genome.fa.s7085.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007085.1 Hibiscus syriacus cultivar Beakdansim tig00018484_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155070

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2194--2371	80	2.2	79	92	4	286	29	14	20	35	1.92
3841--3877	2	18.5	2	100	0	74	48	0	0	51	1.00
8244--8276	14	2.3	15	89	5	50	69	0	12	18	1.18
30695--30740	2	24.0	2	79	16	53	2	50	0	47	1.13
30695--30740	9	4.9	9	84	10	65	2	50	0	47	1.13
30695--30740	20	2.3	20	92	0	74	2	50	0	47	1.13
34833--34886	26	2.0	27	85	3	74	46	11	7	35	1.67
41140--41174	17	2.1	17	100	0	70	42	0	11	45	1.40
41906--41932	14	1.9	14	100	0	54	81	3	0	14	0.82
44383--44454	2	36.0	2	82	0	81	40	0	58	1	1.07
44383--44450	28	2.4	28	90	0	100	39	0	58	1	1.07
46143--46180	16	2.2	18	90	9	62	55	0	0	44	0.99
50003--50040	19	2.0	19	94	0	67	28	10	23	36	1.88
51728--51792	32	2.1	32	91	2	105	52	12	9	26	1.68
65778--65812	2	17.5	2	100	0	70	51	0	0	48	1.00
66442--66475	16	2.1	16	88	0	50	50	0	2	47	1.16
66517--66550	16	2.0	18	88	11	54	26	2	5	64	1.30
66674--67037	114	3.1	114	67	18	334	43	8	3	44	1.51
66585--67051	233	2.0	233	98	0	907	44	8	4	43	1.53
67255--67502	130	1.9	130	94	0	442	35	12	14	36	1.85
67899--67974	35	2.2	35	90	0	116	38	0	21	40	1.53
74775--74828	19	2.8	18	81	13	54	11	31	24	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74795--74839	19	2.3	20	88	3	65	11	28	24	35	1.90
75651--75730	31	2.6	31	79	0	88	31	23	7	37	1.83
94083--94125	19	2.3	19	84	8	52	32	11	0	55	1.36
94401--94435	11	3.1	11	87	4	52	42	0	0	57	0.99
96877--96933	27	2.1	27	83	3	69	33	1	15	49	1.55
96958--96990	16	2.0	17	88	5	50	33	0	15	51	1.43
97005--97035	15	2.1	15	100	0	62	41	6	19	32	1.77
97316--97350	17	2.0	18	94	5	63	37	28	17	17	1.92
97321--97359	17	2.3	17	90	0	60	28	33	23	15	1.95
99957--100058	33	3.1	33	64	5	80	17	21	38	22	1.93
100935--100968	17	2.0	17	100	0	68	64	0	5	29	1.17
102733--102798	31	2.1	31	88	0	96	39	13	22	24	1.90
110110--110175	31	2.1	31	91	0	105	33	12	28	25	1.92
110418--110451	16	2.2	16	89	5	52	73	0	11	14	1.10
111795--111952	21	7.8	20	70	7	77	37	25	17	18	1.93
111920--112113	20	9.6	20	82	6	87	35	26	18	19	1.95
111920--112113	40	4.8	39	84	3	217	35	26	18	19	1.95
111920--112112	60	3.2	60	83	3	253	35	26	18	19	1.95
112470--112540	33	2.2	33	94	0	124	11	23	16	47	1.79
112619--112696	41	1.9	41	97	0	147	44	16	25	12	1.83
112620--112695	21	3.7	21	83	3	109	46	17	25	11	1.82
112736--112792	14	3.7	14	75	20	60	8	24	22	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112720--112841	33	3.5	33	86	11	156	11	23	18	45	1.82
112780--112840	20	3.0	21	78	4	79	13	22	16	47	1.81
112776--112831	21	2.8	20	81	5	67	14	25	17	42	1.87
114536--114817	93	3.1	93	97	1	532	22	12	18	46	1.83
114862--114990	19	7.3	19	77	17	134	48	27	15	8	1.74
114897--114990	33	2.8	33	90	4	145	50	26	15	7	1.71
114948--114974	14	1.9	14	100	0	54	48	29	14	7	1.71
114862--114990	52	2.5	52	76	12	147	48	27	15	8	1.74
114986--115158	19	9.6	19	78	12	168	10	19	23	46	1.81
115008--115064	14	3.7	14	77	20	60	10	21	22	45	1.82
114986--115158	33	4.8	38	82	5	168	10	19	23	46	1.81
117081--117116	14	2.6	14	95	0	63	33	0	22	44	1.53
117223--117286	19	3.4	19	100	0	128	46	17	20	15	1.83
117223--117305	38	2.3	35	86	10	107	44	16	24	14	1.85
117295--117517	19	12.7	19	74	19	216	15	21	17	45	1.85
117301--117464	33	4.8	33	73	14	161	14	22	17	45	1.84
117295--117517	53	4.2	52	93	1	358	15	21	17	45	1.85
117352--117531	86	2.1	85	84	8	231	13	22	17	46	1.84
117333--117531	33	5.7	34	73	17	167	14	22	17	46	1.84
117332--117550	53	4.2	53	86	5	218	14	21	18	45	1.84
119149--119173	12	2.1	12	100	0	50	0	28	0	72	0.86
119347--119392	24	2.0	23	87	12	67	36	21	15	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120085--120313	20	11.4	20	87	1	253	19	17	25	36	1.94
121759--121814	2	28.0	2	100	0	112	50	0	0	50	1.00
124736--124781	18	2.6	17	80	19	58	19	10	4	65	1.41
131012--131068	18	2.9	20	82	12	73	24	10	3	61	1.44
133747--133841	12	7.7	13	77	5	65	63	2	1	33	1.13
133757--133841	3	28.0	3	75	15	77	63	2	0	34	1.07
138069--138102	16	2.1	16	89	10	52	67	2	8	20	1.31
138536--138586	26	2.0	25	96	3	93	35	25	7	31	1.85
139952--139980	11	2.5	12	88	11	51	65	0	6	27	1.18
143140--143173	10	3.5	10	88	4	52	14	29	8	47	1.75
145129--145156	14	2.0	14	100	0	56	28	28	14	28	1.95
148813--148839	14	1.9	14	100	0	54	29	14	18	37	1.91
150101--150181	29	2.8	29	96	3	146	44	16	22	17	1.86
150264--150297	15	2.3	15	94	0	59	14	20	32	32	1.93
151149--151212	19	3.4	18	70	18	58	20	15	1	62	1.40
154876--154921	19	2.3	19	85	7	56	17	23	34	23	1.96

Tables:   1

The End!