Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007091.1 Hibiscus syriacus cultivar Beakdansim tig00018518_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54663

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3456--3571
43
2.7
43
77
9
105
29
21
18
30
1.97
3748--3856
42
2.6
41
84
4
112
26
16
27
29
1.97
3765--3856
42
2.2
42
88
0
139
28
18
28
25
1.98
12059--12154
38
2.5
38
87
0
138
22
28
22
26
1.99
12306--12415
46
2.4
46
93
3
188
32
17
5
44
1.71
19095--19195
46
2.2
46
92
0
166
33
19
5
40
1.76
22185--22265
22
3.7
22
91
0
126
17
25
28
28
1.97
22203--22282
22
3.9
19
81
14
81
17
22
32
27
1.96
23251--23293
18
2.4
18
96
0
77
34
25
30
9
1.87
25431--25593
64
2.5
63
83
9
179
32
20
19
27
1.97
26211--26253
2
21.5
2
100
0
86
51
0
0
48
1.00
26710--26765
22
2.5
22
91
0
94
14
26
30
28
1.95
28997--29087
21
4.3
21
84
0
110
42
18
34
4
1.70
28997--29087
42
2.2
42
87
0
128
42
18
34
4
1.70
29501--29671
43
4.0
43
80
7
141
35
23
17
22
1.95
30521--30570
23
2.2
23
85
0
64
54
8
8
30
1.58
31426--31477
20
2.6
20
87
0
77
32
28
11
26
1.91
35775--35964
7
27.1
7
100
0
380
14
0
43
42
1.45
36054--36094
10
4.1
10
90
0
64
21
39
0
39
1.54
36058--36145
40
2.2
40
82
8
99
26
35
6
31
1.83
36089--36145
20
2.8
20
94
0
105
29
33
10
26
1.90
37928--38167
119
2.0
119
95
0
426
32
13
21
31
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40470--40557
37
2.8
29
76
23
104
40
13
13
31
1.84
40481--40551
37
1.9
37
97
0
133
40
11
12
35
1.79
40541--40574
17
2.0
17
100
0
68
41
11
17
29
1.85
43626--43683
21
2.8
21
78
17
66
34
1
0
63
1.04
44572--44612
20
2.0
20
95
0
73
53
2
0
43
1.13
46723--46762
18
2.2
18
86
8
55
27
15
0
57
1.38
53141--53165
2
12.5
2
100
0
50
48
0
0
52
1.00
53387--53464
21
3.5
22
68
22
56
30
1
5
62
1.24
53396--53494
43
2.3
44
80
11
109
28
3
9
59
1.43
54450--54505
27
2.2
25
83
6
67
8
12
0
78
0.96

Tables:   1

The End!