Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007086.1 Hibiscus syriacus cultivar Beakdansim tig00018485_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79134

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4483--4515
4
8.8
4
87
12
52
81
0
18
0
0.68
4482--4518
11
3.4
11
100
0
74
83
0
16
0
0.64
4483--4515
7
4.4
8
85
14
52
81
0
18
0
0.68
5599--5628
12
2.6
11
94
5
51
63
0
0
36
0.95
5660--5710
17
3.1
17
76
18
54
74
1
1
21
1.02
5664--5710
16
2.9
16
80
0
58
74
2
2
21
1.03
6263--6413
63
2.4
64
82
8
184
54
14
1
28
1.51
8129--8153
12
2.1
12
100
0
50
84
0
0
16
0.63
8119--8182
14
4.6
15
75
15
66
75
0
7
17
1.04
8120--8189
5
14.0
5
78
15
56
75
1
5
17
1.06
11069--11113
19
2.4
19
88
7
65
77
0
2
20
0.87
13699--13820
40
3.0
40
96
0
226
23
16
26
33
1.96
13925--14092
54
3.5
48
80
12
182
39
6
20
32
1.79
14968--15095
65
2.0
65
89
6
197
57
13
0
28
1.42
18163--18196
15
2.3
15
90
10
52
85
0
2
11
0.71
24438--24510
29
2.5
29
95
0
128
61
6
13
17
1.53
24775--24883
20
5.2
20
66
15
60
59
3
4
32
1.35
25210--25253
14
3.3
13
79
14
54
77
0
6
15
0.97
25202--25255
21
2.5
22
76
11
58
75
1
7
14
1.09
25042--25320
152
1.8
153
90
0
452
41
11
13
33
1.80
25475--25535
28
2.2
28
82
11
72
44
1
0
54
1.10
25743--25839
42
2.4
40
81
6
97
46
3
1
49
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25800--25862
24
2.6
25
70
7
60
53
0
1
44
1.10
25882--25921
14
3.0
14
80
20
50
52
0
0
47
1.00
26069--26103
14
2.5
14
90
0
52
42
8
14
34
1.76
27227--27282
26
2.2
26
86
0
76
46
8
12
32
1.73
28739--28766
3
9.3
3
100
0
56
67
0
0
32
0.91
28873--28914
13
3.3
13
78
15
52
78
7
2
11
1.04
29004--29045
17
2.4
17
80
11
50
71
0
9
19
1.13
30227--30286
3
20.3
3
80
10
70
65
3
0
31
1.09
30210--30281
33
2.2
33
82
9
85
65
2
2
29
1.21
30256--30303
6
7.1
7
86
13
50
58
0
2
39
1.10
30416--30440
11
2.3
11
100
0
50
44
8
8
40
1.63
30396--30526
36
3.6
36
78
14
119
45
7
4
42
1.53
30512--30554
2
21.5
2
100
0
86
51
0
0
48
1.00
30464--30642
98
1.8
96
80
13
213
45
6
4
43
1.50
30543--30629
35
2.4
36
83
9
97
43
8
4
43
1.54
31275--32132
81
10.4
81
80
6
922
23
21
25
30
1.99
31315--32132
165
5.0
165
94
1
1417
23
21
25
29
1.99
35474--35518
19
2.4
19
92
3
74
66
8
13
11
1.44
37219--37249
3
10.3
3
100
0
62
67
0
0
32
0.91
37357--37398
13
3.3
13
78
15
52
78
7
2
11
1.04
38715--38780
3
21.3
3
81
9
71
65
3
0
31
1.08
38715--38799
21
4.0
20
78
18
75
62
2
1
34
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38716--38790
13
5.2
14
78
20
75
62
2
1
33
1.17
38913--38937
11
2.3
11
100
0
50
44
8
8
40
1.63
38892--38986
36
2.6
36
81
9
113
45
8
4
42
1.54
39008--39053
2
23.5
2
95
4
85
50
0
0
50
1.00
40754--40787
13
2.7
13
90
4
52
35
0
14
50
1.44
51171--51306
17
7.9
17
82
4
139
41
8
12
36
1.74
51171--51326
87
1.8
87
82
6
203
41
9
13
35
1.77
63163--63213
12
4.1
12
74
18
50
66
9
9
13
1.44
71782--71807
11
2.4
11
100
0
52
19
11
15
53
1.71
75003--75046
21
2.0
21
83
12
54
34
9
22
34
1.86
75568--75670
17
6.1
17
69
18
72
38
9
13
37
1.78

Tables:   1

The End!