Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007082.1 Hibiscus syriacus cultivar Beakdansim tig00018480_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59047

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6979--7008
7
4.3
7
100
0
60
73
0
26
0
0.84
7422--7451
12
2.4
12
94
5
51
80
0
0
20
0.72
9580--9605
6
4.3
6
100
0
52
46
0
0
53
1.00
13777--13836
28
2.1
28
100
0
120
25
3
55
16
1.57
24602--24640
17
2.3
17
95
0
69
38
2
17
41
1.64
24733--24775
15
2.9
15
83
10
54
46
2
0
51
1.13
30683--30715
16
2.1
16
100
0
66
57
24
12
6
1.57
30751--30804
10
5.1
10
74
12
54
59
14
11
14
1.62
35409--35455
20
2.3
20
92
7
78
27
23
6
42
1.78
35520--35544
13
1.9
13
100
0
50
12
0
8
80
0.92
35747--35915
60
2.8
60
89
2
243
37
13
11
37
1.81
36732--36954
74
3.0
74
99
0
437
43
4
7
44
1.50
38221--38270
25
2.0
25
100
0
100
56
8
4
32
1.47
39784--40089
122
2.5
122
83
3
386
48
7
9
34
1.64
39870--40098
120
1.9
120
85
2
318
51
7
6
34
1.57
47249--47318
29
2.4
29
85
4
88
17
32
27
22
1.96
47377--47461
29
2.9
29
89
6
136
15
35
29
20
1.93
47479--47537
23
2.6
23
86
5
75
13
35
23
27
1.92
47526--47577
20
2.6
20
93
0
86
13
30
28
26
1.94
49361--49539
21
8.6
21
79
4
193
31
24
20
24
1.98
49375--49565
62
3.1
62
86
5
253
31
21
20
25
1.98
49445--49705
62
4.1
62
73
15
217
29
20
22
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49548--49755
21
9.6
21
73
13
154
25
21
25
27
1.99
49687--49780
42
2.2
41
85
7
127
21
21
26
30
1.98
50377--50413
6
6.5
6
93
6
60
0
16
48
35
1.46
50412--50447
6
6.0
6
93
0
63
52
0
13
33
1.41
52220--52283
23
2.7
24
70
20
62
35
3
0
60
1.12
52521--52550
2
15.0
2
100
0
60
50
0
0
50
1.00
53154--53302
60
2.5
60
83
2
174
42
5
20
31
1.75
53206--53332
60
2.1
60
77
2
130
44
5
18
32
1.72
55229--55255
13
2.1
13
100
0
54
37
14
25
22
1.93
56394--56496
54
1.9
53
88
5
154
38
21
17
22
1.93

Tables:   1

The End!