Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007097.1 Hibiscus syriacus cultivar Beakdansim tig00018545_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 272671
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
File 1 of 2
Found at i:3684 original size:20 final size:20
Alignment explanation
Indices: 3627--3696 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
3617 TTTTAATATA
*
3627 AATATTTATTTTGAGTGATTT-
1 AATATTT-TTTTGA-TTATTTG
* *
3648 AAT-TTTTATTTGTTTATTTT
1 AATATTTT-TTTGATTATTTG
*
3668 TATATTTTTTTGATTATTTG
1 AATATTTTTTTGATTATTTG
3688 AATATTTTT
1 AATATTTTT
3697 GTATTTCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
19 6 0.15
20 27 0.68
21 7 0.17
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (20 bp):
AATATTTTTTTGATTATTTG
Found at i:9300 original size:21 final size:21
Alignment explanation
Indices: 9276--9387 Score: 99
Period size: 21 Copynumber: 5.4 Consensus size: 21
9266 GATTCAATCA
*
9276 GTATCGCTACAATGGTAAGGG
1 GTATCGATACAATGGTAAGGG
* *
9297 GTATTGATACAATGGTAAGGT
1 GTATCGATACAATGGTAAGGG
9318 GTATCGATAC--T-GTAAGGGG
1 GTATCGATACAATGGTAA-GGG
* * *
9337 GTATCGGTACCATAGT-AGGG
1 GTATCGATACAATGGTAAGGG
*
9357 TAGTATCGATACCATGGTAA-GG
1 --GTATCGATACAATGGTAAGGG
9379 GTATCGATA
1 GTATCGATA
9388 TCAGGCAACA
Statistics
Matches: 76, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
18 4 0.05
19 12 0.16
20 12 0.16
21 29 0.38
22 18 0.24
23 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (21 bp):
GTATCGATACAATGGTAAGGG
Found at i:9922 original size:47 final size:47
Alignment explanation
Indices: 9869--10103 Score: 332
Period size: 47 Copynumber: 5.0 Consensus size: 47
9859 AAATCAAATT
9869 CATAATTGAAAATGCATGAAAGTATGCATTAAGGCATGAAAGGATGC
1 CATAATTGAAAATGCATGAAAGTATGCATTAAGGCATGAAAGGATGC
* *
9916 CATAATTGAAAATACATGAAAGGATGCATTAAGGCATGAAAGGATGC
1 CATAATTGAAAATGCATGAAAGTATGCATTAAGGCATGAAAGGATGC
* *
9963 CATAATTGAAAATGCACGAAAGGT-TGCATTAAGGCATGAACA-AATGC
1 CATAATTGAAAATGCATGAAA-GTATGCATTAAGGCATGAA-AGGATGC
* * * * * *
10010 CACAATTTAAAATGAATGAAAGGAAGTATTAAGGCATGAAAGGATGC
1 CATAATTGAAAATGCATGAAAGTATGCATTAAGGCATGAAAGGATGC
10057 CATAATTGAAAATGCATGAAA-TGATGCATTAAGGCATGAAAGGATGC
1 CATAATTGAAAATGCATGAAAGT-ATGCATTAAGGCATGAAAGGATGC
10104 ATTAAAGCAT
Statistics
Matches: 163, Mismatches: 20, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
46 2 0.01
47 159 0.98
48 2 0.01
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.22
Consensus pattern (47 bp):
CATAATTGAAAATGCATGAAAGTATGCATTAAGGCATGAAAGGATGC
Found at i:9955 original size:20 final size:20
Alignment explanation
Indices: 9882--9962 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 20
9872 AATTGAAAAT
*
9882 GCATGAAAGTATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
9902 GCATGAAAGGATGCCATAATTGAAAAT
1 GCATGAAAGGATG-C---ATT---AAG
*
9929 ACATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
9949 GCATGAAAGGATGC
1 GCATGAAAGGATGC
9963 CATAATTGAA
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
20 27 0.55
21 1 0.02
23 3 0.06
24 3 0.06
26 1 0.02
27 14 0.29
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:10095 original size:20 final size:20
Alignment explanation
Indices: 10070--10123 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
10060 AATTGAAAAT
*
10070 GCATGAAATGATGCATTAAG
1 GCATGAAATGATGCATTAAA
*
10090 GCATGAAAGGATGCATTAAA
1 GCATGAAATGATGCATTAAA
10110 GCATGAAATGATGC
1 GCATGAAATGATGC
10124 CATATATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.41, C:0.11, G:0.26, T:0.22
Consensus pattern (20 bp):
GCATGAAATGATGCATTAAA
Found at i:13885 original size:22 final size:21
Alignment explanation
Indices: 13853--13893 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
13843 GTATCTCCAT
13853 TTCATCATCAACACCATCATC
1 TTCATCATCAACACCATCATC
*
13874 TTCATCCATCAAGACCATCA
1 TTCAT-CATCAACACCATCA
13894 ATTCTGCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.34, C:0.37, G:0.02, T:0.27
Consensus pattern (21 bp):
TTCATCATCAACACCATCATC
Found at i:14234 original size:16 final size:16
Alignment explanation
Indices: 14202--14266 Score: 53
Period size: 18 Copynumber: 3.9 Consensus size: 16
14192 ACAAAATTGG
14202 AAAGCAAAAAGAAAAGA
1 AAAGCAAAAAG-AAAGA
*
14219 AAAGACAAAAAGAAGAAAA
1 AAAG-CAAAAAG-A-AAGA
*
14238 AAATCAGAAAA-AAAGA
1 AAAGCA-AAAAGAAAGA
14254 AAAG-AAAAAGAAA
1 AAAGCAAAAAGAAA
14267 TTCAAAAAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
14 4 0.10
15 4 0.10
16 6 0.15
17 5 0.12
18 11 0.28
19 10 0.25
ACGTcount: A:0.78, C:0.05, G:0.15, T:0.02
Consensus pattern (16 bp):
AAAGCAAAAAGAAAGA
Found at i:14265 original size:19 final size:19
Alignment explanation
Indices: 14207--14266 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
14197 ATTGGAAAGC
*
14207 AAAAAGAAAAGAAAAGACAA
1 AAAAAGAAAAGAAAA-AGAA
*
14227 AAAGAAGAAAA-AAATCAGAA
1 AAA-AAGAAAAGAAA-AAGAA
14247 AAAAAGAAAAGAAAAAGAA
1 AAAAAGAAAAGAAAAAGAA
14266 A
1 A
14267 TTCAAAAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 12 0.35
20 15 0.44
21 7 0.21
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.02
Consensus pattern (19 bp):
AAAAAGAAAAGAAAAAGAA
Found at i:22507 original size:22 final size:23
Alignment explanation
Indices: 22481--22525 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
22471 CAACAAGTGG
*
22481 GTATCAGTACCATAGT-AGGGTA
1 GTATCAATACCATAGTAAGGGTA
*
22503 GTATCAATACCATGGTAAGGGTA
1 GTATCAATACCATAGTAAGGGTA
22526 TCGATACCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (23 bp):
GTATCAATACCATAGTAAGGGTA
Found at i:22578 original size:95 final size:95
Alignment explanation
Indices: 22403--22589 Score: 218
Period size: 95 Copynumber: 2.0 Consensus size: 95
22393 ATGCCTATTA
* * * *
22403 GGTAGTATCGATACCATGGTAAGGGGTATCGATACCATGTAACATCGAATCAAAAATAGGTATCG
1 GGTAGTATCAATACCATGGTAAGGGGTATCGATACCATGCAACATCGAAGCAAAAATAGGTATCA
* *
22468 GTGCAACAAGTGGGTATCAGTACCATAGTAG
66 AT-CAACAAGGGGGTATCAGTACCATAGTAG
* * *
22499 GGTAGTATCAATACCATGGTAA-GGGTATCGATACCA-GACAACATCGAAGCTAAATTCGGTATC
1 GGTAGTATCAATACCATGGTAAGGGGTATCGATACCATG-CAACATCGAAGCAAAAATAGGTATC
* *
22562 AAT-ATCGGAAGGGGGTATCGGTACCATA
65 AATCAAC--AAGGGGGTATCAGTACCATA
22590 ATATAGAAGA
Statistics
Matches: 77, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
93 2 0.03
94 1 0.01
95 53 0.69
96 21 0.27
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.24
Consensus pattern (95 bp):
GGTAGTATCAATACCATGGTAAGGGGTATCGATACCATGCAACATCGAAGCAAAAATAGGTATCA
ATCAACAAGGGGGTATCAGTACCATAGTAG
Found at i:23105 original size:20 final size:20
Alignment explanation
Indices: 23032--23098 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
23022 AATTGAAGAT
23032 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
23052 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
23072 TCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
23092 GCATGAA
1 GCATGAA
23099 CAGATGCCGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.40, C:0.10, G:0.28, T:0.21
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:26531 original size:51 final size:51
Alignment explanation
Indices: 26472--26584 Score: 147
Period size: 51 Copynumber: 2.2 Consensus size: 51
26462 AGAATTATAT
** * * * **
26472 TTATTATTTTTTTAGGAATTAAGATCGATTTAAAATGTTAT-TCTTAGTTTA
1 TTATTATTTTAATAGGAATTAAGATAGAATCAAAACATTATCT-TTAGTTTA
26523 TTATTATTTTAATAGGAATTAAGATAGAATCAAAACATTATCTTTAGTTTA
1 TTATTATTTTAATAGGAATTAAGATAGAATCAAAACATTATCTTTAGTTTA
26574 TTATTATTTTA
1 TTATTATTTTA
26585 TTCATTAGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
51 53 0.98
52 1 0.02
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.50
Consensus pattern (51 bp):
TTATTATTTTAATAGGAATTAAGATAGAATCAAAACATTATCTTTAGTTTA
Found at i:27401 original size:14 final size:14
Alignment explanation
Indices: 27382--27416 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
27372 TATTTTACAT
27382 AAAAAAAAAGCAAA
1 AAAAAAAAAGCAAA
27396 AAAAAAAAAGCAAA
1 AAAAAAAAAGCAAA
27410 AAAAAAA
1 AAAAAAA
27417 GCGAGAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.89, C:0.06, G:0.06, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAGCAAA
Found at i:27427 original size:14 final size:12
Alignment explanation
Indices: 27382--27439 Score: 62
Period size: 12 Copynumber: 4.7 Consensus size: 12
27372 TATTTTACAT
27382 AAAAAAAAAGCAAA
1 AAAAAAAAAGC--A
27396 AAAAAAAAAGCA
1 AAAAAAAAAGCA
*
27408 AAAAAAAAAGCG
1 AAAAAAAAAGCA
* * *
27420 AGAGAAAAAGTA
1 AAAAAAAAAGCA
27432 AAAAAAAA
1 AAAAAAAA
27440 TCCAAAATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
12 26 0.70
14 11 0.30
ACGTcount: A:0.81, C:0.05, G:0.12, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAGCA
Found at i:31202 original size:11 final size:11
Alignment explanation
Indices: 31188--31222 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
31178 AGTTAAAACA
31188 TTATTATTAGT
1 TTATTATTAGT
*
31199 TTATTATTATT
1 TTATTATTAGT
31210 TTATTCATTAGT
1 TTATT-ATTAGT
31222 T
1 T
31223 ACTTATATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 15 0.71
12 6 0.29
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.66
Consensus pattern (11 bp):
TTATTATTAGT
Found at i:35459 original size:22 final size:23
Alignment explanation
Indices: 35429--35472 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
35419 TTTCTGTTAG
35429 GGTGATATTTGTGTAAA-ATTTA
1 GGTGATATTTGTGTAAATATTTA
* *
35451 GGTGTTATTTTTGTAAATATTT
1 GGTGATATTTGTGTAAATATTT
35473 GTAGAAGGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.52
Consensus pattern (23 bp):
GGTGATATTTGTGTAAATATTTA
Found at i:36906 original size:24 final size:24
Alignment explanation
Indices: 36879--36947 Score: 120
Period size: 24 Copynumber: 2.9 Consensus size: 24
36869 CGATTTGAAC
36879 TTTGATATGATACTTGACCTGGAT
1 TTTGATATGATACTTGACCTGGAT
*
36903 TTTGATATGATACTTGACCTAGAT
1 TTTGATATGATACTTGACCTGGAT
*
36927 TTTTATATGATACTTGACCTG
1 TTTGATATGATACTTGACCTG
36948 AATTATATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.43
Consensus pattern (24 bp):
TTTGATATGATACTTGACCTGGAT
Found at i:36961 original size:24 final size:23
Alignment explanation
Indices: 36874--36951 Score: 102
Period size: 24 Copynumber: 3.3 Consensus size: 23
36864 ATTTTCGATT
*
36874 TGAACTTTGATATGATACTTGACC
1 TGAA-TTTTATATGATACTTGACC
*
36898 TGGATTTTGATATGATACTTGACC
1 TGAATTTT-ATATGATACTTGACC
*
36922 TAGATTTTTATATGATACTTGACC
1 T-GAATTTTATATGATACTTGACC
36946 TGAATT
1 TGAATT
36952 ATATTTTGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
23 7 0.15
24 35 0.74
25 5 0.11
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.42
Consensus pattern (23 bp):
TGAATTTTATATGATACTTGACC
Found at i:38575 original size:23 final size:23
Alignment explanation
Indices: 38545--38598 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
38535 CCTCTTTAAA
* *
38545 CTTCGATCTACTCACCGTCTGAC
1 CTTCGATCGACTCACCGTCCGAC
38568 CTTCGATCGACTCACCGTCCGAC
1 CTTCGATCGACTCACCGTCCGAC
38591 CTTCGATC
1 CTTCGATC
38599 AACAAACCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.17, C:0.41, G:0.15, T:0.28
Consensus pattern (23 bp):
CTTCGATCGACTCACCGTCCGAC
Found at i:39226 original size:11 final size:11
Alignment explanation
Indices: 39190--39228 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
39180 CTGCGCTGAC
39190 CGTTGACCAGAG
1 CGTTGACCAG-G
*
39202 CTTTGACC-GG
1 CGTTGACCAGG
39212 CGTTGACCAGG
1 CGTTGACCAGG
39223 CGTTGA
1 CGTTGA
39229 ACGACCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 8 0.33
11 9 0.38
12 7 0.29
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.23
Consensus pattern (11 bp):
CGTTGACCAGG
Found at i:47782 original size:19 final size:21
Alignment explanation
Indices: 47758--47797 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
47748 AATTCATTAT
47758 TTTCC-TTTA-TTTTTTATTC
1 TTTCCTTTTATTTTTTTATTC
47777 TTTCCTTTTATTTTTTTATTC
1 TTTCCTTTTATTTTTTTATTC
47798 AATATAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 4 0.21
21 10 0.53
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTCCTTTTATTTTTTTATTC
Found at i:47857 original size:2 final size:2
Alignment explanation
Indices: 47850--47914 Score: 121
Period size: 2 Copynumber: 32.5 Consensus size: 2
47840 ATTTATTTCT
*
47850 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
47892 TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
47915 TTCATATGTA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:49520 original size:17 final size:18
Alignment explanation
Indices: 49494--49528 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
49484 TACTAATCAA
*
49494 TTTTGTTTTATTGTTTTT
1 TTTTGTTTTAATGTTTTT
49512 TTTTG-TTTAATGTTTTT
1 TTTTGTTTTAATGTTTTT
49529 CAAATACATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.09, C:0.00, G:0.11, T:0.80
Consensus pattern (18 bp):
TTTTGTTTTAATGTTTTT
Found at i:52043 original size:20 final size:20
Alignment explanation
Indices: 52018--52183 Score: 91
Period size: 20 Copynumber: 7.4 Consensus size: 20
52008 TAAATGAAAT
52018 GCATGAAATGATGCATTAAG
1 GCATGAAATGATGCATTAAG
*
52038 GCATGAAA-GTATGCCATAAATGAAAT
1 GCATGAAATG-ATG-CAT---T--AAG
*
52064 GAATGAAATGATGCATTAAG
1 GCATGAAATGATGCATTAAG
* *
52084 CCATGAAATGATGCCATAAATGAAAT
1 GCATGAAATGATG-CAT---T--AAG
52110 GCATGAAATGATGCATTAAG
1 GCATGAAATGATGCATTAAG
* *
52130 GCATGAAAGGATGCCATAAATGAAAT
1 GCATGAAATGATG-CAT---T--AAG
*
52156 GCATGAAATGATGTATTAAG
1 GCATGAAATGATGCATTAAG
52176 GCATGAAA
1 GCATGAAA
52184 AGATACCATA
Statistics
Matches: 113, Mismatches: 13, Indels: 40
0.68 0.08 0.24
Matches are distributed among these distances:
19 1 0.01
20 48 0.42
21 9 0.08
22 3 0.03
24 3 0.03
25 8 0.07
26 40 0.35
27 1 0.01
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.23
Consensus pattern (20 bp):
GCATGAAATGATGCATTAAG
Found at i:52059 original size:46 final size:46
Alignment explanation
Indices: 52007--52245 Score: 344
Period size: 46 Copynumber: 5.2 Consensus size: 46
51997 AAACGAATAT
52007 ATAAATGAAATGCATGAAATGATGCATTAAGGCATGAAAGTATGCC
1 ATAAATGAAATGCATGAAATGATGCATTAAGGCATGAAAGTATGCC
* *
52053 ATAAATGAAATGAATGAAATGATGCATTAAGCCATGAAA-TGATGCC
1 ATAAATGAAATGCATGAAATGATGCATTAAGGCATGAAAGT-ATGCC
*
52099 ATAAATGAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCC
1 ATAAATGAAATGCATGAAATGATGCATTAAGGCATGAAAGTATGCC
* *
52145 ATAAATGAAATGCATGAAATGATGTATTAAGGCATGAAAAG-ATACC
1 ATAAATGAAATGCATGAAATGATGCATTAAGGCATG-AAAGTATGCC
* * *
52191 ATAAATGAAATGCAT--ATTGGTGCATTAAGGCATGAAATGT-GGCC
1 ATAAATGAAATGCATGAAATGATGCATTAAGGCATGAAA-GTATGCC
52235 ATAAATGAAAT
1 ATAAATGAAAT
52246 TAACATAATA
Statistics
Matches: 176, Mismatches: 12, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
43 3 0.02
44 30 0.17
45 1 0.01
46 138 0.78
47 4 0.02
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.24
Consensus pattern (46 bp):
ATAAATGAAATGCATGAAATGATGCATTAAGGCATGAAAGTATGCC
Found at i:52106 original size:12 final size:13
Alignment explanation
Indices: 52083--52123 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
52073 GATGCATTAA
52083 GCCATGAAATGAT
1 GCCATGAAATGAT
52096 GCCAT-AAATGAAAT
1 GCCATGAAATG--AT
52110 G-CATGAAATGAT
1 GCCATGAAATGAT
52122 GC
1 GC
52124 ATTAAGGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
12 8 0.33
13 8 0.33
14 8 0.33
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (13 bp):
GCCATGAAATGAT
Found at i:60415 original size:79 final size:79
Alignment explanation
Indices: 60284--60892 Score: 862
Period size: 79 Copynumber: 7.7 Consensus size: 79
60274 CACCGTTATC
** * * **
60284 CATTTCATTTATGGCATCTTTTCATGCCAATAATGCACCCATATGCATTATTCTATTATATTGAC
1 CATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGAC
*
60349 TATGTACCCATATA
66 AATGTACCCATATA
** * *
60363 CATTTCAGCTATGGCATCCTTTCATGCTTATAATGCACCAATATGCAATATTCTTTTATGCTGAC
1 CATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGAC
60428 AATGTACCCATATA
66 AATGTACCCATATA
* *
60442 CATTTCAGTTATGGCATCCTTTCATGCTAATAATGCACCCATATGCATTATTCTTTTATGCTGAC
1 CATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGAC
60507 AATGTACCCATATA
66 AATGTACCCATATA
* * * * * * *
60521 CATTTCAGCTAGGGCATTCTTTCATTCCAATAAAGCATCCATATGCATTATTCTTTTATGCTAAT
1 CATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGAC
60586 AATGTACCCATATA
66 AATGTACCCATATA
* * *
60600 CATTTCAGCTAGGGCATCCTTTCATGCCAATAATGTACCCATATGCATTATTCTTTTATGTTGAC
1 CATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGAC
* *
60665 GATGTATCCATATA
66 AATGTACCCATATA
* * *
60679 CATTTTAGCTATGGCATCC-TTCATGCCAATAATGCACCTATATGCATTATTCTTTTATGTTGAC
1 CATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGAC
* *
60743 AACGTAACCATATA
66 AATGTACCCATATA
* * * *
60757 CATTTCAGTTAGGGCATCATTTCATGCCAATAATGCACCCATATGCATTTTTCTTTTATGCTGAC
1 CATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGAC
60822 AATGTACCCATATA
66 AATGTACCCATATA
* * * *
60836 CATTTTAGGTATGTCATCCTTTCATGCCATTAATGCA-CCATATGCATTATTCTTTTA
1 CATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTA
60893 CTCAATGGTA
Statistics
Matches: 472, Mismatches: 57, Indels: 3
0.89 0.11 0.01
Matches are distributed among these distances:
78 88 0.19
79 384 0.81
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.38
Consensus pattern (79 bp):
CATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGAC
AATGTACCCATATA
Found at i:61002 original size:68 final size:68
Alignment explanation
Indices: 60893--61030 Score: 213
Period size: 68 Copynumber: 2.0 Consensus size: 68
60883 TATTCTTTTA
* *
60893 CTCAATGGTACTTAGCCGCTCATCTAACTAGCATAATTGACACCTTTCTATCAAGTACACAGTTA
1 CTCAAAGGTACTTAGCCGCTCATCTAACTAGCATAATTGACACCTTTCTATCAAATACACAGTTA
*
60958 GGC
66 AGC
** * *
60961 CTCAAAGGTACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATACACAGTTA
1 CTCAAAGGTACTTAGCCGCTCATCTAACTAGCATAATTGACACCTTTCTATCAAATACACAGTTA
61026 AGC
66 AGC
61029 CT
1 CT
61031 TTAATCTTTT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (68 bp):
CTCAAAGGTACTTAGCCGCTCATCTAACTAGCATAATTGACACCTTTCTATCAAATACACAGTTA
AGC
Found at i:61509 original size:59 final size:59
Alignment explanation
Indices: 61376--61758 Score: 513
Period size: 59 Copynumber: 6.5 Consensus size: 59
61366 TTTCTCATAC
* * * * * * *
61376 GGAAATTCATACACTTGGGATAAATTTCTTATCAT-TGTAGCACAC-AAGGTGCTC-ATCT
1 GGAAATTCATACACTTAGTATGAATTCCTTCTCATGT-TAGCACACGAA-GTGCCCTATAT
* * * *
61434 GGAAATTCATACACTTAATATGAATTCCTTCTCATGTTTGCACACAAAGAGCCCTATAT
1 GGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATAT
* * *
61493 GGAAATTCATATACTTAGTATGAATTCCTTCTCATGTTAGAACATGAAGTGCCCTATAT
1 GGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATAT
* * * *
61552 GGAAATTCATACACTTCGTATAAATTCATTCTCATGTTAGCACAC-AAGGTGCCCTATGT
1 GGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAA-GTGCCCTATAT
* *
61611 GGAAATTCATATACTTAGTATGAATTCCTTCTCATGTTAGCACATGAAGTGCCCTATAT
1 GGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATAT
61670 GGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATAT
1 GGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATAT
* *
61729 TGAAATTCATACACTTAGTGTGAATTCCTT
1 GGAAATTCATACACTTAGTATGAATTCCTT
61759 AACATTTTAC
Statistics
Matches: 286, Mismatches: 34, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
58 42 0.15
59 242 0.85
60 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (59 bp):
GGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATAT
Found at i:62223 original size:95 final size:95
Alignment explanation
Indices: 62101--62326 Score: 253
Period size: 95 Copynumber: 2.4 Consensus size: 95
62091 CTTGGCTCTA
* * * * **
62101 TAGTATCGATACTAC-TACCCTGGTATCGATACTTCTATGTTATGGT-TCCGAAACCCCCTTTTA
1 TAGTATCGATACT-CTTACCATGGTATCGATACTACCATGTTATGGTAT-CGAAACCCCATTCCA
* *
62164 GTATCGATACCAATTTTAGGTTCGATG-TTGCC
64 GTATCAATACCAATTTTAGATTCGATGATT-CC
* *
62196 TAGTATCGATACTCTTACCATGGTATCGATACTACCATGTTATGGTATCGATACCCCATTCCGGT
1 TAGTATCGATACTCTTACCATGGTATCGATACTACCATGTTATGGTATCGAAACCCCATTCCAGT
* * *
62261 ATTAATACTAATTTTTGATTCGATGATTCC
66 ATCAATACCAATTTTAGATTCGATGATTCC
* *
62291 TGGTATCGATAC-CTTTTCCATGGTATCGATACTACC
1 TAGTATCGATACTC-TTACCATGGTATCGATACTACC
62327 TCTTCAATAT
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
94 2 0.02
95 107 0.96
96 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (95 bp):
TAGTATCGATACTCTTACCATGGTATCGATACTACCATGTTATGGTATCGAAACCCCATTCCAGT
ATCAATACCAATTTTAGATTCGATGATTCC
Found at i:63769 original size:20 final size:20
Alignment explanation
Indices: 63723--63762 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
63713 TTTTTCGTTT
*
63723 TATAAAAATACTTATCTTTC
1 TATAAAAAGACTTATCTTTC
*
63743 TACAAAAAGACTTATCTTTC
1 TATAAAAAGACTTATCTTTC
63763 CTTAAAACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (20 bp):
TATAAAAAGACTTATCTTTC
Found at i:65988 original size:45 final size:45
Alignment explanation
Indices: 65880--66003 Score: 142
Period size: 45 Copynumber: 2.7 Consensus size: 45
65870 ATAATGCATC
* * *
65880 ATTATGCATTTTCATTTATGGCAATCGTTCATGCCTTTTTATATACT
1 ATTATACA-TTTCATTTATGGC-ATCTTTCATGCCTTTTTATACACT
* * *
65927 ATTATATATTTTATTTACGGCATCATTTCATGCC-TTTTATACACT
1 ATTATACATTTCATTTATGGCATC-TTTCATGCCTTTTTATACACT
*
65972 GTTATACATTTCATTTATGGCATCCTTTCATG
1 ATTATACATTTCATTTATGGCAT-CTTTCATG
66004 TCAATAATGA
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
45 39 0.60
46 20 0.31
47 6 0.09
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.48
Consensus pattern (45 bp):
ATTATACATTTCATTTATGGCATCTTTCATGCCTTTTTATACACT
Found at i:66105 original size:79 final size:79
Alignment explanation
Indices: 65974--66588 Score: 953
Period size: 79 Copynumber: 7.8 Consensus size: 79
65964 TATACACTGT
** * * *
65974 TATACATTTCATTTATGGCATCCTTTCATGTCAATAATGAACCCATATGCATTATTCTATTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
*
66039 TGACAATGTACCTA
66 TGACAATGTACCCA
* *
66053 TATACATTTCACCTATGACATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
66118 TGACAATGTACCCA
66 TGACAATGTACCCA
* * * *
66132 TATACATTTCAGCTATGACATCCTTTCATGCCAATAATGCGCCCATATACATTATTCTTTTATTC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
*
66197 TGACATTGTACCCA
66 TGACAATGTACCCA
* * *
66211 TATACATTTCAGTTAGGGCATCCTTTCATACCAATAATGCACCCATATGCATTATTCTTTTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
*
66276 TAACAATGTACCCA
66 TGACAATGTACCCA
* * *
66290 TATACATTTTAGCTAGGGCATCCTTTCATGCCAATAACGCACCCATATGCATTATTCTTTTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
66355 TGACAATGTACCCA
66 TGACAATGTACCCA
66369 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
*
66434 AGACAATGTACCCA
66 TGACAATGTACCCA
* *
66448 TATAAATTTGAGCT-TGGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATG
1 TATACATTTCAGCTAT-GGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATG
66512 CTGACAATGTACCCA
65 CTGACAATGTACCCA
* * * * * *
66527 TATACATTTCAGGTATGGCATCATTTCATGTCAATAATGCAACTATGTGCATTATTCTTTTA
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTA
66589 CTCAACGGTA
Statistics
Matches: 493, Mismatches: 41, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
78 1 0.00
79 491 1.00
80 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (79 bp):
TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
TGACAATGTACCCA
Found at i:67207 original size:59 final size:59
Alignment explanation
Indices: 67076--67330 Score: 354
Period size: 59 Copynumber: 4.3 Consensus size: 59
67066 TCCCATACGA
* * * * * *
67076 AAATTCATACACTTAGGATAAATTTCTTA-TCATTTTAGCACAC-AAGGTGCTC-ATCTGG
1 AAATTCATACACTTAGTATGAA-TTCCTACTCATGTTAGCACACGAA-GTGCCCTATATGG
*
67134 AAATTCATACACTTAGTATGAATTCCTACCCATGTTAGCACACGAAGTGCCCTATATGG
1 AAATTCATACACTTAGTATGAATTCCTACTCATGTTAGCACACGAAGTGCCCTATATGG
* * * *
67193 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACAAAGTGGCCTATGTGG
1 AAATTCATACACTTAGTATGAATTCCTACTCATGTTAGCACACGAAGTGCCCTATATGG
* *
67252 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACATGAAGTGCCCTATATGG
1 AAATTCATACACTTAGTATGAATTCCTACTCATGTTAGCACACGAAGTGCCCTATATGG
67311 AAATTCATACACTTAGTATG
1 AAATTCATACACTTAGTATG
67331 TTAGCACACA
Statistics
Matches: 178, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
57 5 0.03
58 37 0.21
59 136 0.76
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (59 bp):
AAATTCATACACTTAGTATGAATTCCTACTCATGTTAGCACACGAAGTGCCCTATATGG
Found at i:67286 original size:118 final size:117
Alignment explanation
Indices: 67076--67501 Score: 551
Period size: 118 Copynumber: 3.7 Consensus size: 117
67066 TCCCATACGA
* * * * * * *
67076 AAATTCATACACTTAGGATAAATTTCTTATCATTTTAGCACACAAGGTG-CTCATCTGGAAATTC
1 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACAAAGTGCCT-ATATGGAAATTC
* * *
67140 ATACACTTAGTATGAATTCCTACCCATGTTAGCACACGAAGTGCCCTATATGG
65 ATACACTTAGTATGAATTCCTTCTCATGTTAGCACATGAAGTGCCCTATATGG
*
67193 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACAAAGTGGCCTATGTGGAAATTC
1 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACAAAGT-GCCTATATGGAAATTC
67258 ATACACTTAGTATGAATTCCTTCTCATGTTAGCACATGAAGTGCCCTATATGG
65 ATACACTTAGTATGAATTCCTTCTCATGTTAGCACATGAAGTGCCCTATATGG
67311 AAATTCATACAC-T--TA-G---------T-ATGTTAGCACACAAAGTGCCCTATATGGAAATTC
1 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACAAAGTG-CCTATATGGAAATTC
* *
67362 ATACACTTAGTATGAATTCCTTCTCATGTTAGCATATTAAGTGCCCTATATGG
65 ATACACTTAGTATGAATTCCTTCTCATGTTAGCACATGAAGTGCCCTATATGG
* * *
67415 AAATTCATACACTTAGTATGAATTCTTTCTCATGTTAGCACA-AGAAGTGCTCAATATGAAAATT
1 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACA-AAGTGC-CTATATGGAAATT
67479 CATACACTTAGTATGAATTCCTT
64 CATACACTTAGTATGAATTCCTT
67502 AACATTTTGC
Statistics
Matches: 275, Mismatches: 15, Indels: 37
0.84 0.05 0.11
Matches are distributed among these distances:
103 1 0.00
104 94 0.34
105 2 0.01
107 2 0.01
108 1 0.00
114 1 0.00
115 2 0.01
117 46 0.17
118 124 0.45
119 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (117 bp):
AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACAAAGTGCCTATATGGAAATTCA
TACACTTAGTATGAATTCCTTCTCATGTTAGCACATGAAGTGCCCTATATGG
Found at i:67347 original size:45 final size:45
Alignment explanation
Indices: 67283--67375 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 45
67273 ATTCCTTCTC
**
67283 ATGTTAGCACATGAAGTGCCCTATATGGAAATTCATACACTTAGT
1 ATGTTAGCACACAAAGTGCCCTATATGGAAATTCATACACTTAGT
67328 ATGTTAGCACACAAAGTGCCCTATATGGAAATTCATACACTTAGT
1 ATGTTAGCACACAAAGTGCCCTATATGGAAATTCATACACTTAGT
67373 ATG
1 ATG
67376 AATTCCTTCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (45 bp):
ATGTTAGCACACAAAGTGCCCTATATGGAAATTCATACACTTAGT
Found at i:67404 original size:104 final size:104
Alignment explanation
Indices: 67224--67434 Score: 386
Period size: 104 Copynumber: 2.0 Consensus size: 104
67214 ATTCCTTCTC
* *
67224 ATGTTAGCACACAAAGTGGCCTATGTGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTA
1 ATGTTAGCACACAAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTA
67289 GCACATGAAGTGCCCTATATGGAAATTCATACACTTAGT
66 GCACATGAAGTGCCCTATATGGAAATTCATACACTTAGT
67328 ATGTTAGCACACAAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTA
1 ATGTTAGCACACAAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTA
* *
67393 GCATATTAAGTGCCCTATATGGAAATTCATACACTTAGT
66 GCACATGAAGTGCCCTATATGGAAATTCATACACTTAGT
67432 ATG
1 ATG
67435 AATTCTTTCT
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
104 103 1.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (104 bp):
ATGTTAGCACACAAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTA
GCACATGAAGTGCCCTATATGGAAATTCATACACTTAGT
Found at i:67420 original size:59 final size:59
Alignment explanation
Indices: 67328--67501 Score: 269
Period size: 59 Copynumber: 2.9 Consensus size: 59
67318 TACACTTAGT
67328 ATGTTAGCACACA-AAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTC
1 ATGTTAGCACA-AGAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTC
* ** *
67387 ATGTTAGCATATTAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCTTTCTC
1 ATGTTAGCACAAGAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTC
* * *
67446 ATGTTAGCACAAGAAGTGCTCAATATGAAAATTCATACACTTAGTATGAATTCCTT
1 ATGTTAGCACAAGAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTT
67502 AACATTTTGC
Statistics
Matches: 104, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
59 104 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.34
Consensus pattern (59 bp):
ATGTTAGCACAAGAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTC
Found at i:67435 original size:163 final size:163
Alignment explanation
Indices: 67165--67493 Score: 559
Period size: 163 Copynumber: 2.0 Consensus size: 163
67155 ATTCCTACCC
*
67165 ATGTTAGCACACGAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTA
1 ATGTTAGCACACAAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTA
* * *
67230 GCACACAAAGTGGCCTATGTGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACAT
66 GCACACAAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACAA
* *
67295 GAAGTGCCCTATATGGAAATTCATACACTTAGT
131 GAAGTGCCCAATATGAAAATTCATACACTTAGT
67328 ATGTTAGCACACAAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTA
1 ATGTTAGCACACAAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTA
* ** *
67393 GCATATTAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCTTTCTCATGTTAGCACAA
66 GCACACAAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACAA
*
67458 GAAGTGCTCAATATGAAAATTCATACACTTAGT
131 GAAGTGCCCAATATGAAAATTCATACACTTAGT
67491 ATG
1 ATG
67494 AATTCCTTAA
Statistics
Matches: 155, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
163 155 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (163 bp):
ATGTTAGCACACAAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTA
GCACACAAAGTGCCCTATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACAA
GAAGTGCCCAATATGAAAATTCATACACTTAGT
Found at i:70406 original size:2 final size:2
Alignment explanation
Indices: 70399--70426 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
70389 AAAATTACTC
70399 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70427 TAAATATACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75890 original size:21 final size:22
Alignment explanation
Indices: 75866--75916 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
75856 ATTGTCCAAT
* *
75866 AAACTTGACATTCATAACAA-C
1 AAACTTGAAATCCATAACAACC
75887 AAACTTGAAATCCATAACAACC
1 AAACTTGAAATCCATAACAACC
75909 AAA-TTGAA
1 AAACTTGAA
75917 CTCTATAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.51, C:0.22, G:0.06, T:0.22
Consensus pattern (22 bp):
AAACTTGAAATCCATAACAACC
Found at i:81851 original size:41 final size:41
Alignment explanation
Indices: 81733--81957 Score: 173
Period size: 41 Copynumber: 5.4 Consensus size: 41
81723 TATGACAATT
* * * * * *
81733 GCGGCGTTTGGTATTAAAACGCCACTAAAGTATGCGTCTATA
1 GCGGCATTT-GTATAAAAATGCCACTAAAGTACGAGTTTATA
* * * ** *
81775 GAGGCGTTTGTAAACACAAACACCACTAAAATACGAGTTTATA
1 GCGGCATTTGTATA-A-AAATGCCACTAAAGTACGAGTTTATA
* *
81818 GCAGTC-TTTGTGTAAAAATGCCACTAAAGTACGAGTTTATA
1 GC-GGCATTTGTATAAAAATGCCACTAAAGTACGAGTTTATA
* * *
81859 GCGGCATTTGTATAAAAATGCCACAAAAGTGCGAGTATATA
1 GCGGCATTTGTATAAAAATGCCACTAAAGTACGAGTTTATA
* * ** * * *
81900 GTGGCGTTCATATAAAAATGTCAGTAAAGTACTAGTTTATA
1 GCGGCATTTGTATAAAAATGCCACTAAAGTACGAGTTTATA
* *
81941 GCGACGTTTGTATAAAA
1 GCGGCATTTGTATAAAA
81958 TCGCCATTAC
Statistics
Matches: 145, Mismatches: 34, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
40 2 0.01
41 103 0.71
42 10 0.07
43 28 0.19
44 2 0.01
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.28
Consensus pattern (41 bp):
GCGGCATTTGTATAAAAATGCCACTAAAGTACGAGTTTATA
Found at i:83008 original size:11 final size:11
Alignment explanation
Indices: 82992--83020 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
82982 TAGACTCGAG
82992 TCCACTTGGTT
1 TCCACTTGGTT
83003 TCCACTTGGTT
1 TCCACTTGGTT
83014 TCCACTT
1 TCCACTT
83021 TGTCTCCGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.31, G:0.14, T:0.45
Consensus pattern (11 bp):
TCCACTTGGTT
Found at i:84538 original size:4 final size:4
Alignment explanation
Indices: 84529--84613 Score: 125
Period size: 4 Copynumber: 21.2 Consensus size: 4
84519 TTTTATGATA
* * *
84529 TATG TATG TATG TATG TATG TATG TATA TTTG TATG TATG TATA TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
84577 TATG TATG TATA TATG TATG TATG TATG TATA TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG T
84614 GTGTGTGTGT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 71 1.00
ACGTcount: A:0.28, C:0.00, G:0.20, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:84616 original size:2 final size:2
Alignment explanation
Indices: 84611--84698 Score: 160
Period size: 2 Copynumber: 44.5 Consensus size: 2
84601 TATGTATATA
*
84611 TG TG TG TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84653 TG TG TG TG TG TG TG TG T- TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84694 TG TG T
1 TG TG T
84699 TTATCGTATG
Statistics
Matches: 83, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
1 1 0.01
2 82 0.99
ACGTcount: A:0.01, C:0.00, G:0.48, T:0.51
Consensus pattern (2 bp):
TG
Found at i:86576 original size:30 final size:30
Alignment explanation
Indices: 86541--86598 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
86531 TTTTTCTGAT
*
86541 GACTAAATTAAAATTTTAATTAAATTTAAG
1 GACTAAAGTAAAATTTTAATTAAATTTAAG
** *
86571 GACTAAAGTGGAATTTTGATTAAATTTA
1 GACTAAAGTAAAATTTTAATTAAATTTA
86599 GATCTAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.40
Consensus pattern (30 bp):
GACTAAAGTAAAATTTTAATTAAATTTAAG
Found at i:89206 original size:85 final size:85
Alignment explanation
Indices: 88953--89311 Score: 222
Period size: 85 Copynumber: 4.2 Consensus size: 85
88943 AAATATGAAT
* * * * * ** ** **
88953 AATTGATTATGACTTGACGTCCTTCAAATAAAGGAACAAGATTGTTCTCCAATTTGGCA-TCTTT
1 AATTGATTACGACTTGGCATCCTTCAAAGAAAGGAGCAAGATCATTAACTGATTTGGCATTC-TT
* * * *
89017 CATAGAAAGGAGCAGATCAAC
65 CAAAGAAATGAGAAAATCAAC
* * ** * *
89038 CATTGTTTACGACTTGGTGTTCTTCAAAGAAAGGAGCAAGATCATTAATTGATTTGGCATTCTTC
1 AATTGATTACGACTTGGCATCCTTCAAAGAAAGGAGCAAGATCATTAACTGATTTGGCATTCTTC
* *
89103 AAAGAAATGAGTAGATCAAC
66 AAAGAAATGAGAAAATCAAC
* * * * * *
89123 AATTGATTATGACTTGGCATCCTTCATAGAAAGGAGCAATATTATTCACTGATTTGGCGTTCTTC
1 AATTGATTACGACTTGGCATCCTTCAAAGAAAGGAGCAAGATCATTAACTGATTTGGCATTCTTC
* *
89188 ACATATAAT-AGAAAATCAAC
66 AAAGA-AATGAGAAAATCAAC
* * * * * * * * * * *
89208 TATTGGTTACCAGTTTGCGTCCTTTAGAGAAAGGAGCAAGTTCATT--CTTCGATTTGGTATCCT
1 AATTGATTACGACTTGGCATCCTTCAAAGAAAGGAGCAAGATCATTAAC-T-GATTTGGCATTCT
* * *
89271 TTAGAGAAAGGAGAAAATCAAC
64 TCAAAGAAATGAGAAAATCAAC
* * *
89293 TATTGATGATGACTTGGCA
1 AATTGATTACGACTTGGCA
89312 ACCCTATTCT
Statistics
Matches: 209, Mismatches: 60, Indels: 10
0.75 0.22 0.04
Matches are distributed among these distances:
83 1 0.00
84 3 0.01
85 200 0.96
86 5 0.02
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (85 bp):
AATTGATTACGACTTGGCATCCTTCAAAGAAAGGAGCAAGATCATTAACTGATTTGGCATTCTTC
AAAGAAATGAGAAAATCAAC
Found at i:90710 original size:20 final size:20
Alignment explanation
Indices: 90680--90724 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
90670 TCTAAATTAA
90680 TTATT-TTTCC-TTTACTTTT
1 TTATTCTTTCCTTTTA-TTTT
90699 TTATTCTTTCCTTTTATTTT
1 TTATTCTTTCCTTTTATTTT
90719 TTATTC
1 TTATTC
90725 AATATAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.21
20 15 0.62
21 4 0.17
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (20 bp):
TTATTCTTTCCTTTTATTTT
Found at i:92179 original size:5 final size:5
Alignment explanation
Indices: 92122--92161 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
92112 GAGGACACCA
92122 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
92162 TCATAAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:92193 original size:20 final size:19
Alignment explanation
Indices: 92127--92195 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 19
92117 CACCAATTTT
*
92127 ATTTTATTTTATT-TTATTTT
1 ATTTTATTTTATTATTA--TA
*
92147 ATTTTATTTTATTTTTCATA
1 ATTTTATTTTATTATT-ATA
**
92167 AAATTATTTTATTAATTATA
1 ATTTTATTTTATT-ATTATA
92187 ATTTTATTT
1 ATTTTATTT
92196 CAATTATTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
20 35 0.88
21 4 0.10
22 1 0.03
ACGTcount: A:0.29, C:0.01, G:0.00, T:0.70
Consensus pattern (19 bp):
ATTTTATTTTATTATTATA
Found at i:95501 original size:151 final size:151
Alignment explanation
Indices: 95227--95520 Score: 462
Period size: 151 Copynumber: 1.9 Consensus size: 151
95217 TGACGCTTGT
* * * * **
95227 CAATGATGCATTTATTATCAAACGAAGATCATGAAGGAAAGCTCACAAGGTAACAAATATTTACC
1 CAATGATGCATTTATTATAAAAAGAAGATCATGAAGGAAAACTCAAAAGGTAACAAATACGTACC
* *
95292 ACTATCATGTGGAGTTATTTTATATTGTTACATATATGCAACTTCAAGAGCTTAACAATTGTTTT
66 ACTATCATGTGGAGTTATTTTATATTGTTACAGATATGCAACTTCAAGAGATTAACAATTGTTTT
* *
95357 AGTGAAGCAAACATAGATATG
131 AGTAAAGAAAACATAGATATG
* * * *
95378 CAATGATGCATTTATTTTAAAAAGAAGTTCATGTAGTAAAACTCAAAAGGTAACAAATACGTACC
1 CAATGATGCATTTATTATAAAAAGAAGATCATGAAGGAAAACTCAAAAGGTAACAAATACGTACC
95443 ACTATCATGTGGAGTTATTTTATATTGTTACAGATATGCAACTTCAAGAGATTAACAATTGTTTT
66 ACTATCATGTGGAGTTATTTTATATTGTTACAGATATGCAACTTCAAGAGATTAACAATTGTTTT
95508 AGTAAAGAAAACA
131 AGTAAAGAAAACA
95521 CAAAGTTGTT
Statistics
Matches: 129, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
151 129 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (151 bp):
CAATGATGCATTTATTATAAAAAGAAGATCATGAAGGAAAACTCAAAAGGTAACAAATACGTACC
ACTATCATGTGGAGTTATTTTATATTGTTACAGATATGCAACTTCAAGAGATTAACAATTGTTTT
AGTAAAGAAAACATAGATATG
Found at i:98484 original size:90 final size:90
Alignment explanation
Indices: 98370--98636 Score: 473
Period size: 90 Copynumber: 3.0 Consensus size: 90
98360 TAATCCCGAA
* *
98370 TATTTAATTTTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGAT
1 TATTAAATTATAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGAT
98435 TAGGGTAACTTGGATATAAAAGGAT
66 TAGGGTAACTTGGATATAAAAGGAT
* *
98460 TATTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATTAT
1 TATTAAATTATAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGAT
98525 TAGGGTAACTTGGATATAAAAGGAT
66 TAGGGTAACTTGGATATAAAAGGAT
*
98550 TATTAAATTATAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAA-CCCTAATATGAT
1 TATTAAATTATAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGAT
*
98614 TAGGGTAACTTGGCTATAAAAGG
66 TAGGGTAACTTGGATATAAAAGG
98637 GTGTGTTAGG
Statistics
Matches: 170, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
89 32 0.19
90 138 0.81
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.39
Consensus pattern (90 bp):
TATTAAATTATAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGAT
TAGGGTAACTTGGATATAAAAGGAT
Found at i:115645 original size:19 final size:18
Alignment explanation
Indices: 115621--115656 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
115611 TACTAATCAA
*
115621 TTTTGTTTTATTGTTTTTT
1 TTTTGTTTCA-TGTTTTTT
115640 TTTTGTTTCATGTTTTT
1 TTTTGTTTCATGTTTTT
115657 CATATACATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.06, C:0.03, G:0.11, T:0.81
Consensus pattern (18 bp):
TTTTGTTTCATGTTTTTT
Found at i:117721 original size:46 final size:46
Alignment explanation
Indices: 117665--117903 Score: 302
Period size: 46 Copynumber: 5.2 Consensus size: 46
117655 AAACGAATCT
* * * *
117665 ATAAACGAAATGCACGAAGGGATGCATTAAGGCATGAAAGTATGCC
1 ATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCC
* * *
117711 ATAAATGAAATGCATGAAATGATGCATTAAGCCATGAAAGGATACC
1 ATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCC
* * * *
117757 ATAAATGAAATACATGAAATGATGCATTAAGGTATAAAAGGATGCC
1 ATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCC
* * *
117803 ATAAATGAAATGCATGAAAGGATGTATTAAGGCATGAAAAGATACC
1 ATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCC
** * *
117849 ATAAATGAAATGCAT-ATTGG-TGCATTAAGGCATGAAATGAGGCC
1 ATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCC
117893 ATAAATGAAAT
1 ATAAATGAAAT
117904 TAACGAATAA
Statistics
Matches: 168, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 31 0.18
45 3 0.02
46 134 0.80
ACGTcount: A:0.45, C:0.11, G:0.22, T:0.22
Consensus pattern (46 bp):
ATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCC
Found at i:117735 original size:26 final size:26
Alignment explanation
Indices: 117696--117826 Score: 90
Period size: 26 Copynumber: 5.5 Consensus size: 26
117686 ATGCATTAAG
*
117696 GCATGAAAGTATGCCATAAATGAAAT
1 GCATGAAAGGATGCCATAAATGAAAT
*
117722 GCATGAAATGATG-CAT---T--AA-
1 GCATGAAAGGATGCCATAAATGAAAT
*
117741 GCCATGAAAGGATACCATAAATGAAAT
1 G-CATGAAAGGATGCCATAAATGAAAT
* * *
117768 ACATGAAATGATG-CAT---T--AAG
1 GCATGAAAGGATGCCATAAATGAAAT
* *
117788 GTATAAAAGGATGCCATAAATGAAAT
1 GCATGAAAGGATGCCATAAATGAAAT
117814 GCATGAAAGGATG
1 GCATGAAAGGATG
117827 TATTAAGGCA
Statistics
Matches: 76, Mismatches: 15, Indels: 28
0.64 0.13 0.24
Matches are distributed among these distances:
19 1 0.01
20 23 0.30
21 6 0.08
22 2 0.03
24 2 0.03
25 6 0.08
26 36 0.47
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.22
Consensus pattern (26 bp):
GCATGAAAGGATGCCATAAATGAAAT
Found at i:125946 original size:79 final size:79
Alignment explanation
Indices: 125848--126461 Score: 773
Period size: 79 Copynumber: 7.8 Consensus size: 79
125838 TATACAACAT
** * * * * **
125848 TATACATTTCATTTCTGGCATCTTTTTATGCCAATAATGCACCCATATGCATTATTCTATTATAT
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
*
125913 TGACTATGTACCCA
66 TGACAATGTACCCA
* * * * *
125927 TATATATTTCAGCTATGGCATCCTTCCATGCCAATAATGCACCAATATACACTATTCTTTTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
*
125992 TAACAATGTACCCA
66 TGACAATGTACCCA
* * * *
126006 TATACATTTCACCTATGCCATCCTTTCATGCTAATAATGCACCCATATGTATTATTCTTTTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
*
126071 TGATAATGTACCCA
66 TGACAATGTACCCA
* * * * * *
126085 TGTACATTTCATCTAGGGCTTTCTTTCATGCCAATAATGCATCCATATGCATTATTCTTTTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
* * *
126150 TAATAATATACCCA
66 TGACAATGTACCCA
* *
126164 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGTACCCATATGCATTATTCTTTTATGT
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
* *
126229 TAACGATGTACCCA
66 TGACAATGTACCCA
* * * *
126243 TATACATTTTAGCTGTGGCATCATTTCATGCCAATAATGCACCTATATGCATTATTCTTTTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
*
126308 TGACAACGTACCCA
66 TGACAATGTACCCA
* * * *
126322 TATACATTTTAGTTAGGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTTTTTTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
*
126387 TGACAATGTATCCA
66 TGACAATGTACCCA
* * * * *
126401 TATACAATTT-AGGTATGTCATCCTTTCATGCCATTAATGCA-CCATATACATTTTTCTTTTA
1 TATAC-ATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTA
126462 CTCAATGGTA
Statistics
Matches: 462, Mismatches: 72, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
78 17 0.04
79 441 0.95
80 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.39
Consensus pattern (79 bp):
TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
TGACAATGTACCCA
Found at i:126571 original size:68 final size:68
Alignment explanation
Indices: 126462--126599 Score: 204
Period size: 68 Copynumber: 2.0 Consensus size: 68
126452 TTTTCTTTTA
* * * *
126462 CTCAATGGTACTTAGCCGCTCATCTAACTAGCATAATTGACACCTTTCTGTCAAGTACACAGTTA
1 CTCAAAGGTACTTAGCCGCTCATCTAACTAGCATAATTGACACCTTCCTATCAAATACACAGTTA
*
126527 GGC
66 AGC
** *
126530 CTCAAAGGTACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTCCTATCAAATACACAGTTA
1 CTCAAAGGTACTTAGCCGCTCATCTAACTAGCATAATTGACACCTTCCTATCAAATACACAGTTA
126595 AGC
66 AGC
126598 CT
1 CT
126600 TTAATCTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (68 bp):
CTCAAAGGTACTTAGCCGCTCATCTAACTAGCATAATTGACACCTTCCTATCAAATACACAGTTA
AGC
Found at i:127080 original size:59 final size:59
Alignment explanation
Indices: 127006--127331 Score: 481
Period size: 59 Copynumber: 5.5 Consensus size: 59
126996 GGTGCTCATC
* * *
127006 TGGAAATTCATACACTTAATATGAATTCCTTCTCATGTTTGCACACAAAGTGCCCTATA
1 TGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATA
* * * *
127065 TGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGAATATGAAGTACCCTATA
1 TGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATA
* * *
127124 TGGAAATTCATACACTTAGTATGAATTCATTCTCATGTTAGCACACAAAGTGCCCTATG
1 TGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATA
* * * *
127183 TGGAAATTCATATACTTAGTATAAATTCCTTCTCATGTTAGCACATGAAGTGTCCTATA
1 TGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATA
* *
127242 AGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACATGAAGTGCCCTATA
1 TGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATA
* * *
127301 TTGAAATTCATACACATAGTGTGAATTCCTT
1 TGGAAATTCATACACTTAGTATGAATTCCTT
127332 AACATTTTGC
Statistics
Matches: 238, Mismatches: 29, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 238 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (59 bp):
TGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATA
Found at i:127216 original size:177 final size:175
Alignment explanation
Indices: 126949--127328 Score: 521
Period size: 177 Copynumber: 2.2 Consensus size: 175
126939 TTTCCCATAC
* * * *
126949 GGAAATTCATACACTTGGGATAAAATTCTTATCAGTGTAGCACAAAAGGTGCTCATCTGGAAATT
1 GGAAATTCATACACTTAGTAT-GAATTCTTATCAGTGTAGCACAAAAGGTGCCCATCTGGAAATT
* * *
127014 CATACACTTAATATGAATTCCTTCTCATGTTTGCACACAAAGTGCCCTATATGGAAATTCATACA
65 CATACACTTAATATAAATTCCTTCTCATGTTAGCACACAAAGTGCCCTATAAGGAAATTCATACA
*
127079 CTTAGTATGAATTCCTTCTCATGTTAGAATATGAAGTACCCTATAT
130 CTTAGTATGAATTCCTTCTCATGTTAGAACATGAAGTACCCTATAT
* *
127125 GGAAATTCATACACTTAGTATGAATTCATTCTCA-TGTTAGCACACAAA-GTGCCCTATGTGGAA
1 GGAAATTCATACACTTAGTATGAATTC-TTATCAGTG-TAGCACA-AAAGGTGCCC-ATCTGGAA
* * ** *
127188 ATTCATATACTTAGTATAAATTCCTTCTCATGTTAGCACATGAAGTGTCCTATAAGGAAATTCAT
62 ATTCATACACTTAATATAAATTCCTTCTCATGTTAGCACACAAAGTGCCCTATAAGGAAATTCAT
* *
127253 ACACTTAGTATGAATTCCTTCTCATGTTAGCACATGAAGTGCCCTATAT
127 ACACTTAGTATGAATTCCTTCTCATGTTAGAACATGAAGTACCCTATAT
* * *
127302 TGAAATTCATACACATAGTGTGAATTC
1 GGAAATTCATACACTTAGTATGAATTC
127329 CTTAACATTT
Statistics
Matches: 180, Mismatches: 20, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
175 7 0.04
176 36 0.20
177 137 0.76
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (175 bp):
GGAAATTCATACACTTAGTATGAATTCTTATCAGTGTAGCACAAAAGGTGCCCATCTGGAAATTC
ATACACTTAATATAAATTCCTTCTCATGTTAGCACACAAAGTGCCCTATAAGGAAATTCATACAC
TTAGTATGAATTCCTTCTCATGTTAGAACATGAAGTACCCTATAT
Found at i:129022 original size:19 final size:20
Alignment explanation
Indices: 128998--129037 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
128988 TATCCTGTCT
128998 TTATTTCATATCATT-CTTA
1 TTATTTCATATCATTACTTA
* *
129017 TTATTTCTTTTCATTACTTA
1 TTATTTCATATCATTACTTA
129037 T
1 T
129038 ATTATTATCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATTTCATATCATTACTTA
Found at i:131565 original size:95 final size:95
Alignment explanation
Indices: 131393--131633 Score: 249
Period size: 95 Copynumber: 2.6 Consensus size: 95
131383 CTTCACAATC
* * * * * * * **
131393 AGTATCGATATTAC-TACCCTGGTACCGATACTTCTATGTTATGGTACCGATACCCCTTTTTAGT
1 AGTATCGATACT-CTTACCATGGTATCGATACTACCATGTTATGGTATCGATACCCCATTCCAGT
* *
131457 ATCGATACCAATTTTAGGTTCGATG-TTGCCT
65 ATCAATACCAATTTTAGATTCGATGATT-CCT
*
131488 AGTATCGATACTCTTACCATGGTATCGATACTACCATGTTATGGTATCGATACCCCATTCCGGTA
1 AGTATCGATACTCTTACCATGGTATCGATACTACCATGTTATGGTATCGATACCCCATTCCAGTA
* * *
131553 TTAATACTAATTTTTGATTCGATGATTCCT
66 TCAATACCAATTTTAGATTCGATGATTCCT
* * * *
131583 GGTATCGATAC-CTTTTCCATGGTATCGATACTACC-TCTT-TGGTATTGATAC
1 AGTATCGATACTC-TTACCATGGTATCGATACTACCATGTTATGGTATCGATAC
131634 TGACTGAATC
Statistics
Matches: 124, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
93 11 0.09
94 5 0.04
95 106 0.85
96 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (95 bp):
AGTATCGATACTCTTACCATGGTATCGATACTACCATGTTATGGTATCGATACCCCATTCCAGTA
TCAATACCAATTTTAGATTCGATGATTCCT
Found at i:133028 original size:20 final size:20
Alignment explanation
Indices: 133003--133045 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
132993 GTTTTTTTCG
133003 TTCTACAAAAAGACTTATCT
1 TTCTACAAAAAGACTTATCT
*
133023 TTCTACAAGAAGACTTATCT
1 TTCTACAAAAAGACTTATCT
133043 TTC
1 TTC
133046 CTTAAAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (20 bp):
TTCTACAAAAAGACTTATCT
Found at i:135284 original size:45 final size:46
Alignment explanation
Indices: 135202--135301 Score: 123
Period size: 45 Copynumber: 2.2 Consensus size: 46
135192 TATGTCAATT
* * * *
135202 TTTCATTCCTTTTTATATACTATTATATATTTTATTTACGGCATCA
1 TTTCATGCCTTTTTATACACTATTATAAATTTCATTTACGGCATCA
* *
135248 TTTCATGCC-TTTTATACAC-AGTTATAAATTTCATTTATGGCATCT
1 TTTCATGCCTTTTTATACACTA-TTATAAATTTCATTTACGGCATCA
135293 TTTCATGCC
1 TTTCATGCC
135302 AATAATGCAC
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
44 1 0.02
45 38 0.81
46 8 0.17
ACGTcount: A:0.25, C:0.18, G:0.07, T:0.50
Consensus pattern (46 bp):
TTTCATGCCTTTTTATACACTATTATAAATTTCATTTACGGCATCA
Found at i:135424 original size:79 final size:79
Alignment explanation
Indices: 135283--135962 Score: 1038
Period size: 79 Copynumber: 8.6 Consensus size: 79
135273 AAATTTCATT
* * *
135283 TATGGCATCTTTTCATGCCAATAATGCACCCATATGCATTATTCTATTATACTGACAATGTACCC
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGACAATGTACCC
*
135348 ATATACATTTAAGC
66 ATATACATTTCAGC
* *
135362 TATGACATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTATTATGCTGACAATGTA-CC
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGACAATGTACCC
135426 ATATACATTTCAGC
66 ATATACATTTCAGC
*
135440 TATGACATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGACAATGTACCC
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGACAATGTACCC
*
135505 GTATACATTTCAGC
66 ATATACATTTCAGC
* **
135519 TATGACATCCTTTCATGCCAATAATGTGCCCATATGCATTATTCTTTTATGCTGACAATGTACCC
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGACAATGTACCC
135584 ATATACATTTCAGC
66 ATATACATTTCAGC
** * * * * *
135598 TATGTTATCCTTTCATACCAATAATGCACCCAAATGCATTATTCTTTTATGCTAATAATGTACTC
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGACAATGTACCC
*
135663 ATATACATTTTAGC
66 ATATACATTTCAGC
* * * * *
135677 TAGGGCATCCTTTCAAGCCAATAACGCATCCATATGCTTTATTCTTTTATGCTGACAATGTACCC
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGACAATGTACCC
*
135742 ATATACATTTCAGT
66 ATATACATTTCAGC
* *
135756 TATGGCATCCTTTCATGCCAATAATGCACCCGTATGCATTATTCTTTTATGCGGACAATGTACCC
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGACAATGTACCC
* *
135821 ATATATATTTGAGC
66 ATATACATTTCAGC
* * *
135835 TAGGGCATCCTTTCATGCCAATAATGCACCCATATGCGTTATTCTTTTTTGCTGACAATGTACCC
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGACAATGTACCC
*
135900 ATATACATTTCAGG
66 ATATACATTTCAGC
* *
135914 TATGGCATCATTTCATGCCAATAATGCACGCATATGCATTATTCTTTTA
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTA
135963 CTCAACGGTA
Statistics
Matches: 544, Mismatches: 56, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
78 76 0.14
79 468 0.86
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (79 bp):
TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGACAATGTACCC
ATATACATTTCAGC
Found at i:136580 original size:59 final size:59
Alignment explanation
Indices: 136449--136888 Score: 650
Period size: 59 Copynumber: 7.5 Consensus size: 59
136439 TCCCATACGA
* * * * * * ** *
136449 AAATTTATACACTTAGGATAAATTTCTTATCATTTTAGCACAC-AAG-GTTCTCATTTGG
1 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCT-ATATGG
*
136507 AAATTCATACACTTAGTATGAATTCCTTCCCATGTTAGCACACGAAGTGCCCTATATGG
1 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATATGG
* * * *
136566 AAATTCATAGACTTAGTATGAATTCCTTCTCATGTTAGGACACAAAGTGGCCTATATGG
1 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATATGG
* *
136625 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACATGAAGTGGCCTATATGG
1 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATATGG
*
136684 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACAAAGTGCCCTATATGG
1 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATATGG
* *
136743 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCATATGAAGTGCCCTATATGG
1 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATATGG
* * *
136802 AAATTCATACACTTAGTATGAATTCCTTCTCATGCTAGCACAAGAAGTGCTCTATATGG
1 AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATATGG
*
136861 AAATTCATACACTTAGTATTAATTCCTT
1 AAATTCATACACTTAGTATGAATTCCTT
136889 AACATTTTGC
Statistics
Matches: 350, Mismatches: 30, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
58 36 0.10
59 311 0.89
60 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (59 bp):
AAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCTATATGG
Found at i:139035 original size:94 final size:95
Alignment explanation
Indices: 138850--139070 Score: 268
Period size: 94 Copynumber: 2.3 Consensus size: 95
138840 GCTCCATAGT
* * * * *
138850 ATCGATACGAC-TACCCTGGTATCGATACTTCTATGCTATGGTACTGATATCCCCTTTTGGTATC
1 ATCGATAC-ACTTACCATGGTATCGATACTACCATGCTATGGTACTGATACCCCCTTTCGGTATC
*
138914 GATACCAAGTTTAGGTTCGATGTTTCCTAGC
65 GATACCAAGTTTAGGTTCGATGATTCCTAGC
138945 ATCGATA-ACTTACCATGGTATCGATACTACCATGCTATGGTACTGATACCCCCTTTCGGTATCG
1 ATCGATACACTTACCATGGTATCGATACTACCATGCTATGGTACTGATACCCCCTTTCGGTATCG
* * * * * *
139009 ATACTAATTTTTGATTTC-ATGATTCCTGGT
66 ATACCAAGTTTAG-GTTCGATGATTCCTAGC
* * *
139039 ATCGATACCCTTACCATGGTATCTATATTACC
1 ATCGATACACTTACCATGGTATCGATACTACC
139071 TCTTCGGTAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
93 2 0.02
94 75 0.69
95 31 0.29
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (95 bp):
ATCGATACACTTACCATGGTATCGATACTACCATGCTATGGTACTGATACCCCCTTTCGGTATCG
ATACCAAGTTTAGGTTCGATGATTCCTAGC
Found at i:139712 original size:2 final size:2
Alignment explanation
Indices: 139705--139732 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
139695 AAAATTACTC
139705 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
139733 TAAATATACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:141182 original size:53 final size:55
Alignment explanation
Indices: 141111--141225 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 55
141101 TTGCACTTTT
* * * *
141111 AGTGCCAATACGATAATTCA-CAATTTGTTATGAATTAGGT-AGTTTGCACACAC
1 AGTGCCAATACGATAATTCATAAACTTATTATGAATTACGTAAGTTTGCACACAC
* * *
141164 AGTGCCAATACGGA-AATTCATAAACTTATTATGAATTTCTTAAGTTTGCACACAT
1 AGTGCCAATAC-GATAATTCATAAACTTATTATGAATTACGTAAGTTTGCACACAC
141219 AGTGCCA
1 AGTGCCA
141226 TTTCGAAATC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 17 0.33
54 16 0.31
55 19 0.37
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (55 bp):
AGTGCCAATACGATAATTCATAAACTTATTATGAATTACGTAAGTTTGCACACAC
Found at i:141703 original size:19 final size:21
Alignment explanation
Indices: 141657--141708 Score: 72
Period size: 19 Copynumber: 2.5 Consensus size: 21
141647 TTTGTCTCTT
*
141657 GGTATCGATACTTCTATAATAT
1 GGTATCGATACTTCTAT-ATAC
141679 GGTATCGATAC-TCTAT-TAC
1 GGTATCGATACTTCTATATAC
141698 GGTATCGATAC
1 GGTATCGATAC
141709 CAATTCTGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 13 0.45
21 5 0.17
22 11 0.38
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (21 bp):
GGTATCGATACTTCTATATAC
Found at i:145234 original size:21 final size:22
Alignment explanation
Indices: 145210--145260 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
145200 ATTATCCAAT
* *
145210 AAACTTGACATTCATAACAA-C
1 AAACTTGAAATCCATAACAACC
145231 AAACTTGAAATCCATAACAACC
1 AAACTTGAAATCCATAACAACC
145253 AAA-TTGAA
1 AAACTTGAA
145261 CTCTATAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.51, C:0.22, G:0.06, T:0.22
Consensus pattern (22 bp):
AAACTTGAAATCCATAACAACC
Found at i:150959 original size:41 final size:41
Alignment explanation
Indices: 150906--151071 Score: 170
Period size: 41 Copynumber: 4.0 Consensus size: 41
150896 ACACAAACAT
* * * *
150906 CACTAAAATACGAATTTATAGCAGTGTTTGTGTAAAAATGC
1 CACTAAAGTACGAGTTTATAGCGGTGTTTGTATAAAAATGC
* *
150947 CACTAAAGTACGAGTTTATAACGGCGTTTGTATAAAAATGC
1 CACTAAAGTACGAGTTTATAGCGGTGTTTGTATAAAAATGC
* * * * ** *
150988 CACAAAAGTGCGAGTATATAGTGGTGTTCATATAAAAATGT
1 CACTAAAGTACGAGTTTATAGCGGTGTTTGTATAAAAATGC
* * ** *
151029 CAGTAAAGTACTAGTTTATAGCGACGTTTGTATAAAAACGC
1 CACTAAAGTACGAGTTTATAGCGGTGTTTGTATAAAAATGC
151070 CA
1 CA
151072 TTACATTGCA
Statistics
Matches: 98, Mismatches: 27, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
41 98 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (41 bp):
CACTAAAGTACGAGTTTATAGCGGTGTTTGTATAAAAATGC
Found at i:153901 original size:4 final size:4
Alignment explanation
Indices: 153894--155318 Score: 1849
Period size: 4 Copynumber: 360.2 Consensus size: 4
153884 ACGTACATAC
153894 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
153942 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTGT GTAT G--T
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
153988 GTAT GTGT GTAT GTAT GTAT GTAT GTAT GTAT G--T GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
154034 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* *
154082 GTAT GTAT GTAT GTAT GTGT GTAT GTAT GTAT GTAT GTAT ATAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
154130 GTAT GTAT GTAT GTAT GTAT GTAT GTAT ATAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * * *
154178 GTAT GTAT GTAT GTGT CTAT GTGT CTAT GTGT GTAT GTGT GTAT GTGT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * *
154226 GTAT GTGT GTAT GTGT GTAT GTGT GTTT GTGT GTAT GTGT GTA- -TAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * *
154272 GTAT GTGT GTGT GTAT GTGT GTAT GTAT GTAT GT-T GTTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G-TAT GTAT GTAT
* *
154320 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GCAT GTAT GCAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * *
154368 GCAT GCAT GTAT GCAT GCAT GTAT GTAT GCAT GTAT GCAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * *
154416 GTAT GTAT GTAT GTAT GCAT GCAT GGAT GTGT GTAT GTGT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* *
154464 GTAT GTAT GTAT GTGT GTAT GTAT GTAT GTAT GTGT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * * *
154512 GTGT GTAT GTAT GTGT GTAT GTGT ATGT GTAT GTGT GTAT GTTT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * *
154560 ATGT GTAT G--T GTAT GTGT GTAT G--T GTAT GTGT GTAT G--T GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
154602 GTGT GTAT GTAT GTA- -TAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
154648 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
154696 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
154744 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTGT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
154792 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * *
154840 ATAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTGT CTAT GTGT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * * *
154888 CTAT GTGT GTAT GTGT GTAT GTGT GTAT GTGT GTAT GTGT GTAT GTGT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * *
154936 GTTT GTGT GTAT GTGT GTAT GTAT GTAT GTAT GTGT GTAT GTGT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * *
154984 GTAT ATAT GTAT GTTT GTAT GTAT GTAT GTAT GTAT ATAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * * * *
155032 ATAT GTAT GTAT G--T GTAT GTGT GTGT GTGT GTGT GTGT GTGT GTGT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * * * * * * * *
155078 GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT GTGT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * *
155126 GTGT GTGT GTAT GTAT GTAT GTAT ATAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
155174 GTAT GTAT GTAT GTAT GTAT GTAT GTAT ATAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * *
155222 ATAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT ATCT GTAT GTAT GTAC
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
155270 GTAT ATAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
155318 G
1 G
155319 CTTGCGTGCG
Statistics
Matches: 1266, Mismatches: 137, Indels: 36
0.88 0.10 0.03
Matches are distributed among these distances:
2 16 0.01
3 2 0.00
4 1246 0.98
5 2 0.00
ACGTcount: A:0.21, C:0.01, G:0.28, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:155316 original size:8 final size:8
Alignment explanation
Indices: 153652--155318 Score: 2029
Period size: 8 Copynumber: 210.5 Consensus size: 8
153642 TATACGATTT
153652 TATG-ATG
1 TATGTATG
*
153659 TATGTACG
1 TATGTATG
* *
153667 TACGTACG
1 TATGTATG
*
153675 TATGTACG
1 TATGTATG
*
153683 TACGTATG
1 TATGTATG
*
153691 TATGTACG
1 TATGTATG
153699 TATGTATG
1 TATGTATG
153707 TATGTATG
1 TATGTATG
153715 TATGTATG
1 TATGTATG
*
153723 TATGTATA
1 TATGTATG
153731 TATGTATG
1 TATGTATG
153739 TATGTATG
1 TATGTATG
153747 TATGTATG
1 TATGTATG
153755 TATGTATG
1 TATGTATG
*
153763 TATATATG
1 TATGTATG
*
153771 TACGTATG
1 TATGTATG
**
153779 TACATATG
1 TATGTATG
*
153787 TACGTATG
1 TATGTATG
*
153795 TACGTATG
1 TATGTATG
*
153803 TACGTATG
1 TATGTATG
*
153811 TACGTATG
1 TATGTATG
* *
153819 TACGTAGG
1 TATGTATG
* *
153827 TACGTAGG
1 TATGTATG
* *
153835 TACGTACG
1 TATGTATG
* *
153843 TACGTACG
1 TATGTATG
*
153851 TATGTACG
1 TATGTATG
* *
153859 TAAGTAGG
1 TATGTATG
* *
153867 TACGTACG
1 TATGTATG
*
153875 TATGTACG
1 TATGTATG
* **
153883 TACGTACA
1 TATGTATG
*
153891 TACGTATG
1 TATGTATG
153899 TATGTATG
1 TATGTATG
153907 TATGTATG
1 TATGTATG
153915 TATGTATG
1 TATGTATG
153923 TATGTATG
1 TATGTATG
153931 TATGTATG
1 TATGTATG
153939 TATGTATG
1 TATGTATG
153947 TATGTATG
1 TATGTATG
153955 TATGTATG
1 TATGTATG
153963 TATGTATG
1 TATGTATG
153971 TATGTATG
1 TATGTATG
*
153979 TGTGTATG
1 TATGTATG
153987 --TGTATG
1 TATGTATG
*
153993 TGTGTATG
1 TATGTATG
154001 TATGTATG
1 TATGTATG
154009 TATGTATG
1 TATGTATG
154017 TATG--TG
1 TATGTATG
154023 TATGTATG
1 TATGTATG
154031 TATGTATG
1 TATGTATG
154039 TATGTATG
1 TATGTATG
154047 TATGTATG
1 TATGTATG
154055 TATGTATG
1 TATGTATG
154063 TATGTATG
1 TATGTATG
154071 TATGTATG
1 TATGTATG
154079 TATGTATG
1 TATGTATG
154087 TATGTATG
1 TATGTATG
*
154095 TATGTGTG
1 TATGTATG
154103 TATGTATG
1 TATGTATG
154111 TATGTATG
1 TATGTATG
*
154119 TATATATG
1 TATGTATG
154127 TATGTATG
1 TATGTATG
154135 TATGTATG
1 TATGTATG
154143 TATGTATG
1 TATGTATG
*
154151 TATGTATA
1 TATGTATG
154159 TATGTATG
1 TATGTATG
154167 TATGTATG
1 TATGTATG
154175 TATGTATG
1 TATGTATG
154183 TATGTATG
1 TATGTATG
* *
154191 TGTCTATG
1 TATGTATG
* *
154199 TGTCTATG
1 TATGTATG
*
154207 TGTGTATG
1 TATGTATG
*
154215 TGTGTATG
1 TATGTATG
*
154223 TGTGTATG
1 TATGTATG
*
154231 TGTGTATG
1 TATGTATG
*
154239 TGTGTATG
1 TATGTATG
* *
154247 TGTGTTTG
1 TATGTATG
*
154255 TGTGTATG
1 TATGTATG
*
154263 TGTGTA--
1 TATGTATG
154269 TATGTATG
1 TATGTATG
* *
154277 TGTGTGTG
1 TATGTATG
*
154285 TATGTGTG
1 TATGTATG
154293 TATGTATG
1 TATGTATG
154301 TATGT-TG
1 TATGTATG
154308 TTATGTATG
1 -TATGTATG
154317 TATGTATG
1 TATGTATG
154325 TATGTATG
1 TATGTATG
154333 TATGTATG
1 TATGTATG
154341 TATGTATG
1 TATGTATG
154349 TATGTATG
1 TATGTATG
*
154357 CATGTATG
1 TATGTATG
* *
154365 CATGCATG
1 TATGTATG
*
154373 CATGTATG
1 TATGTATG
* *
154381 CATGCATG
1 TATGTATG
154389 TATGTATG
1 TATGTATG
*
154397 CATGTATG
1 TATGTATG
*
154405 CATGTATG
1 TATGTATG
154413 TATGTATG
1 TATGTATG
154421 TATGTATG
1 TATGTATG
*
154429 TATGCATG
1 TATGTATG
* *
154437 CATGGATG
1 TATGTATG
*
154445 TGTGTATG
1 TATGTATG
*
154453 TGTGTATG
1 TATGTATG
154461 TATGTATG
1 TATGTATG
154469 TATGTATG
1 TATGTATG
*
154477 TGTGTATG
1 TATGTATG
154485 TATGTATG
1 TATGTATG
*
154493 TATGTGTG
1 TATGTATG
154501 TATGTATG
1 TATGTATG
*
154509 TATGTGTG
1 TATGTATG
154517 TATGTATG
1 TATGTATG
*
154525 TGTGTATG
1 TATGTATG
* * *
154533 TGTATGTG
1 TATGTATG
*
154541 TATGTGTG
1 TATGTATG
*
154549 TATGTTTG
1 TATGTATG
* *
154557 TATATGTG
1 TATGTATG
154565 TATG--TG
1 TATGTATG
*
154571 TATGTGTG
1 TATGTATG
154579 TATG--TG
1 TATGTATG
*
154585 TATGTGTG
1 TATGTATG
154593 TATG--TG
1 TATGTATG
*
154599 TATGTGTG
1 TATGTATG
154607 TATGTATG
1 TATGTATG
154615 TA--TATG
1 TATGTATG
154621 TATGTATG
1 TATGTATG
154629 TATGTATG
1 TATGTATG
154637 TATGTATG
1 TATGTATG
154645 TATGTATG
1 TATGTATG
154653 TATGTATG
1 TATGTATG
154661 TATGTATG
1 TATGTATG
154669 TATGTATG
1 TATGTATG
154677 TATGTATG
1 TATGTATG
154685 TATGTATG
1 TATGTATG
154693 TATGTATG
1 TATGTATG
154701 TATGTATG
1 TATGTATG
154709 TATGTATG
1 TATGTATG
154717 TATGTATG
1 TATGTATG
154725 TATGTATG
1 TATGTATG
154733 TATGTATG
1 TATGTATG
154741 TATGTATG
1 TATGTATG
154749 TATGTATG
1 TATGTATG
154757 TATGTATG
1 TATGTATG
154765 TATGTATG
1 TATGTATG
154773 TATGTATG
1 TATGTATG
*
154781 TATGTGTG
1 TATGTATG
154789 TATGTATG
1 TATGTATG
154797 TATGTATG
1 TATGTATG
154805 TATGTATG
1 TATGTATG
154813 TATGTATG
1 TATGTATG
154821 TATGTATG
1 TATGTATG
154829 TATGTATG
1 TATGTATG
*
154837 TATATATG
1 TATGTATG
154845 TATGTATG
1 TATGTATG
154853 TATGTATG
1 TATGTATG
154861 TATGTATG
1 TATGTATG
154869 TATGTATG
1 TATGTATG
* *
154877 TGTCTATG
1 TATGTATG
* *
154885 TGTCTATG
1 TATGTATG
*
154893 TGTGTATG
1 TATGTATG
*
154901 TGTGTATG
1 TATGTATG
*
154909 TGTGTATG
1 TATGTATG
*
154917 TGTGTATG
1 TATGTATG
*
154925 TGTGTATG
1 TATGTATG
* *
154933 TGTGTTTG
1 TATGTATG
*
154941 TGTGTATG
1 TATGTATG
*
154949 TGTGTATG
1 TATGTATG
154957 TATGTATG
1 TATGTATG
*
154965 TATGTGTG
1 TATGTATG
*
154973 TATGTGTG
1 TATGTATG
*
154981 TATGTATA
1 TATGTATG
154989 TATGTATG
1 TATGTATG
*
154997 TTTGTATG
1 TATGTATG
155005 TATGTATG
1 TATGTATG
*
155013 TATGTATA
1 TATGTATG
155021 TATGTATG
1 TATGTATG
*
155029 TATATATG
1 TATGTATG
155037 TATGTATG
1 TATGTATG
155045 --TGTATG
1 TATGTATG
* *
155051 TGTGTGTG
1 TATGTATG
* *
155059 TGTGTGTG
1 TATGTATG
* *
155067 TGTGTGTG
1 TATGTATG
* *
155075 TGTGTGTG
1 TATGTATG
* *
155083 TGTGTGTG
1 TATGTATG
* *
155091 TGTGTGTG
1 TATGTATG
* *
155099 TGTGTGTG
1 TATGTATG
* *
155107 TGTGTGTG
1 TATGTATG
* *
155115 TGTGTGTG
1 TATGTATG
* *
155123 TGTGTGTG
1 TATGTATG
*
155131 TGTGTATG
1 TATGTATG
155139 TATGTATG
1 TATGTATG
*
155147 TATATATG
1 TATGTATG
155155 TATGTATG
1 TATGTATG
155163 TATGTATG
1 TATGTATG
155171 TATGTATG
1 TATGTATG
155179 TATGTATG
1 TATGTATG
155187 TATGTATG
1 TATGTATG
*
155195 TATGTATA
1 TATGTATG
155203 TATGTATG
1 TATGTATG
155211 TATGTATG
1 TATGTATG
*
155219 TATATATG
1 TATGTATG
155227 TATGTATG
1 TATGTATG
155235 TATGTATG
1 TATGTATG
155243 TATGTATG
1 TATGTATG
* *
155251 TATATCTG
1 TATGTATG
155259 TATGTATG
1 TATGTATG
* *
155267 TACGTATA
1 TATGTATG
155275 TATGTATG
1 TATGTATG
155283 TATGTATG
1 TATGTATG
155291 TATGTATG
1 TATGTATG
155299 TATGTATG
1 TATGTATG
155307 TATGTATG
1 TATGTATG
155315 TATG
1 TATG
155319 CTTGCGTGCG
Statistics
Matches: 1527, Mismatches: 114, Indels: 37
0.91 0.07 0.02
Matches are distributed among these distances:
6 47 0.03
7 6 0.00
8 1472 0.96
9 2 0.00
ACGTcount: A:0.22, C:0.02, G:0.28, T:0.48
Consensus pattern (8 bp):
TATGTATG
Found at i:155328 original size:4 final size:4
Alignment explanation
Indices: 155321--155370 Score: 91
Period size: 4 Copynumber: 12.5 Consensus size: 4
155311 TATGTATGCT
*
155321 TGCG TGCG TGCG TGCG TGAG TGCG TGCG TGCG TGCG TGCG TGCG TGCG
1 TGCG TGCG TGCG TGCG TGCG TGCG TGCG TGCG TGCG TGCG TGCG TGCG
155369 TG
1 TG
155371 TATGTGTGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.02, C:0.22, G:0.50, T:0.26
Consensus pattern (4 bp):
TGCG
Found at i:155379 original size:8 final size:8
Alignment explanation
Indices: 155368--155476 Score: 76
Period size: 8 Copynumber: 13.2 Consensus size: 8
155358 GCGTGCGTGC
155368 GTGTATGT
1 GTGTATGT
155376 GTGTATGTAT
1 GTGTATG--T
*
155386 GTATATATGT
1 G--TGTATGT
*
155396 ATGTATGT
1 GTGTATGT
*
155404 GTCTATGT
1 GTGTATGT
*
155412 GTGTATTT
1 GTGTATGT
*
155420 ATGTATGT
1 GTGTATGT
* *
155428 ATGTGTGT
1 GTGTATGT
155436 GTGTATGT
1 GTGTATGT
*
155444 GTGTGT-T
1 GTGTATGT
*
155451 GTGTGTGT
1 GTGTATGT
*
155459 GTGTGTGT
1 GTGTATGT
*
155467 GTGTGTGT
1 GTGTATGT
155475 GT
1 GT
155477 TCTGACATGA
Statistics
Matches: 83, Mismatches: 13, Indels: 10
0.78 0.12 0.09
Matches are distributed among these distances:
7 7 0.08
8 68 0.82
10 3 0.04
12 5 0.06
ACGTcount: A:0.13, C:0.01, G:0.35, T:0.51
Consensus pattern (8 bp):
GTGTATGT
Found at i:155384 original size:4 final size:4
Alignment explanation
Indices: 155369--155443 Score: 78
Period size: 4 Copynumber: 18.8 Consensus size: 4
155359 CGTGCGTGCG
* * * * *
155369 TGTA TGTG TGTA TGTA TGTA TATA TGTA TGTA TGTG TCTA TGTG TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * *
155417 TTTA TGTA TGTA TGTG TGTG TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGT
155444 GTGTGTTGTG
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
4 57 1.00
ACGTcount: A:0.19, C:0.01, G:0.28, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:155384 original size:12 final size:12
Alignment explanation
Indices: 155369--155476 Score: 90
Period size: 12 Copynumber: 8.9 Consensus size: 12
155359 CGTGCGTGCG
155369 TGTATGTGTGTA
1 TGTATGTGTGTA
* *
155381 TGTATGTATATA
1 TGTATGTGTGTA
* *
155393 TGTATGTATGTG
1 TGTATGTGTGTA
*
155405 TCTATGTGTGTA
1 TGTATGTGTGTA
* *
155417 TTTATGTATGTA
1 TGTATGTGTGTA
*
155429 TGTGTGTGTGTA
1 TGTATGTGTGTA
* *
155441 TGTGTGTGTTGTG
1 TGTATGTG-TGTA
* *
155454 TGTGTGTGTGTG
1 TGTATGTGTGTA
*
155466 TGTGTGTGTGT
1 TGTATGTGTGT
155477 TCTGACATGA
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
12 71 0.87
13 11 0.13
ACGTcount: A:0.13, C:0.01, G:0.34, T:0.52
Consensus pattern (12 bp):
TGTATGTGTGTA
Found at i:155434 original size:2 final size:2
Alignment explanation
Indices: 155429--155476 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
155419 TATGTATGTA
*
155429 TG TG TG TG TG TA TG TG TG TG T- TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
155470 TG TG TG T
1 TG TG TG T
155477 TCTGACATGA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.02, C:0.00, G:0.46, T:0.52
Consensus pattern (2 bp):
TG
Found at i:164436 original size:23 final size:22
Alignment explanation
Indices: 164394--164473 Score: 85
Period size: 23 Copynumber: 3.7 Consensus size: 22
164384 ATAGGGCAGA
164394 GGGAATCGATACCCCCTTGAAG
1 GGGAATCGATACCCCCTTGAAG
* *
164416 GGGAATTGATTCCCCCTTTGAAG
1 GGGAATCGATACCCCC-TTGAAG
* * *
164439 GGGAACCAATTCCCCC-T--AG
1 GGGAATCGATACCCCCTTGAAG
164458 GGGAATCGATACCCCC
1 GGGAATCGATACCCCC
164474 CTGGGGTTCT
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
19 15 0.31
21 1 0.02
22 14 0.29
23 19 0.39
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (22 bp):
GGGAATCGATACCCCCTTGAAG
Found at i:167990 original size:24 final size:25
Alignment explanation
Indices: 167963--168010 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
167953 TTTGTTTTCT
* *
167963 TTCTCTTATTCCT-TTTTTATTTTA
1 TTCTCTAATTCATGTTTTTATTTTA
*
167987 TTCTCTAATTTATGTTTTTATTTT
1 TTCTCTAATTCATGTTTTTATTTT
168011 TGGATTAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.15, C:0.12, G:0.02, T:0.71
Consensus pattern (25 bp):
TTCTCTAATTCATGTTTTTATTTTA
Found at i:168089 original size:20 final size:20
Alignment explanation
Indices: 168059--168103 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
168049 TCTAAATTAA
168059 TTATT-TTTCC-TTTATTTTT
1 TTATTCTTTCCTTTTA-TTTT
168078 TTATTCTTTCCTTTTATTTT
1 TTATTCTTTCCTTTTATTTT
168098 TTATTC
1 TTATTC
168104 AATATAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.21
20 15 0.62
21 4 0.17
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (20 bp):
TTATTCTTTCCTTTTATTTT
Found at i:169527 original size:20 final size:20
Alignment explanation
Indices: 169502--169551 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
169492 GACACCAATT
169502 TTATTTTATTTT-TCATAAAA
1 TTATTTTATTTTGT-ATAAAA
169522 TTATTTTATTTTGTATAAAA
1 TTATTTTATTTTGTATAAAA
169542 TTATTTTATT
1 TTATTTTATT
169552 AATTATAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (20 bp):
TTATTTTATTTTGTATAAAA
Found at i:172987 original size:151 final size:151
Alignment explanation
Indices: 172713--173004 Score: 512
Period size: 151 Copynumber: 1.9 Consensus size: 151
172703 TGACGCTTGT
* * **
172713 CAATGATGCATTTATTATCAAAAGAAGATCATGAAGGAAAGCTCACAAGGTAACAAATATTTACC
1 CAATGATGCATTTATTATAAAAAGAAGATCATGAAGGAAAGCTCAAAAGGTAACAAATACGTACC
*
172778 ACTATCATGTGGAGTTATTTTATATTGTTACATATATGCAACTTCAAGAGCTTAACAATTGTTTT
66 ACTATCATGTGGAGTTATTTTATATTGTTACATATATGCAACTTCAAGAGATTAACAATTGTTTT
**
172843 AGTGAAGCAAACATAGATATG
131 AGAAAAGCAAACATAGATATG
*
172864 CAATGATGCATTTATTATAAAAAGAAGATCATGAAGTAAAGCTCAAAAGGTAACAAATACGTACC
1 CAATGATGCATTTATTATAAAAAGAAGATCATGAAGGAAAGCTCAAAAGGTAACAAATACGTACC
172929 ACTATCATGTGGAGTTATTTTATATTGTTACATATATGCAACTTCAAGAGATTAACAATTGTTTT
66 ACTATCATGTGGAGTTATTTTATATTGTTACATATATGCAACTTCAAGAGATTAACAATTGTTTT
172994 AGAAAAGCAAA
131 AGAAAAGCAAA
173005 TACAAAGTTG
Statistics
Matches: 133, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
151 133 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (151 bp):
CAATGATGCATTTATTATAAAAAGAAGATCATGAAGGAAAGCTCAAAAGGTAACAAATACGTACC
ACTATCATGTGGAGTTATTTTATATTGTTACATATATGCAACTTCAAGAGATTAACAATTGTTTT
AGAAAAGCAAACATAGATATG
Found at i:184077 original size:28 final size:28
Alignment explanation
Indices: 184045--184107 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
184035 TTTCTTTTCT
* *
184045 TTTCTTTGCTTT-TTTTTAAGTGCTGGAA
1 TTTCTTT-CTTTCTTTTGAAGTGCTGCAA
* *
184073 TTTCTTTCTTTCTTTTGGAGTGCTTCAA
1 TTTCTTTCTTTCTTTTGAAGTGCTGCAA
184101 TTTCTTT
1 TTTCTTT
184108 TTTTTCTGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 4 0.13
28 26 0.87
ACGTcount: A:0.11, C:0.14, G:0.14, T:0.60
Consensus pattern (28 bp):
TTTCTTTCTTTCTTTTGAAGTGCTGCAA
Found at i:189538 original size:22 final size:22
Alignment explanation
Indices: 189510--189564 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
189500 ATTTAATTTG
189510 GCCCACATCATATACGGGATCT
1 GCCCACATCATATACGGGATCT
189532 GCCCACATCATATACGGGATCT
1 GCCCACATCATATACGGGATCT
189554 GCCCACATCAT
1 GCCCACATCAT
189565 TCACGTAATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.27, C:0.35, G:0.16, T:0.22
Consensus pattern (22 bp):
GCCCACATCATATACGGGATCT
Found at i:190391 original size:20 final size:21
Alignment explanation
Indices: 190366--190417 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
190356 TTTTCCCAAT
*
190366 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
190386 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
190407 TCGCAATGCGA
1 TCGCAATGCGA
190418 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:190431 original size:20 final size:20
Alignment explanation
Indices: 190406--190519 Score: 104
Period size: 20 Copynumber: 5.7 Consensus size: 20
190396 AATTGGGAAA
*
190406 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
190426 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTGACT
** * *
190446 ATCGCAATACGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
190467 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
190487 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
190507 TTCGCAACGCGAT
1 ATCGCAACGCGAT
190520 TTACATAGCG
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
19 2 0.03
20 63 0.80
21 12 0.15
22 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:190450 original size:61 final size:61
Alignment explanation
Indices: 190403--190519 Score: 153
Period size: 61 Copynumber: 1.9 Consensus size: 61
190393 GCGAATTGGG
* * * * **
190403 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATACGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * *
190464 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGAT
190520 TTACATAGCG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:191125 original size:19 final size:19
Alignment explanation
Indices: 191078--191119 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
191068 ACGAGATAAT
*
191078 CGCAACGCGAAATAAAAAA
1 CGCAACGCGAAACAAAAAA
*
191097 CGCAACGCGAAACAAAAAT
1 CGCAACGCGAAACAAAAAA
191116 CGCA
1 CGCA
191120 TTGCGATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.52, C:0.26, G:0.17, T:0.05
Consensus pattern (19 bp):
CGCAACGCGAAACAAAAAA
Found at i:191137 original size:19 final size:19
Alignment explanation
Indices: 191115--191318 Score: 185
Period size: 19 Copynumber: 11.1 Consensus size: 19
191105 GAAACAAAAA
* *
191115 TCGCATTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
191134 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
191153 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
191172 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
191191 TCGCGATTGCGATTTTCATT
1 TCGCG-TTGCGATTTTCATT
* * *
191211 TCGTGTTGCGA-TTGC--C
1 TCGCGTTGCGATTTTCATT
* **
191227 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
191244 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
191258 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
191277 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
191297 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
191317 TC
1 TC
191319 AACCAAAAGA
Statistics
Matches: 151, Mismatches: 21, Indels: 26
0.76 0.11 0.13
Matches are distributed among these distances:
14 16 0.11
15 2 0.01
16 3 0.02
17 3 0.02
18 4 0.03
19 74 0.49
20 48 0.32
21 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:191243 original size:33 final size:33
Alignment explanation
Indices: 191206--191293 Score: 124
Period size: 33 Copynumber: 2.6 Consensus size: 33
191196 ATTGCGATTT
* *
191206 TCATTTCGTGTTGCGATTGC-CTGGTCGCGATAG
1 TCATTTCGCGTTGCGATT-CTCTCGTCGCGATAG
*
191239 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
191272 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
191294 ATTATCTCGT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
32 1 0.02
33 34 0.68
34 15 0.30
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.39
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:191295 original size:20 final size:20
Alignment explanation
Indices: 191261--191318 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
191251 GCGATTCTCT
**
191261 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
191281 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
191301 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
191319 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:194815 original size:14 final size:14
Alignment explanation
Indices: 194796--194831 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
194786 ATTGTTTAAT
194796 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
194810 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
194824 TGATTTGT
1 TGATTTGT
194832 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:195039 original size:19 final size:19
Alignment explanation
Indices: 195011--195141 Score: 94
Period size: 19 Copynumber: 7.7 Consensus size: 19
195001 GAAACTCGAA
*
195011 TTCGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
*
195030 TTCGCATTGCGA--TTC-C
1 TTCGCATTGCGATTTTCAT
*
195046 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
*
195063 TTCGCATTGCGA-----AA
1 TTCGCATTGCGATTTTCAT
* *
195077 TTAGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
195096 TTCGCATTGCGA--TTC-T
1 TTCGCATTGCGATTTTCAT
*
195112 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
195129 TTCGCATTGCGAT
1 TTCGCATTGCGAT
195142 AGTAATTTCT
Statistics
Matches: 84, Mismatches: 13, Indels: 30
0.66 0.10 0.24
Matches are distributed among these distances:
14 23 0.27
16 13 0.15
17 13 0.15
19 35 0.42
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (19 bp):
TTCGCATTGCGATTTTCAT
Found at i:195057 original size:33 final size:32
Alignment explanation
Indices: 195015--195141 Score: 193
Period size: 33 Copynumber: 3.9 Consensus size: 32
195005 CTCGAATTCG
195015 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
**
195048 CGTTGCGATTTTCATTTCGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
195081 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
195114 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
195142 AGTAATTTCT
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
31 3 0.03
33 80 0.93
35 3 0.03
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:195120 original size:66 final size:66
Alignment explanation
Indices: 195009--195140 Score: 246
Period size: 66 Copynumber: 2.0 Consensus size: 66
194999 GCGAAACTCG
*
195009 AATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCG
1 AATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCG
195074 A
66 A
*
195075 AATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCG
1 AATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCG
195140 A
66 A
195141 TAGTAATTTC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.42
Consensus pattern (66 bp):
AATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCG
A
Found at i:197441 original size:12 final size:12
Alignment explanation
Indices: 197424--197448 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
197414 TCTTCGGGGA
197424 CTTTTTCTTCTT
1 CTTTTTCTTCTT
197436 CTTTTTCTTCTT
1 CTTTTTCTTCTT
197448 C
1 C
197449 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:198770 original size:19 final size:20
Alignment explanation
Indices: 198730--198789 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
198720 GACATTCATT
198730 TGACTATCGCAACGCGAAAA
1 TGACTATCGCAACGCGAAAA
198750 TGACTATCGCAACGC-AAAA
1 TGACTATCGCAACGCGAAAA
* *
198769 TGGCTATCGCAACGAGAAAA
1 TGACTATCGCAACGCGAAAA
198789 T
1 T
198790 CGCAATGCGA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 17 0.46
20 20 0.54
ACGTcount: A:0.40, C:0.23, G:0.20, T:0.17
Consensus pattern (20 bp):
TGACTATCGCAACGCGAAAA
Found at i:198854 original size:19 final size:19
Alignment explanation
Indices: 198808--198894 Score: 121
Period size: 19 Copynumber: 4.8 Consensus size: 19
198798 GAAATGAAAA
198808 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
*
198824 TCG--TTGCGATTTTCAAT
1 TCGCATTGCGATTTTCATT
*
198841 TCGCATTGCAATTTTCATT
1 TCGCATTGCGATTTTCATT
198860 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
198879 TCGCATTGCGATTTTC
1 TCGCATTGCGATTTTC
198895 TCGTTGCGAT
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
14 11 0.17
16 3 0.05
17 3 0.05
19 46 0.73
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:198912 original size:33 final size:33
Alignment explanation
Indices: 198808--198923 Score: 133
Period size: 33 Copynumber: 3.4 Consensus size: 33
198798 GAAATGAAAA
*
198808 TCGCATTGCGATTTTCTCGTTGCGATTTTCAAT
1 TCGCATTGCGATTTTCTCGTTGCGATTTTCATT
*
198841 TCGCATTGCAATTTTCATTTCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTC---TCG--TTGCGATTTTCATT
***
198879 TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
1 TCGCATTGCGATTTTCTCGTTGCGATTTTCATT
*
198912 TCGCGTTGCGAT
1 TCGCATTGCGAT
198924 AGTCTGTTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
33 37 0.52
35 3 0.04
36 3 0.04
38 28 0.39
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.43
Consensus pattern (33 bp):
TCGCATTGCGATTTTCTCGTTGCGATTTTCATT
Found at i:199030 original size:14 final size:14
Alignment explanation
Indices: 199011--199047 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
199001 CATCAATTAA
199011 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
199025 ACAAATCATCTTTT
1 ACAAATCAACATTT
199039 ACAAATCAA
1 ACAAATCAA
199048 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:200949 original size:20 final size:19
Alignment explanation
Indices: 200914--200980 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
200904 GAAACTTAAA
200914 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
200933 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* **
200953 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
200972 ATCGCAACG
1 ATCGCAACG
200981 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 24 0.59
20 17 0.41
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:201028 original size:19 final size:19
Alignment explanation
Indices: 201006--201101 Score: 79
Period size: 19 Copynumber: 5.6 Consensus size: 19
200996 GAAACACAAA
201006 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* *
201025 TCGCGTTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
*
201041 TCG--TTGC-AATTTCATT
1 TCGCATTGCGATTTTCATT
*
201057 TCGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
201073 T--CATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
201090 TCGCATTGCGAT
1 TCGCATTGCGAT
201102 AGCCATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 22
0.69 0.06 0.25
Matches are distributed among these distances:
13 1 0.02
14 15 0.25
15 3 0.05
16 10 0.16
17 2 0.03
18 10 0.16
19 20 0.33
ACGTcount: A:0.15, C:0.20, G:0.20, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:201047 original size:14 final size:14
Alignment explanation
Indices: 201028--201085 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 14
201018 TTTCATTTCG
201028 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
* *
201042 CGTTGCAATTTCATTT
1 CGTTGCGATTT--TGT
201058 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
*
201074 CATTGCGATTTT
1 CGTTGCGATTTT
201086 CATTTCGCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
14 20 0.57
16 7 0.20
18 8 0.23
ACGTcount: A:0.14, C:0.17, G:0.21, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:201092 original size:33 final size:33
Alignment explanation
Indices: 201009--201101 Score: 152
Period size: 32 Copynumber: 2.8 Consensus size: 33
200999 ACACAAATCG
*
201009 CATTGCGATTTTCATTTCGCGTTGCGATTTTGT
1 CATTGCGATTTTCATTTCGCATTGCGATTTTGT
* *
201042 CGTTGC-AATTTCATTTCGCATTGCGATTTTGT
1 CATTGCGATTTTCATTTCGCATTGCGATTTTGT
201074 CATTGCGATTTTCATTTCGCATTGCGAT
1 CATTGCGATTTTCATTTCGCATTGCGAT
201102 AGCCATTTCC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
32 29 0.54
33 25 0.46
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.46
Consensus pattern (33 bp):
CATTGCGATTTTCATTTCGCATTGCGATTTTGT
Found at i:201120 original size:20 final size:19
Alignment explanation
Indices: 201086--201140 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
201076 TTGCGATTTT
*
201086 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
201105 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
201125 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
201141 AAGTAAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:201648 original size:18 final size:18
Alignment explanation
Indices: 201622--201661 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
201612 GTCGATCAGA
* *
201622 TGATGGCTCTGGGTGAGG
1 TGATAGCTCTGGGCGAGG
201640 TGATAGCTCTGGGCGAGG
1 TGATAGCTCTGGGCGAGG
201658 TGAT
1 TGAT
201662 GACTCCCGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.15, C:0.12, G:0.45, T:0.28
Consensus pattern (18 bp):
TGATAGCTCTGGGCGAGG
Found at i:203003 original size:20 final size:20
Alignment explanation
Indices: 202978--203020 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
202968 AATAGTTTCT
*
202978 GAAAATGAAAATCGCAACAC
1 GAAAATAAAAATCGCAACAC
*
202998 GAAAATAAAAATCGCAACGC
1 GAAAATAAAAATCGCAACAC
203018 GAA
1 GAA
203021 TTTGACTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.19, G:0.16, T:0.09
Consensus pattern (20 bp):
GAAAATAAAAATCGCAACAC
Found at i:203616 original size:20 final size:20
Alignment explanation
Indices: 203510--203624 Score: 79
Period size: 20 Copynumber: 5.7 Consensus size: 20
203500 CGCTTTGAAA
*
203510 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* * *
203531 ATCGCGTTGCAAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
203551 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
203571 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
203592 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
203612 ATCGCATTGCGAT
1 ATCGCATTGCGAT
203625 TTTCCCAATT
Statistics
Matches: 74, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
19 2 0.03
20 49 0.66
21 23 0.31
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:203642 original size:21 final size:21
Alignment explanation
Indices: 203613--203705 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
203603 ATAGTCAGTA
203613 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
203634 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
203654 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
203675 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
203695 TCGCATTGCGA
1 TCGCATTGCGA
203706 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:203643 original size:41 final size:41
Alignment explanation
Indices: 203552--203686 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
203542 AAAGTCAGTA
* * * ** *
203552 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
203592 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
203634 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
203675 TCGCGTTGCGAT
1 TCGCGTTGCGAT
203687 TTACTTATTC
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 3 0.04
41 74 0.94
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:203687 original size:41 final size:41
Alignment explanation
Indices: 203613--203705 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
203603 ATAGTCAGTA
203613 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
203654 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
203695 TCGCATTGCGA
1 TCGCATTGCGA
203706 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:218153 original size:20 final size:21
Alignment explanation
Indices: 218106--218156 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
218096 AGAATGAACA
*
218106 ATATCGATACTAATGAAAGTTG
1 ATATCGATACTAATG-AAGTAG
*
218128 -TATCGATACTAATG-TGTAG
1 ATATCGATACTAATGAAGTAG
218147 ATATCGATAC
1 ATATCGATAC
218157 CAAGAGGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 3 0.12
20 9 0.35
21 14 0.54
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (21 bp):
ATATCGATACTAATGAAGTAG
Found at i:218979 original size:53 final size:53
Alignment explanation
Indices: 218875--218979 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
218865 GTGTACTTTC
* * *
218875 GGCACTATGTGTGCACCCATGGTATTCATAATGAGTTTGTGAATTGCCATTTT
1 GGCACTATGTGTGCACACATGGAATTCATAATGAGTTTGTGAATTACCATTTT
* * * *
218928 GGCATTATGTGTGCATACATGGAATTCATAATGAGTTTGTTAATTATCATTT
1 GGCACTATGTGTGCACACATGGAATTCATAATGAGTTTGTGAATTACCATTT
218980 CGGTACTTAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (53 bp):
GGCACTATGTGTGCACACATGGAATTCATAATGAGTTTGTGAATTACCATTTT
Found at i:221292 original size:95 final size:94
Alignment explanation
Indices: 221135--221308 Score: 269
Period size: 95 Copynumber: 1.8 Consensus size: 94
221125 AACATGGAAC
* * *
221135 CTAATTTTGGTATCAATACCAAAAGGAGTATCGGTACCATAGTATAGTAGTATCGATACCATGGT
1 CTAATTTTGGTATCAATACCAAAAGGAGTATCGATACCATAGCAGAGTAGTATCGATACCATGGT
221200 AAGGGTATCGATACCAGACCGTATCAAAT
66 AAGGGTATCGATACCAGACCGTATCAAAT
* *
221229 CTAATTTTGGTATCGATACCGAAAGAGG-GTATCGATACCATAGCAGGGTAGTATCGATACCATG
1 CTAATTTTGGTATCAATACC-AAA-AGGAGTATCGATACCATAGCAGAGTAGTATCGATACCATG
*
221293 GTAGGGGTATCGATAC
64 GTAAGGGTATCGATAC
221309 TGAAGAACCA
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
94 19 0.26
95 50 0.69
96 3 0.04
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (94 bp):
CTAATTTTGGTATCAATACCAAAAGGAGTATCGATACCATAGCAGAGTAGTATCGATACCATGGT
AAGGGTATCGATACCAGACCGTATCAAAT
Found at i:221304 original size:20 final size:20
Alignment explanation
Indices: 221237--221308 Score: 76
Period size: 22 Copynumber: 3.5 Consensus size: 20
221227 ATCTAATTTT
*
221237 GGTATCGATACCGAAAG-A-G
1 GGTATCGATACC-ATAGCAGG
221256 GGTATCGATACCATAGCAGG
1 GGTATCGATACCATAGCAGG
* *
221276 GTAGTATCGATACCATGGTAGG
1 G--GTATCGATACCATAGCAGG
221298 GGTATCGATAC
1 GGTATCGATAC
221309 TGAAGAACCA
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
18 3 0.07
19 13 0.28
20 12 0.26
22 18 0.39
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.22
Consensus pattern (20 bp):
GGTATCGATACCATAGCAGG
Found at i:221771 original size:59 final size:58
Alignment explanation
Indices: 221642--222159 Score: 713
Period size: 59 Copynumber: 8.8 Consensus size: 58
221632 GCCATAAGTA
*
221642 TGCTAAAATGATAAGAAATTCATACTAA--GTATGAATTTCCGTATAGGCACTTCGTG
1 TGCTAAAATGGTAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGCACTTCGTG
* * *
221698 TGGTGAAATCGTAAGAAATTCATACTAAGTGTATGAATTTCCGTATAAGGCACTTCGTG
1 TGCTAAAATGGTAAGAAATTCATACTAAGTGTATGAATTTCCGTAT-AGGCACTTCGTG
* *
221757 TGCTAAAATGGTAAGAAATTCATACTAAGTAGTGTATGAATTTCCGTATAGGAACTTAGTG
1 TGCTAAAATGGTAAGAAATTCATACT-A--AGTGTATGAATTTCCGTATAGGCACTTCGTG
* * * * *
221818 TTCTAAAATGTTAAGAAATTCATATTAAGTGTATGAGTTTCAGTATAGGGCACTTCGTG
1 TGCTAAAATGGTAAGAAATTCATACTAAGTGTATGAATTTCCGTATA-GGCACTTCGTG
* *
221877 TGCTAAAATGTTAAGAAATTCATAATAAGTGTATGAATTTCCGTATAGGGCACTTCGTG
1 TGCTAAAATGGTAAGAAATTCATACTAAGTGTATGAATTTCCGTATA-GGCACTTCGTG
221936 TGCTAAAATGGTAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGAGCACTTCGTG
1 TGCTAAAATGGTAAGAAATTCATACTAAGTGTATGAATTTCCGTATAG-GCACTTCGTG
221995 TGCTAAAATGGTAAGAAATTCATACTAAGTGTATGAATTT-CGTATAGAGCACTTCGTG
1 TGCTAAAATGGTAAGAAATTCATACTAAGTGTATGAATTTCCGTATAG-GCACTTCGTG
* * * * *
222053 TGCTAAAATGTTAAAGAAATTCATTCTAAGTGTATGACTTTTCGTATTGGGCACCTT-GTG
1 TGCTAAAATGGT-AAGAAATTCATACTAAGTGTATGAATTTCCGTA-TAGGCA-CTTCGTG
* *
222113 TGCTAAAATGATATA-AAATTCATACTAAGTGTATGAATTTTCGTATA
1 TGCTAAAATGGTA-AGAAATTCATACTAAGTGTATGAATTTCCGTATA
222160 AGAAATATAG
Statistics
Matches: 419, Mismatches: 30, Indels: 24
0.89 0.06 0.05
Matches are distributed among these distances:
56 24 0.06
58 65 0.16
59 249 0.59
60 24 0.06
61 38 0.09
62 19 0.05
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (58 bp):
TGCTAAAATGGTAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGCACTTCGTG
Found at i:223806 original size:55 final size:55
Alignment explanation
Indices: 223636--224995 Score: 1490
Period size: 55 Copynumber: 24.6 Consensus size: 55
223626 CAATAAAAAA
* * * *
223636 AGGGAGCGAACCCGTTGGCAAATCAAGATTGTTCGAGTTCTACACTCCGTGAAGCAAG
1 AGGGAGCGAACCCATTGGC--A-GAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* * *
223694 AGGGAGAGAACCCGTTGGCAGAAGATGGTT-GAGTT-TCATACTCCCTGAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCT-ATACTCCCTGAAGCAAG
** **
223748 AGGGAATGAACCTGTTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* * * * *
223803 AGGGAGCGAACTCATTGACAAAAGATTGTTCGAAGTTCCATACTCCCTGAAGGAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCG-AGTTCTATACTCCCTGAAGCAAG
*
223859 AGGGAGCGAACCCATTGACAGAAGATTGTTCGAGTT-TCATACTCCCTGAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCT-ATACTCCCTGAAGCAAG
* * *
223914 AAGGAACGAACCCATTGGCAGAAGA-TGTTCGAGTT-TCATACTCCCTTAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCT-ATACTCCCTGAAGCAAG
* * * *
223968 AGGGAACAAACCCATTGGCAGAAGAATGTTTGAGTTCTATACTCCCTGAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* * * *
224023 AGGGAGTGAACTCATTGACAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* * *
224078 AGGGAGC-AACCCCGTTGGCAAATCAAGATTGTTCGAGTTCTATACTCTCTGAAGCAAG
1 AGGGAGCGAA-CCCATTGGC--A-GAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* *
224136 AGGGAGCGAACCCATTGGCAGAAGA-TGTTCGGGTT-TCATACTCCCTGAAGTAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCT-ATACTCCCTGAAGCAAG
** * * *
224190 AGGGAATGAACCTATTGGCAGAAGATTGTTCAAGTTCTATACTCCCTGTAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
*** * * * *
224245 AGGGAGCGAACTTGTTGACAGAAGATTGTTCGAGTTCCATATTCTCTGAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* * * *
224300 AGGGAGTGAACCCATTGGCAAATCAAGATTGTTCGAGTTCCATACTCCCTGAAGTAAG
1 AGGGAGCGAACCCATTGGC--A-GAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* * * *
224358 AGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTCCATACTCCGTAAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* * * * *
224413 AGGGAGCAAACTCGTTGACAGAAGATTATTCGAGTTCTATACTCCCTGAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* * * * * *
224468 AGGGAGTGAACTCGTTGACAGAAGATTGTTCGAGTTCCATACTCCCTGAAGTAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* * * * *
224523 AGGGAGTGAACCCGTTGGCAAATCAAGATTGTTCAAGTTAC-ATACTCTCTGAAGCAAG
1 AGGGAGCGAACCCATTGGC--A-GAAGATTGTTCGAGTT-CTATACTCCCTGAAGCAAG
* * * * * **
224581 AGGGAGCAAACTCGTTGGCAGAAGATTGTTTGAGTTCCATACTCTTTGAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* *
224636 AGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTCTATACTGCCGCCTTAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACT--C-CCTGAAGCAAG
* ** * *
224694 AGGGAGCAAACCTGTTGACAGAAGATTTGTTCGAGTTCCATACTCCCTGAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGA-TTGTTCGAGTTCTATACTCCCTGAAGCAAG
* * *
224750 AGAGAGCGAACCCATTGGCAGAATATTGTTCGAGTTCTATACTCCATGAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* * * * * * *
224805 AGGGAACGAACCCATTGGTAAAAGATTGTTAGAGTTCTACACTCCCTGATGTAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* * *
224860 AGGGAACGAACCCATAGGCAGAAGATTGTTCGAGTTC--TACTCCTTGAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* *
224913 AGGGAGTGAACCCATAGGCAGAAGATTGTTCGAGTTC--TACTCCCTGAAGCAAG
1 AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
* **
224966 ATGGAG-GAACCCGCTGGTC-GAAGATTGTTC
1 AGGGAGCGAACCCATTGG-CAGAAGATTGTTC
224996 AAAGAAGAGT
Statistics
Matches: 1122, Mismatches: 152, Indels: 62
0.84 0.11 0.05
Matches are distributed among these distances:
52 19 0.02
53 70 0.06
54 146 0.13
55 587 0.52
56 87 0.08
57 5 0.00
58 188 0.17
59 20 0.02
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (55 bp):
AGGGAGCGAACCCATTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
Found at i:224384 original size:168 final size:166
Alignment explanation
Indices: 223636--224977 Score: 1535
Period size: 168 Copynumber: 8.1 Consensus size: 166
223626 CAATAAAAAA
* * * * * * *
223636 AGGGAGCGAACCCGTTGGCAAATCAAGATTGTTCGAGTTCTACACTCCGTGAAGCAAGAGGGAGA
1 AGGGAGCGAACCCATTGGC-AA-GAAGATTGTTCGAGTTCCATACTCCCTGAAGTAAGAGGGAGC
* * * ** *
223701 GAACCCGTTGGCAGAAGATGGTT-GAGTTTCATACTCCCTGAAGCAAGAGGGAATGAACCTGTTG
64 GAACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGTTG
*
223765 GCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAG
129 GCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAG
* * *
223803 AGGGAGCGAACTCATTGACAA-AAGATTGTTCGAAGTTCCATACTCCCTGAAGGAAGAGGGAGCG
1 AGGGAGCGAACCCATTGGCAAGAAGATTGTTCG-AGTTCCATACTCCCTGAAGTAAGAGGGAGCG
* * * * *
223867 AACCCATTGACAGAAGATTGTTCGAGTTTCATACTCCCTGAAGCAAGAAGGAACGAACCCATTGG
65 AACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGTTGG
* *
223932 CAGAAGA-TGTTCGAGTTTCATACTCCCTTAAGCAAG
130 CAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAG
* * * * * * *
223968 AGGGAACAAACCCATTGGC-AGAAGAATGTTTGAGTTCTATACTCCCTGAAGCAAGAGGGAGTGA
1 AGGGAGCGAACCCATTGGCAAGAAGATTGTTCGAGTTCCATACTCCCTGAAGTAAGAGGGAGCGA
* *
224032 ACTCATTGACAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGC-AACCCCGTTGG
66 ACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAA-CCCGTTGG
* * *
224096 CAAATCAAGATTGTTCGAGTTCTATACTCTCTGAAGCAAG
130 C--A-GAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAG
* * **
224136 AGGGAGCGAACCCATTGGC-AGAAGA-TGTTCGGGTTTCATACTCCCTGAAGTAAGAGGGAATGA
1 AGGGAGCGAACCCATTGGCAAGAAGATTGTTCGAGTTCCATACTCCCTGAAGTAAGAGGGAGCGA
* * * * ** *
224199 ACCTATTGGCAGAAGATTGTTCAAGTTCTATACTCCCTGTAGCAAGAGGGAGCGAACTTGTTGAC
66 ACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGTTGGC
* *
224264 AGAAGATTGTTCGAGTTCCATATTCTCTGAAGCAAG
131 AGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAG
* *
224300 AGGGAGTGAACCCATTGGCAAATCAAGATTGTTCGAGTTCCATACTCCCTGAAGTAAGAGGGAGC
1 AGGGAGCGAACCCATTGGC-AA-GAAGATTGTTCGAGTTCCATACTCCCTGAAGTAAGAGGGAGC
* * * * *
224365 GAACCCGTTGGCAGAAGATTGTTCGAGTTCCATACTCCGTAAAGCAAGAGGGAGCAAACTCGTTG
64 GAACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGTTG
* * *
224430 ACAGAAGATTATTCGAGTTCTATACTCCCTGAAGCAAG
129 GCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAG
* * * * *
224468 AGGGAGTGAACTCGTTGAC-AGAAGATTGTTCGAGTTCCATACTCCCTGAAGTAAGAGGGAGTGA
1 AGGGAGCGAACCCATTGGCAAGAAGATTGTTCGAGTTCCATACTCCCTGAAGTAAGAGGGAGCGA
* * * * * * *
224532 ACCCGTTGGCAAATCAAGATTGTTCAAGTTACATACTCTCTGAAGCAAGAGGGAGCAAACTCGTT
66 ACCCATTGGC--A-GAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGTT
* **
224597 GGCAGAAGATTGTTTGAGTTCCATACTCTTTGAAGCAAG
128 GGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAG
* * * *
224636 AGGGAGCGAACCCGTTGGC-AGAAGATTGTTCGAGTTCTATACTGCCGCCTTAAGCAAGAGGGAG
1 AGGGAGCGAACCCATTGGCAAGAAGATTGTTCGAGTTCCATACT--C-CCTGAAGTAAGAGGGAG
* ** * * *
224700 CAAACCTGTTGACAGAAGATTTGTTCGAGTTCCATACTCCCTGAAGCAAGAGAGAGCGAACCCAT
63 CGAACCCATTGGCAGAAGA-TTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGT
* * *
224765 TGGCAGAATATTGTTCGAGTTCTATACTCCATGAAGCAAG
127 TGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAG
* * * * * * *
224805 AGGGAACGAACCCATTGGTAA-AAGATTGTTAGAGTTCTACACTCCCTGATGTAAGAGGGAACGA
1 AGGGAGCGAACCCATTGGCAAGAAGATTGTTCGAGTTCCATACTCCCTGAAGTAAGAGGGAGCGA
* * * * *
224869 ACCCATAGGCAGAAGATTGTTCGAGTT-C-TACTCCTTGAAGCAAGAGGGAGTGAACCCATAGGC
66 ACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGTTGGC
224932 AGAAGATTGTTCGAGTT-C-TACTCCCTGAAGCAAG
131 AGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAG
*
224966 ATGGAG-GAACCC
1 AGGGAGCGAACCC
224978 GCTGGTCGAA
Statistics
Matches: 1015, Mismatches: 139, Indels: 49
0.84 0.12 0.04
Matches are distributed among these distances:
160 6 0.01
161 19 0.02
163 49 0.05
164 149 0.15
165 159 0.16
166 77 0.08
167 111 0.11
168 309 0.30
169 110 0.11
170 2 0.00
171 24 0.02
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (166 bp):
AGGGAGCGAACCCATTGGCAAGAAGATTGTTCGAGTTCCATACTCCCTGAAGTAAGAGGGAGCGA
ACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGTTGGC
AGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAG
Found at i:224507 original size:223 final size:223
Alignment explanation
Indices: 223636--224977 Score: 1683
Period size: 223 Copynumber: 6.1 Consensus size: 223
223626 CAATAAAAAA
* * * * *
223636 AGGGAGCGAACCCGTTGGCAAATCAAGATTGTTCGAGTTCTACACTCCGTGAAGCAAGAGGGAGA
1 AGGGAGCGAACCCATTGGCAAATCAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGC
* * * *** **
223701 GAACCCGTTGGCAGAAGATGGTT-GAGTTTCATACTCCCTGAAGCAAGAGGGAATGAACCTGTTG
66 GAACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCAAACCCATTG
*
223765 GCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAGAGGGAGCGAACTCATTGACAAAAGATT
131 GCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAGAGGGAGCGAACTCATTGACAGAAGATT
*
223830 GTTCGAAGTTCCATACTCCCTGAAGGAAG
196 GTTCG-AGTTCCATACTCCCTGAAGCAAG
* * * * *
223859 AGGGAGCGAACCCATT-G-ACA-GAAGATTGTTCGAGTTTCATACTCCCTGAAGCAAGAAGGAAC
1 AGGGAGCGAACCCATTGGCAAATCAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGC
* * *
223921 GAACCCATTGGCAGAAGA-TGTTCGAGTTTCATACTCCCTTAAGCAAGAGGGAACAAACCCATTG
66 GAACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCAAACCCATTG
* * *
223985 GCAGAAGAATGTTTGAGTTCTATACTCCCTGAAGCAAGAGGGAGTGAACTCATTGACAGAAGATT
131 GCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAGAGGGAGCGAACTCATTGACAGAAGATT
224050 GTTCGAGTTCCATACTCCCTGAAGCAAG
196 GTTCGAGTTCCATACTCCCTGAAGCAAG
* * *
224078 AGGGAGC-AACCCCGTTGGCAAATCAAGATTGTTCGAGTTCTATACTCTCTGAAGCAAGAGGGAG
1 AGGGAGCGAA-CCCATTGGCAAATCAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAG
* * * *** *
224142 CGAACCCATTGGCAGAAGA-TGTTCGGGTTTCATACTCCCTGAAGTAAGAGGGAATGAACCTATT
65 CGAACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCAAACCCATT
* * **
224206 GGCAGAAGATTGTTCAAGTTCTATACTCCCTGTAGCAAGAGGGAGCGAACTTGTTGACAGAAGAT
130 GGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAGAGGGAGCGAACTCATTGACAGAAGAT
* *
224271 TGTTCGAGTTCCATATTCTCTGAAGCAAG
195 TGTTCGAGTTCCATACTCCCTGAAGCAAG
* *
224300 AGGGAGTGAACCCATTGGCAAATCAAGATTGTTCGAGTTCCATACTCCCTGAAGTAAGAGGGAGC
1 AGGGAGCGAACCCATTGGCAAATCAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGC
* * * * *
224365 GAACCCGTTGGCAGAAGATTGTTCGAGTTCCATACTCCGTAAAGCAAGAGGGAGCAAACTCGTTG
66 GAACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCAAACCCATTG
* * * *
224430 ACAGAAGATTATTCGAGTTCTATACTCCCTGAAGCAAGAGGGAGTGAACTCGTTGACAGAAGATT
131 GCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAGAGGGAGCGAACTCATTGACAGAAGATT
*
224495 GTTCGAGTTCCATACTCCCTGAAGTAAG
196 GTTCGAGTTCCATACTCCCTGAAGCAAG
* * * * *
224523 AGGGAGTGAACCCGTTGGCAAATCAAGATTGTTCAAGTTACATACTCTCTGAAGCAAGAGGGAGC
1 AGGGAGCGAACCCATTGGCAAATCAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGC
* * * * ** * *
224588 AAACTCGTTGGCAGAAGATTGTTTGAGTTCCATACTCTTTGAAGCAAGAGGGAGCGAACCCGTTG
66 GAACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCAAACCCATTG
* * *
224653 GCAGAAGATTGTTCGAGTTCTATACTGCCGCCTTAAGCAAGAGGGAGCAAAC-CTGTTGACAGAA
131 GCAGAAGATTGTTCGAGTTCTATACT--C-CCTGAAGCAAGAGGGAGCGAACTC-ATTGACAGAA
224717 GATTTGTTCGAGTTCCATACTCCCTGAAGCAAG
192 GA-TTGTTCGAGTTCCATACTCCCTGAAGCAAG
* * * *
224750 AGAGAGCGAACCCATTGGCAGAAT----ATTGTTCGAGTTCTATACTCCATGAAGCAAGAGGGAA
1 AGGGAGCGAACCCATTGGCA-AATCAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAG
* * * * * * * * * *
224811 CGAACCCATTGGTAAAAGATTGTTAGAGTTCTACACTCCCTGATGTAAGAGGGAACGAACCCATA
65 CGAACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCAAACCCATT
* * * * *
224876 GGCAGAAGATTGTTCGAGTTC--TACTCCTTGAAGCAAGAGGGAGTGAACCCATAGGCAGAAGAT
130 GGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAGAGGGAGCGAACTCATTGACAGAAGAT
224939 TGTTCGAGTT-C-TACTCCCTGAAGCAAG
195 TGTTCGAGTTCCATACTCCCTGAAGCAAG
*
224966 ATGGAG-GAACCC
1 AGGGAGCGAACCC
224978 GCTGGTCGAA
Statistics
Matches: 982, Mismatches: 123, Indels: 36
0.86 0.11 0.03
Matches are distributed among these distances:
215 6 0.01
216 20 0.02
217 1 0.00
218 13 0.01
219 64 0.07
220 156 0.16
221 4 0.00
222 257 0.26
223 277 0.28
224 102 0.10
225 2 0.00
226 31 0.03
227 46 0.05
228 3 0.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (223 bp):
AGGGAGCGAACCCATTGGCAAATCAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGC
GAACCCATTGGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCAAACCCATTG
GCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCAAGAGGGAGCGAACTCATTGACAGAAGATT
GTTCGAGTTCCATACTCCCTGAAGCAAG
Done.