genome.fa.s7092.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007092.1 Hibiscus syriacus cultivar Beakdansim tig00018519_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126730

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032--1081	3	17.3	3	80	15	61	40	0	0	60	0.97
1034--1084	16	3.1	17	81	13	63	41	0	0	58	0.98
1032--1084	11	4.6	12	75	17	58	41	0	0	58	0.98
1027--1082	18	3.2	18	76	16	64	42	0	0	57	0.99
2449--2474	2	13.0	2	100	0	52	50	0	0	50	1.00
2740--2789	24	2.0	25	81	11	59	44	2	4	50	1.32
4075--4109	17	2.1	17	100	0	70	45	17	5	31	1.71
5652--5703	25	2.1	24	82	13	61	21	9	3	65	1.38
7944--7971	2	14.0	2	100	0	56	50	0	0	50	1.00
9672--9727	3	19.7	3	75	10	55	42	0	0	57	0.99
11198--11247	24	2.1	24	85	7	66	22	2	16	60	1.46
17631--17655	6	4.2	6	100	0	50	16	0	0	84	0.63
17953--17995	20	2.1	21	87	8	63	13	16	0	69	1.19
21873--21898	13	2.0	13	100	0	52	23	0	0	76	0.78
22234--22259	2	13.0	2	100	0	52	50	0	0	50	1.00
22248--22293	25	1.9	23	82	8	56	45	0	4	50	1.21
25337--25394	15	3.7	15	75	8	62	22	34	25	17	1.96
25439--25486	15	3.1	16	84	6	62	33	29	20	16	1.95
30377--30492	36	3.2	36	86	6	110	36	18	12	31	1.89
30390--30492	36	2.9	36	89	5	156	33	19	11	34	1.88
30670--30810	75	1.9	75	88	2	212	28	14	17	40	1.88
30818--31213	36	10.6	37	77	13	264	27	20	13	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30880--30944	21	3.4	21	64	24	61	24	24	12	38	1.90
30983--31023	21	2.0	21	90	0	64	26	21	14	36	1.93
31004--31296	36	8.5	36	75	10	297	28	21	13	36	1.92
31035--31296	102	2.6	103	91	1	420	28	20	13	36	1.91
30857--31161	159	1.9	159	91	0	502	27	20	13	37	1.91
31004--31189	66	2.7	68	85	7	243	28	22	13	35	1.92
31141--31205	21	3.4	21	64	24	61	24	24	12	38	1.90
31166--31334	66	2.6	64	83	8	207	28	20	14	36	1.91
31268--31325	28	2.0	29	90	3	91	32	13	15	37	1.87
31273--31318	15	3.2	14	77	22	51	34	17	13	34	1.88
31341--31454	36	3.1	35	69	9	86	23	19	13	43	1.86
31363--31487	36	3.3	37	67	5	99	28	20	14	37	1.91
31338--31576	73	3.2	73	87	3	343	27	17	13	41	1.87
31517--31637	61	2.0	61	86	3	172	31	19	12	37	1.88
32491--32541	3	17.0	3	80	8	59	31	1	3	62	1.24
32483--32530	19	2.3	23	86	13	68	31	2	2	64	1.16
32483--32541	21	2.9	21	83	14	63	32	1	3	62	1.21
32481--32541	9	7.2	8	75	14	52	32	1	3	62	1.21
37287--37333	21	2.3	20	85	7	60	46	0	0	53	1.00
37298--37441	29	5.1	28	67	26	83	45	0	1	52	1.14
37287--37345	19	3.0	20	85	5	66	45	0	0	54	0.99
37298--37441	28	5.1	29	67	22	85	45	0	1	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37358--37459	29	3.5	29	80	11	93	45	0	1	51	1.19
37624--37693	20	3.5	20	96	0	131	35	14	10	40	1.79
37624--37702	40	2.0	40	89	0	122	35	15	8	40	1.78
37676--37757	15	5.5	15	88	2	121	35	19	7	37	1.80
37676--37757	30	2.8	30	94	1	139	35	19	7	37	1.80
37676--37762	45	2.0	44	93	2	147	33	19	6	40	1.78
37889--38103	117	1.8	117	83	2	288	47	11	10	30	1.73
39363--39426	2	31.0	2	90	6	101	50	3	0	46	1.17
42893--42927	18	1.9	18	88	0	52	14	31	14	40	1.86
55313--55362	21	2.4	21	93	0	82	36	2	34	28	1.69
57070--57132	30	2.1	30	93	0	108	28	19	25	26	1.98
57527--57558	16	2.0	16	93	0	55	34	6	25	34	1.81
61766--61858	15	6.2	15	94	0	168	31	33	21	13	1.93
61943--62020	29	2.7	29	94	2	140	17	23	15	43	1.87
62032--62077	12	3.8	12	91	0	56	39	26	6	28	1.81
62032--62078	24	2.0	24	87	8	69	38	25	6	29	1.81
62045--62078	12	2.8	12	95	0	59	41	26	2	29	1.70
62387--62545	64	2.5	63	81	6	162	25	22	21	30	1.98
63829--63891	30	2.1	30	93	0	108	28	19	25	26	1.98
65110--65172	18	3.6	18	84	2	83	39	7	23	28	1.83
65721--65837	33	3.2	36	78	12	134	40	36	10	12	1.78
74541--74639	3	32.3	3	85	4	108	42	0	1	56	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74556--74648	49	1.9	49	88	2	143	47	0	1	51	1.07
75984--76031	25	1.9	25	83	8	62	52	2	0	45	1.12
76245--76287	2	22.0	2	95	4	79	48	0	0	51	1.00
79378--79422	2	22.5	2	100	0	90	48	0	0	51	1.00
79609--79733	35	3.4	35	75	14	110	46	3	6	44	1.45
79609--79753	35	4.0	34	71	19	89	46	4	5	43	1.46
79781--79825	20	2.2	20	88	7	65	13	2	0	84	0.72
79781--79818	14	2.8	13	92	7	67	15	0	0	84	0.63
79781--79825	14	3.3	13	81	6	54	13	2	0	84	0.72
80353--80389	16	2.3	16	100	0	74	37	21	24	16	1.93
81158--81186	10	2.7	11	89	10	51	24	0	0	75	0.80
81164--81188	13	1.9	13	100	0	50	20	0	0	80	0.72
81823--82234	209	2.0	209	100	0	824	24	19	18	38	1.93
82600--82632	17	1.9	17	93	0	57	6	12	9	72	1.26
83241--83283	17	2.4	18	92	3	70	9	11	9	69	1.36
86662--87692	84	12.4	84	81	4	1162	29	25	21	23	1.99
86662--87663	166	6.0	166	92	0	1648	28	25	21	24	1.99
88605--88649	20	2.2	20	88	7	65	13	2	0	84	0.72
88605--88642	14	2.8	13	92	7	67	15	0	0	84	0.63
88605--88649	14	3.3	13	81	6	54	13	2	0	84	0.72
89948--89979	16	2.0	16	93	0	55	21	0	0	78	0.76
90932--90960	8	3.8	8	95	4	51	0	0	13	86	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96715--96780	21	3.5	21	67	26	65	28	4	19	46	1.69
96707--96814	35	2.9	36	87	6	146	31	4	18	45	1.70
97242--97273	16	1.9	17	93	6	57	37	6	21	34	1.79
101349--101413	20	3.5	20	67	28	61	30	4	18	46	1.69
101348--101458	35	3.1	34	86	8	150	32	3	18	45	1.67
103073--103102	16	1.9	16	93	6	53	50	23	13	13	1.77
106022--106113	39	2.4	39	88	3	132	47	1	18	32	1.56
107820--107876	30	1.9	30	88	0	87	36	22	31	8	1.85
108107--108164	24	2.4	24	94	0	98	39	12	18	29	1.87
109343--109375	17	1.9	17	88	11	50	69	0	0	30	0.88
114008--114053	24	2.0	22	87	8	65	63	0	6	30	1.20
114336--114369	17	2.0	17	100	0	68	29	17	29	23	1.97
115805--115831	14	1.9	14	100	0	54	74	0	18	7	1.05
116119--116153	2	17.5	2	93	0	61	54	0	0	45	0.99
116174--116237	34	1.9	32	90	6	101	67	0	6	26	1.14
116316--116356	16	2.6	16	78	21	50	68	7	4	19	1.32
118272--118530	106	2.4	106	90	0	401	23	19	23	32	1.97
119740--119774	11	3.4	11	84	15	56	0	5	8	85	0.73

Tables:   1

The End!