genome.fa.s7083.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007083.1 Hibiscus syriacus cultivar Beakdansim tig00018481_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59778

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65--103	19	2.1	19	100	0	78	35	28	15	20	1.93
1712--1757	2	23.0	2	100	0	92	50	0	0	50	1.00
1903--1933	13	2.3	14	94	5	55	51	3	0	45	1.17
6274--6314	14	3.0	14	82	3	57	17	14	17	51	1.77
9115--9152	20	1.9	20	88	0	58	21	26	10	42	1.85
9192--9262	20	3.5	20	100	0	142	19	23	11	45	1.83
9380--9417	20	1.9	20	84	10	51	50	0	0	50	1.00
16750--16836	33	2.7	33	85	3	115	14	22	12	49	1.78
18134--18189	2	28.5	2	96	3	105	51	0	0	48	1.00
20242--20401	60	2.7	59	79	9	146	30	22	5	41	1.76
24708--24762	3	17.7	3	92	7	92	63	0	36	0	0.95
24708--24775	25	2.8	25	93	2	111	60	0	39	0	0.97
25744--25776	17	1.9	17	88	11	50	78	0	9	12	0.95
25748--25789	19	2.2	19	86	4	57	80	2	4	11	0.95
27583--27618	2	18.0	2	100	0	72	50	0	0	50	1.00
29098--29258	61	2.5	67	77	15	192	49	27	0	22	1.50
29140--29226	20	4.3	19	67	11	57	47	29	0	22	1.52
29132--29284	61	2.5	60	81	8	166	49	26	0	24	1.50
29260--29291	14	2.3	15	84	15	50	50	15	0	34	1.45
29449--29557	57	1.9	57	92	0	182	51	9	8	31	1.63
32777--32812	16	2.3	16	90	4	56	55	0	0	44	0.99
33972--34089	51	2.3	51	86	5	175	44	13	14	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34408--34490	37	2.4	34	80	17	91	10	10	34	43	1.75
34656--34717	28	2.2	28	94	2	108	16	9	32	41	1.80
35295--35341	18	2.8	17	83	6	60	29	25	6	38	1.81
36977--37202	84	2.7	82	80	4	247	30	14	21	34	1.93
36957--37109	41	3.7	39	71	15	112	28	16	20	35	1.94
37333--37454	41	3.0	40	79	11	115	40	17	17	25	1.90
38757--38781	13	1.9	13	100	0	50	36	16	24	24	1.94
42732--42909	43	4.1	42	79	4	142	33	25	20	20	1.97
42830--42974	76	1.9	76	89	0	227	33	24	19	22	1.97
42937--43035	43	2.2	44	80	3	110	29	27	16	27	1.97
46553--46604	20	2.6	20	96	0	95	38	26	13	21	1.90
46594--46692	21	4.8	20	72	6	72	36	23	19	21	1.95
46659--46852	20	9.6	20	81	5	221	35	25	19	19	1.95
46659--46852	60	3.2	60	83	0	253	35	25	19	19	1.95
47234--47304	33	2.2	33	92	0	115	11	22	18	47	1.80
47425--47479	14	3.6	14	73	21	56	40	23	27	9	1.85
47425--47495	33	2.2	33	92	0	115	42	25	23	8	1.82
47491--47588	19	5.7	19	70	22	81	10	24	22	42	1.84
47513--47602	14	5.7	14	74	23	81	8	25	23	42	1.83
47496--47610	33	3.5	33	95	0	212	9	24	20	45	1.81
49309--49688	185	2.0	186	99	0	753	22	12	18	46	1.83
49309--49688	93	4.1	93	99	0	753	22	12	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49732--49860	19	7.3	19	75	17	125	45	28	17	8	1.77
49768--49860	33	2.8	32	91	4	150	46	27	18	7	1.76
49732--49860	52	2.5	52	74	14	140	45	28	17	8	1.77
49856--49990	19	7.6	19	75	16	128	11	19	23	45	1.82
49878--49934	14	3.7	14	77	20	60	10	21	22	45	1.82
49861--49953	33	2.8	33	95	0	168	10	20	21	47	1.80
51803--51875	38	1.9	38	97	0	137	28	1	16	53	1.51
51798--51862	19	3.4	19	64	8	51	24	1	15	58	1.46
51857--51892	14	2.6	14	95	0	63	33	0	22	44	1.53
51999--52100	19	5.6	19	84	13	151	44	17	23	14	1.86
52129--52435	19	17.4	19	79	16	358	14	20	18	47	1.83
52129--52368	71	3.4	71	83	11	355	15	20	17	47	1.83
52097--52435	142	2.4	136	89	6	504	14	20	18	46	1.83
52129--52407	52	5.2	52	90	6	354	14	20	17	47	1.83
54733--54757	13	1.9	13	100	0	50	0	24	0	76	0.80
54929--54975	24	2.0	24	87	8	69	38	21	14	25	1.92
55647--56012	20	18.5	20	85	6	440	19	18	26	34	1.95
57046--57103	30	2.0	29	90	10	91	12	34	31	22	1.91
57161--57209	23	2.1	23	100	0	98	8	40	24	26	1.83
57165--57215	23	2.2	23	92	0	84	9	37	25	27	1.87
57212--57266	24	2.3	24	84	6	76	12	27	36	23	1.91
57212--57263	14	4.0	14	73	19	58	11	28	36	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57306--57420	29	4.0	29	93	1	187	22	26	36	13	1.92
58114--58157	23	2.0	24	82	13	58	47	0	4	47	1.22
58089--58147	28	2.0	28	87	6	82	45	0	5	49	1.24
58733--58804	31	2.3	31	83	4	83	65	2	5	26	1.28

Tables:   1

The End!