Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007090.1 Hibiscus syriacus cultivar Beakdansim tig00018511_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76970

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1024--1053
12
2.5
12
100
0
60
23
30
13
33
1.93
6311--6410
53
1.9
50
82
6
119
41
4
2
53
1.31
15956--16050
31
3.1
31
93
0
163
21
17
20
41
1.91
15994--16114
53
2.3
52
83
7
145
21
19
23
36
1.95
16824--16868
22
2.0
22
95
0
81
22
17
22
37
1.94
19494--19518
2
12.5
2
100
0
50
48
0
0
52
1.00
20374--20413
21
1.9
21
100
0
80
52
15
5
27
1.63
25536--25648
59
1.9
59
92
0
190
36
24
15
23
1.93
29624--29979
150
2.3
154
82
6
418
49
5
19
26
1.69
31042--31163
36
3.4
37
67
18
103
54
7
15
22
1.66
31036--31182
72
2.0
72
98
0
285
53
6
17
22
1.67
36651--36688
19
2.0
19
100
0
76
26
15
21
36
1.93
40415--40450
18
1.9
18
88
5
54
22
19
27
30
1.98
41497--41559
21
3.1
21
77
9
67
34
4
15
44
1.68
41488--41566
23
3.3
23
68
23
65
35
5
15
44
1.68
41585--41662
40
2.0
40
89
5
122
43
5
5
46
1.48
41709--41779
21
3.4
21
76
7
83
50
30
0
18
1.47
41894--41920
13
2.1
13
100
0
54
44
0
0
55
0.99
41933--41996
29
2.2
27
79
15
74
51
6
3
39
1.43
41944--41985
2
20.0
2
85
9
57
50
2
2
45
1.27
41991--42066
24
3.2
24
67
14
75
43
10
6
39
1.65
41989--42066
26
3.2
26
65
20
76
43
10
6
39
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41978--42119
48
3.0
48
94
0
239
47
9
7
35
1.64
42015--42088
22
3.2
22
65
20
60
48
13
5
32
1.65
42116--42180
21
3.1
20
70
24
53
50
27
0
21
1.49
42488--42534
22
2.0
22
88
8
67
42
0
2
55
1.12
42521--42574
20
2.7
20
80
8
65
48
5
5
40
1.50
42547--42581
15
2.2
16
95
5
63
51
5
2
40
1.40
42665--42729
14
4.7
14
74
11
62
49
23
0
27
1.50
42892--42935
23
1.9
23
95
0
79
47
4
0
47
1.22
43213--43247
16
2.2
16
100
0
70
34
14
31
20
1.92
43793--43828
18
1.9
18
88
5
54
25
19
25
30
1.98
44568--44630
21
3.1
21
77
9
67
34
4
15
44
1.68
44559--44637
23
3.3
23
68
23
65
35
5
15
44
1.68
44656--44733
40
2.0
40
89
5
122
43
5
5
46
1.48
44656--44743
40
2.2
41
86
7
121
44
5
5
44
1.51
45031--45067
15
2.4
15
95
4
65
51
5
2
40
1.39
45051--45144
48
1.9
49
86
2
136
51
6
7
35
1.56
45148--45206
21
2.8
21
73
19
68
50
28
0
20
1.48
45547--45597
20
2.4
21
74
9
59
45
5
7
41
1.57
45573--45607
15
2.2
16
90
5
54
54
5
2
37
1.39
45917--45960
23
1.9
23
95
0
79
47
4
0
47
1.22
46234--46272
16
2.4
16
100
0
78
35
15
30
17
1.91
47105--47130
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47157--47198
18
2.6
16
82
17
59
33
2
0
64
1.07
47164--47197
18
1.9
18
94
5
61
35
2
0
61
1.11
47260--47357
40
2.4
40
89
1
151
40
1
2
56
1.18
48953--49013
31
2.0
31
93
0
104
52
14
8
24
1.69
50243--50280
14
2.7
14
84
11
51
21
10
28
39
1.86
53111--53167
26
2.1
27
83
3
71
61
3
0
35
1.13
54530--54560
12
2.6
12
100
0
62
67
0
0
32
0.91
59573--59693
36
3.3
37
76
3
100
38
8
15
38
1.78
59773--59847
35
2.1
37
80
9
84
37
12
20
30
1.89
70823--70967
49
3.0
49
91
0
227
24
22
20
32
1.98
75489--75641
29
5.4
29
76
6
127
16
16
11
56
1.67
75605--75682
29
2.8
29
84
7
92
20
15
6
57
1.60
75478--75736
83
3.0
84
79
10
220
16
15
11
56
1.67
75595--75736
30
4.8
30
75
12
107
16
16
11
55
1.68

Tables:   1

The End!