Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007094.1 Hibiscus syriacus cultivar Beakdansim tig00018530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60917

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3366--3391
7
3.7
7
100
0
52
76
0
0
23
0.78
5098--5178
42
1.9
43
87
2
119
20
17
9
51
1.73
5098--5191
42
2.2
41
83
9
109
19
18
9
53
1.71
23838--24129
81
3.6
81
87
1
399
27
22
12
37
1.90
24123--24334
68
3.1
67
90
2
325
26
23
16
33
1.95
24916--24994
34
2.3
34
100
0
158
31
18
20
29
1.97
26623--26737
39
2.9
39
85
0
140
36
11
29
22
1.89
28397--28440
22
2.0
22
100
0
88
45
9
36
9
1.68
28616--28708
42
2.2
42
82
0
114
31
15
18
35
1.91
28858--28969
42
2.7
42
88
5
165
29
18
18
33
1.95
29070--29111
21
2.0
22
90
4
68
76
2
4
16
1.07
29070--29119
21
2.3
21
86
3
64
74
4
6
16
1.17
34166--34235
30
2.3
30
95
0
122
28
17
31
22
1.96
40776--40820
14
3.2
14
93
0
72
66
20
2
11
1.33
43360--43427
23
3.0
23
95
0
118
23
26
27
22
1.99
45081--45246
64
2.6
63
81
11
185
27
21
18
33
1.96
45493--45541
3
16.7
3
87
4
73
36
0
2
61
1.08
47451--47475
2
12.5
2
100
0
50
48
0
0
52
1.00
47460--47695
102
2.3
98
90
4
373
30
7
12
50
1.68
47460--47682
49
4.4
49
92
5
356
30
7
11
50
1.66
47751--47863
52
2.2
52
92
7
194
29
5
10
54
1.56
47751--47869
50
2.3
52
91
7
199
29
5
10
55
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47562--47933
193
1.9
188
86
7
518
29
7
13
48
1.70
59775--59844
17
4.2
17
79
17
65
77
0
12
10
1.00

Tables:   1

The End!