genome.fa.s7095.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007095.1 Hibiscus syriacus cultivar Beakdansim tig00018537_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73494

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4183--4619	218	2.0	218	96	0	811	41	22	24	12	1.87
4972--5051	29	2.8	29	98	0	151	28	36	27	7	1.84
5096--5142	19	2.4	20	96	3	87	23	12	44	19	1.85
5111--5163	16	3.1	16	83	8	52	20	11	47	20	1.81
5182--5241	29	2.0	30	93	3	104	15	28	38	18	1.91
5254--5392	65	2.1	65	89	0	206	25	32	15	26	1.96
5791--5834	21	2.1	21	91	0	70	29	0	15	54	1.42
6328--6389	17	3.4	17	73	16	61	40	0	11	48	1.39
6350--6393	23	2.0	23	81	4	54	40	0	9	50	1.34
6619--6666	22	2.2	22	84	0	60	50	8	2	39	1.44
6629--6678	22	2.4	21	86	6	66	48	6	4	42	1.46
9626--9714	17	4.8	18	73	16	65	48	0	7	43	1.32
9916--9947	12	2.7	12	95	0	55	53	0	3	43	1.16
9889--9947	23	2.5	22	84	13	66	49	1	6	42	1.39
9969--10188	26	8.6	25	77	14	191	44	2	9	43	1.50
9884--10182	113	2.7	110	88	8	432	44	2	9	43	1.48
10160--10909	60	12.6	60	69	19	398	41	1	11	45	1.50
10388--10484	14	6.7	14	72	19	65	40	0	12	47	1.41
9995--11298	440	3.0	432	73	16	1127	41	2	11	44	1.52
10550--10686	11	10.9	12	68	22	52	43	0	12	44	1.42
10603--10665	14	4.6	14	74	18	60	38	0	15	46	1.47
10598--10681	41	2.1	40	93	2	141	40	0	14	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10553--10853	98	2.9	101	81	14	351	42	0	11	45	1.40
10829--10855	10	2.7	10	100	0	54	40	0	18	40	1.51
10855--10904	21	2.3	22	80	10	59	40	0	8	52	1.31
10876--10924	25	2.0	25	87	0	71	40	0	14	44	1.45
11021--11070	22	2.3	22	86	6	66	48	2	2	48	1.24
11029--11298	21	13.0	21	66	16	102	41	0	10	47	1.38
10557--11302	285	2.6	275	79	12	880	41	1	11	45	1.49
11035--11069	14	2.4	15	90	4	54	45	0	2	51	1.16
11057--11206	11	12.5	12	69	21	52	42	0	13	44	1.43
10997--11302	60	5.3	60	86	9	449	41	0	11	46	1.42
11068--11230	35	5.2	35	62	27	114	42	0	12	45	1.41
11185--11298	47	2.3	49	91	5	187	41	0	11	47	1.39
11270--11317	14	3.6	14	81	16	66	35	0	16	47	1.47
11270--11318	25	2.0	25	95	0	89	36	0	16	46	1.47
11185--11318	47	2.8	46	84	10	130	40	0	12	47	1.42
10639--11399	394	1.9	395	92	4	1275	41	2	11	44	1.54
12310--12354	23	2.0	23	86	0	63	55	2	2	40	1.24
13641--13689	22	2.2	22	92	7	82	38	12	2	46	1.53
13633--13758	30	4.4	29	75	16	97	44	9	1	44	1.46
13663--13741	30	2.6	30	84	9	99	43	7	2	46	1.45
14002--14095	29	3.0	29	79	11	98	50	8	0	41	1.33
14001--14055	18	3.4	18	65	31	52	52	9	0	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14044--14107	31	1.9	31	84	12	83	43	7	0	48	1.32
14647--14702	29	1.9	29	89	7	87	17	26	37	17	1.93
14988--15040	19	2.8	19	91	0	88	54	30	3	11	1.53
20690--20762	26	2.8	26	93	0	119	41	19	6	32	1.78
20737--20807	37	1.9	36	88	2	106	42	19	2	35	1.66
30908--30946	3	13.0	3	89	10	62	33	0	0	66	0.92
31506--31536	14	2.2	14	94	0	53	83	9	6	0	0.79
33502--33540	18	2.2	18	100	0	78	25	5	35	33	1.78
33899--33926	13	2.2	13	100	0	56	32	14	0	53	1.41
34330--34502	60	2.9	58	84	6	233	52	3	11	32	1.55
34414--34501	13	6.2	13	69	19	52	55	2	10	31	1.46
34368--34461	29	3.2	29	69	11	82	54	5	7	32	1.51
34330--34506	59	3.0	59	87	3	250	51	3	11	33	1.56
36703--36889	31	6.0	31	76	9	155	29	19	20	30	1.97
36703--36889	63	3.0	63	88	3	254	29	19	20	30	1.97
37555--37594	21	1.9	21	94	0	71	27	22	25	25	2.00
45474--45538	33	1.9	34	87	3	96	53	9	10	26	1.65
49563--49611	5	10.6	5	86	8	52	4	22	53	20	1.63
49565--49617	13	3.9	13	82	5	61	3	18	52	24	1.62
49563--49612	18	2.8	18	81	9	66	4	22	52	22	1.64
55526--56053	262	2.0	262	98	0	1013	38	17	12	30	1.88
57023--57065	19	2.3	19	91	0	68	20	27	30	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62716--62756	21	2.0	21	95	0	73	9	17	46	26	1.79
62818--62847	14	2.1	14	100	0	60	30	13	13	43	1.82
66869--66916	22	2.2	22	81	7	53	58	2	2	37	1.22
67522--67569	23	2.1	23	100	0	96	20	18	0	60	1.36
68393--68444	24	2.2	24	96	0	95	51	0	13	34	1.41

Tables:   1

The End!