
64
3.6
64
81
6
225
29
26
17
26
1.98
75517--75572
22
2.7
21
83
10
62
30
23
17
28
1.97
77104--77147
21
2.1
21
86
0
61
9
36
15
38
1.80
78141--78167
8
3.4
8
100
0
54
25
22
25
25
2.00
78191--78229
19
2.1
19
95
0
69
20
38
15
25
1.92
78149--78337
65
2.9
64
81
10
215
30
24
16
28
1.97
78177--78337
65
2.5
64
86
3
216
30
26
16
27
1.96
78177--78357
64
2.8
64
83
2
220
29
26
17
27
1.97
80196--80229
17
2.0
17
100
0
68
52
5
0
41
1.25
83149--83205
26
2.2
26
96
0
105
8
45
31
14
1.75
92920--92954
16
2.2
16
100
0
70
20
5
37
37
1.76

Tables:   1

The End!