Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007098.1 Hibiscus syriacus cultivar Beakdansim tig00018546_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92602
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:2600 original size:14 final size:15
Alignment explanation
Indices: 2565--2602 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
2555 ATAATATATA
2565 AAAATAATAATGTCAT
1 AAAATAATAA-GTCAT
*
2581 AGAATAATAA-TCAT
1 AAAATAATAAGTCAT
2595 AAAATAAT
1 AAAATAAT
2603 TTATAGTGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 11 0.55
16 9 0.45
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (15 bp):
AAAATAATAAGTCAT
Found at i:2902 original size:25 final size:26
Alignment explanation
Indices: 2845--2902 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 26
2835 GCTTAAACTA
* *
2845 AAAAAATTCTTTAAACTATTTTTTTC
1 AAAAAATTCATTAAACTATTTTTATC
***
2871 TTTAAATT-ATTAAACTATTTTTATC
1 AAAAAATTCATTAAACTATTTTTATC
2896 AAAAAAT
1 AAAAAAT
2903 ATCCTTAATA
Statistics
Matches: 24, Mismatches: 8, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (26 bp):
AAAAAATTCATTAAACTATTTTTATC
Found at i:3496 original size:30 final size:32
Alignment explanation
Indices: 3433--3496 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 32
3423 GTTTTTAAAT
* * *
3433 TTTTTAATATCGTGTTTGTGTTTGTTAATTTA
1 TTTTTAATATCGTGCTTGTATTCGTTAATTTA
*
3465 TTTTTAA-AT-GTGCTTGTATTCGTTTATTTA
1 TTTTTAATATCGTGCTTGTATTCGTTAATTTA
3495 TT
1 TT
3497 ATTCAAGAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 19 0.68
31 2 0.07
32 7 0.25
ACGTcount: A:0.19, C:0.05, G:0.14, T:0.62
Consensus pattern (32 bp):
TTTTTAATATCGTGCTTGTATTCGTTAATTTA
Found at i:3569 original size:23 final size:23
Alignment explanation
Indices: 3525--3594 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
3515 TCACTATTCG
* *
3525 CAAACATATTCGTTTATATGTTCA
1 CAAACATATTCATTTA-GTGTTCA
* *
3549 -AGAACGTGTTCATTTAGTGTTCA
1 CA-AACATATTCATTTAGTGTTCA
*
3572 CAAACATATTTATTTAGTGTTCA
1 CAAACATATTCATTTAGTGTTCA
3595 TTTATCATCC
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
23 25 0.68
24 12 0.32
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.41
Consensus pattern (23 bp):
CAAACATATTCATTTAGTGTTCA
Found at i:10063 original size:20 final size:20
Alignment explanation
Indices: 10026--10064 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
10016 AGATTGAGTG
* * *
10026 GATTTTGATGTTGTTTGCAC
1 GATTTTAATGATGATTGCAC
10046 GATTTTAATGATGATTGCA
1 GATTTTAATGATGATTGCA
10065 AGTTTAGGAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (20 bp):
GATTTTAATGATGATTGCAC
Found at i:10281 original size:20 final size:21
Alignment explanation
Indices: 10235--10295 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
10225 TTCCCCTGTG
*
10235 GGGGGAATCAGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
10258 GGGGGAATCGGTTCCCTC-AA
1 GGGGGAATCGGTTCCCTCAAA
* *
10278 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
10296 TGCATCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 18 0.51
21 2 0.06
22 3 0.09
23 12 0.34
ACGTcount: A:0.20, C:0.26, G:0.33, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:19497 original size:2 final size:2
Alignment explanation
Indices: 19490--19523 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
19480 TGATTCAATC
19490 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19524 CATTTCTAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21097 original size:19 final size:19
Alignment explanation
Indices: 21069--21124 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
21059 TGACTTTTTT
*
21069 GTCAATGTCAACGGTCAAA
1 GTCAAAGTCAACGGTCAAA
*
21088 GTCAAAGTCAACGG--ATAG
1 GTCAAAGTCAACGGTCA-AA
21106 GTCAAAGGTCAACGGTCAA
1 GTCAAA-GTCAACGGTCAA
21125 TGGTCAGGTC
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
17 1 0.03
18 7 0.23
19 21 0.68
20 1 0.03
21 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.18
Consensus pattern (19 bp):
GTCAAAGTCAACGGTCAAA
Found at i:21746 original size:4 final size:4
Alignment explanation
Indices: 21737--21783 Score: 60
Period size: 4 Copynumber: 11.2 Consensus size: 4
21727 AACCCGAATA
21737 TATT TATT TATTT TATT TATT TGA-T TATT TATTT TATT TATT TATT T
1 TATT TATT TA-TT TATT TATT T-ATT TATT TA-TT TATT TATT TATT T
21784 GAAAGGGTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
3 1 0.03
4 29 0.74
5 9 0.23
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:21753 original size:9 final size:9
Alignment explanation
Indices: 21739--21783 Score: 56
Period size: 9 Copynumber: 4.8 Consensus size: 9
21729 CCCGAATATA
21739 TTTATTTAT
1 TTTATTTAT
21748 TTTATTTATT
1 TTTATTTA-T
21758 TGATTATTTAT
1 T--TTATTTAT
21769 TTTATTTA-
1 TTTATTTAT
21777 TTTATTT
1 TTTATTT
21784 GAAAGGGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
8 7 0.21
9 15 0.45
10 2 0.06
11 2 0.06
12 7 0.21
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (9 bp):
TTTATTTAT
Found at i:21764 original size:21 final size:21
Alignment explanation
Indices: 21740--21779 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
21730 CCGAATATAT
21740 TTATTTATTTTATTTATTTGA
1 TTATTTATTTTATTTATTTGA
21761 TTATTTATTTTATTTATTT
1 TTATTTATTTTATTTATTT
21780 ATTTGAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.75
Consensus pattern (21 bp):
TTATTTATTTTATTTATTTGA
Found at i:21765 original size:25 final size:25
Alignment explanation
Indices: 21737--21785 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
21727 AACCCGAATA
21737 TATTTA-TTTATTTTATTTATTTGAT
1 TATTTATTTTA-TTTATTTATTTGAT
21762 TATTTATTTTATTTATTTATTTGA
1 TATTTATTTTATTTATTTATTTGA
21786 AAGGGTTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (25 bp):
TATTTATTTTATTTATTTATTTGAT
Found at i:21766 original size:12 final size:13
Alignment explanation
Indices: 21737--21785 Score: 66
Period size: 13 Copynumber: 3.8 Consensus size: 13
21727 AACCCGAATA
21737 TATTTATTT-ATTT
1 TATTTATTTGA-TT
21750 TATTTATTTGA-T
1 TATTTATTTGATT
*
21762 TATTTATTTTATT
1 TATTTATTTGATT
21775 TATTTATTTGA
1 TATTTATTTGA
21786 AAGGGTTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 11 0.34
13 20 0.62
14 1 0.03
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (13 bp):
TATTTATTTGATT
Found at i:22253 original size:18 final size:18
Alignment explanation
Indices: 22230--22264 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22220 GTAAATGTTT
22230 TATGATAATTTTTTTATA
1 TATGATAATTTTTTTATA
*
22248 TATGATTATTTTTTTAT
1 TATGATAATTTTTTTAT
22265 TTTGCATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.66
Consensus pattern (18 bp):
TATGATAATTTTTTTATA
Found at i:22511 original size:9 final size:10
Alignment explanation
Indices: 22506--22574 Score: 76
Period size: 9 Copynumber: 7.3 Consensus size: 10
22496 CCCATTTTAT
22506 TTATTTATTTA
1 TTATTTA-TTA
22517 TTA-TTATTA
1 TTATTTATTA
*
22526 TTA-TAATTA
1 TTATTTATTA
22535 TTA-TTATTA
1 TTATTTATTA
22544 TTA-TTATTA
1 TTATTTATTA
*
22553 TTATATATTA
1 TTATTTATTA
22563 TTA-TTATTA
1 TTATTTATTA
22572 TTA
1 TTA
22575 AAAAATAATT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
9 39 0.74
10 11 0.21
11 3 0.06
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTATTTATTA
Found at i:22522 original size:3 final size:3
Alignment explanation
Indices: 22514--22574 Score: 104
Period size: 3 Copynumber: 20.0 Consensus size: 3
22504 ATTTATTTAT
*
22514 TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TTA TTA TTA TTA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
22560 TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
22575 AAAAATAATT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
3 52 0.95
4 3 0.05
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:24793 original size:26 final size:27
Alignment explanation
Indices: 24741--24798 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
24731 TAATTCTTTC
*
24741 TTTTCAAAATTTTTATATATACTTATTA
1 TTTTCAAAATATTTATATATAC-TATTA
* *
24769 TTTTCATAATATTTATATGTA-TATTA
1 TTTTCAAAATATTTATATATACTATTA
24795 TTTT
1 TTTT
24799 ATTAATGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 9 0.33
28 18 0.67
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (27 bp):
TTTTCAAAATATTTATATATACTATTA
Found at i:31482 original size:20 final size:21
Alignment explanation
Indices: 31440--31482 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
31430 CAAAAGAACA
*
31440 AAGATATGAAAAGAAGGTGTG
1 AAGATATGAAAACAAGGTGTG
31461 AAGATA-GAAAGACAAGGT-TG
1 AAGATATGAAA-ACAAGGTGTG
31481 AA
1 AA
31483 AGGAGAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.51, C:0.02, G:0.30, T:0.16
Consensus pattern (21 bp):
AAGATATGAAAACAAGGTGTG
Found at i:35474 original size:10 final size:10
Alignment explanation
Indices: 35459--35510 Score: 56
Period size: 10 Copynumber: 5.5 Consensus size: 10
35449 ATTATGCTTG
*
35459 AAAAAAATG-
1 AAAAAAAAGA
*
35468 AAAAAAAGGA
1 AAAAAAAAGA
35478 AAAAAAAAG-
1 AAAAAAAAGA
*
35487 -GAAAAAAGA
1 AAAAAAAAGA
35496 AAAAAAAAGA
1 AAAAAAAAGA
35506 AAAAA
1 AAAAA
35511 GGGGGTCAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
8 7 0.19
9 8 0.22
10 21 0.58
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:35479 original size:18 final size:18
Alignment explanation
Indices: 35458--35510 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
35448 TATTATGCTT
*
35458 GAAAAAAATGAAAAAAAG
1 GAAAAAAAAGAAAAAAAG
*
35476 GAAAAAAAAAGGAAAAAAG
1 G-AAAAAAAAGAAAAAAAG
*
35495 AAAAAAAAAGAAAAAA
1 GAAAAAAAAGAAAAAA
35511 GGGGGTCAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 15 0.50
19 15 0.50
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (18 bp):
GAAAAAAAAGAAAAAAAG
Found at i:35482 original size:11 final size:11
Alignment explanation
Indices: 35468--35493 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
35458 GAAAAAAATG
35468 AAAAAAAGGAA
1 AAAAAAAGGAA
35479 AAAAAAAGGAA
1 AAAAAAAGGAA
35490 AAAA
1 AAAA
35494 GAAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAAAAGGAA
Found at i:35502 original size:9 final size:9
Alignment explanation
Indices: 35458--35510 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
35448 TATTATGCTT
*
35458 GAAAAAAAT
1 GAAAAAAAA
*
35467 GAAAAAAAG
1 GAAAAAAAA
35476 GAAAAAAAA
1 GAAAAAAAA
*
35485 -AGGAAAAAA
1 GA-AAAAAAA
35494 GAAAAAAAAA
1 G-AAAAAAAA
35504 GAAAAAA
1 GAAAAAA
35511 GGGGGTCAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
8 1 0.03
9 28 0.76
10 7 0.19
11 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (9 bp):
GAAAAAAAA
Found at i:35905 original size:19 final size:17
Alignment explanation
Indices: 35863--35911 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
35853 TATTTTCTCT
35863 AAATTCAATTTA-TTTG
1 AAATTCAATTTATTTTG
*
35879 AGATTCAATTTATTTTCG
1 AAATTCAATTTATTTT-G
*
35897 AAAATTCAACTTATT
1 -AAATTCAATTTATT
35912 CTTTTATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 11 0.41
17 3 0.11
18 1 0.04
19 12 0.44
ACGTcount: A:0.37, C:0.10, G:0.06, T:0.47
Consensus pattern (17 bp):
AAATTCAATTTATTTTG
Found at i:37718 original size:344 final size:342
Alignment explanation
Indices: 37075--37720 Score: 990
Period size: 344 Copynumber: 1.9 Consensus size: 342
37065 TTACCAGGTC
* *
37075 AAGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTT
* **
37140 CAACTTTTCGCTTGAATTCATCATTCGATGGATCAGCATTACCAGGTCAAGTTCATAATGAGAAG
66 CAACTTTTCGCTTGAATTCATCATTCGATGGATCAGCATCACCAGGAAAAGTTCATAATGAGAAG
*
37205 AACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAAAATTTGTTCAACCTTTTACTCAAAT
131 AACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAAAACTTGTTCAACCTTTTACTCAAAT
* * ** *
37270 CCATCATTTGATGGATCAGTTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
196 CCATCACTCGATGGATCAACTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAG
*
37335 AAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCATTTGATAGATC
261 AAGAAGAAATTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCCATCATTTGATAGATC
37400 AGCTTTTCTAGAAAAAA
326 AGCTTTTCTAGAAAAAA
*
37417 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTT
* * *
37482 CAACCTTTT-GTTTGAATTCATCATTTGATGGATCAGCATCCCCAGTGAAAGAGTTCATAATGAG
66 CAA-CTTTTCGCTTGAATTCATCATTCGATGGATCAGCATCACCAG-GAAA-AGTTCATAATGAG
* * * *
37546 AAGAACTCATTTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCGCTC
128 AAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAAAACTTGTTCAACCTTTT-ACTC
* * * *
37610 GAATTCATCACTCGATGGATCAACTTTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAG
192 AAATCCATCACTCGATGGATCAACTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAG
* * **
37675 AAAGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTTGACCTTTTGC
257 AAAGAAGAAGAAATTCATAATGAGAAGAACTTGTTCAACCTTTTGC
37721 ATGACTCTAT
Statistics
Matches: 272, Mismatches: 28, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
342 97 0.36
343 12 0.04
344 163 0.60
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (342 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTT
CAACTTTTCGCTTGAATTCATCATTCGATGGATCAGCATCACCAGGAAAAGTTCATAATGAGAAG
AACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAAAACTTGTTCAACCTTTTACTCAAAT
CCATCACTCGATGGATCAACTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAG
AAGAAGAAATTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCCATCATTTGATAGATC
AGCTTTTCTAGAAAAAA
Found at i:37733 original size:113 final size:113
Alignment explanation
Indices: 37075--37720 Score: 864
Period size: 113 Copynumber: 5.7 Consensus size: 113
37065 TTACCAGGTC
* *
37075 AAGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTT
* * * * ***
37140 CAA-CTTTTCGCTTGAATTCATCATTCGATGGATCAGCATTACCAGGTC
66 CAACCTTTT-GCTCGAATTCATCATTTGATGGATCAGCTTTTCCAGAAA
* *
37188 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAAAATTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTT
* * * *
37253 CAACCTTTTACTCAAATCCATCATTTGATGGATCAGTTTTTCCAGAAA
66 CAACCTTTTGCTCGAATTCATCATTTGATGGATCAGCTTTTCCAGAAA
*
37301 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTT
* * * *
37366 CAACCTTTTGCTCAAATCCATCATTTGATAGATCAGCTTTTCTAGAAAAAA
66 CAACCTTTTGCTCGAATTCATCATTTGATGGATCAGCTTTTCCAG---AAA
*
37417 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTT
* * * **
37482 CAACCTTTTGTTTGAATTCATCATTTGATGGATCAGCATCCCCAGTGAAA
66 CAACCTTTTGCTCGAATTCATCATTTGATGGATCAGCTTTTCCA--GAAA
* * *
37532 GAGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTT
* * * *
37597 CAA-CTTTTCGCTCGAATTCATCACTCGATGGATCAACTTTTCCAGAGA
66 CAACCTTTT-GCTCGAATTCATCATTTGATGGATCAGCTTTTCCAGAAA
* * * *
37645 GAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAGCTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTT
**
37710 TGACCTTTTGC
66 CAACCTTTTGC
37721 ATGACTCTAT
Statistics
Matches: 478, Mismatches: 47, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
113 265 0.55
114 15 0.03
115 94 0.20
116 103 0.22
118 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (113 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTT
CAACCTTTTGCTCGAATTCATCATTTGATGGATCAGCTTTTCCAGAAA
Found at i:37788 original size:124 final size:119
Alignment explanation
Indices: 37635--37863 Score: 311
Period size: 120 Copynumber: 1.9 Consensus size: 119
37625 TGGATCAACT
* * *
37635 TTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAGAGTTCACAATCAGAAGAACTCATCT---G-AAGAAGAAGAAGTTCACAATGAGA
**
37700 AGAGCTTGTTTGACCTTTTGC-ATGACT-CTATCACAGAAGGAGATATATCATCATCAGCA
62 AGAGCTTGTTCAACC-TTTGCTA-GACTAC-ATCACAGAAGGAGATATATCATCATCAGCA
37759 TTTCCAGA-AGAAGTTCACAATCAGAAGAACTCATCTGAAGAAGAAGAAGTTCACAATGAGAAGA
1 TTTCCAGAGAG-AGTTCACAATCAGAAGAACTCATCTGAAGAAGAAGAAGTTCACAATGAGAAGA
*
37823 GCTTGTTCAACCTTTGCTAGATTACATCACAGAAGGAGATA
65 GCTTGTTCAACCTTTGCTAGACTACATCACAGAAGGAGATA
37864 AATTGTCATC
Statistics
Matches: 96, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
119 24 0.25
120 38 0.40
121 1 0.01
123 2 0.02
124 31 0.32
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (119 bp):
TTTCCAGAGAGAGTTCACAATCAGAAGAACTCATCTGAAGAAGAAGAAGTTCACAATGAGAAGAG
CTTGTTCAACCTTTGCTAGACTACATCACAGAAGGAGATATATCATCATCAGCA
Found at i:37822 original size:17 final size:17
Alignment explanation
Indices: 37764--37822 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
37754 CAGCATTTCC
*
37764 AGAAGAAGTTCACAATC
1 AGAAGAAGTTCACAATG
*
37781 AGAAGAA-CTCATCTGAA-G
1 AGAAGAAGTTCA-C--AATG
37799 AAGAAGAAGTTCACAATG
1 -AGAAGAAGTTCACAATG
37817 AGAAGA
1 AGAAGA
37823 GCTTGTTCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
16 3 0.09
17 16 0.48
18 1 0.03
19 10 0.30
20 3 0.09
ACGTcount: A:0.49, C:0.14, G:0.22, T:0.15
Consensus pattern (17 bp):
AGAAGAAGTTCACAATG
Found at i:38080 original size:3 final size:3
Alignment explanation
Indices: 38072--38146 Score: 98
Period size: 3 Copynumber: 25.0 Consensus size: 3
38062 ATTTATTTAT
* * * *
38072 TTA TTA TTA TTA TTA TTA TAA TAA TAA TAA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
38120 TTA TTA -TA TATA TTA TTA TTA TTA TTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA
38147 AAAAATAATT
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
2 2 0.03
3 63 0.93
4 3 0.04
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:40396 original size:4 final size:4
Alignment explanation
Indices: 40387--40417 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
40377 GAACTTTGAT
40387 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
40418 TTTTCTTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:50860 original size:9 final size:9
Alignment explanation
Indices: 50828--50870 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
50818 AAATAAAGAA
50828 TTTATTATT
1 TTTATTATT
50837 TTT-TT-TT
1 TTTATTATT
50844 ATTT-TTATT
1 -TTTATTATT
50853 TTTATTATT
1 TTTATTATT
50862 TTTATTATT
1 TTTATTATT
50871 CATAGGTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
7 2 0.06
8 10 0.32
9 19 0.61
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTATT
Found at i:50860 original size:15 final size:15
Alignment explanation
Indices: 50836--50867 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
50826 AATTTATTAT
*
50836 TTTTTTTTATTTTTA
1 TTTTTATTATTTTTA
50851 TTTTTATTATTTTTA
1 TTTTTATTATTTTTA
50866 TT
1 TT
50868 ATTCATAGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTATTATTTTTA
Found at i:51808 original size:12 final size:11
Alignment explanation
Indices: 51765--51810 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
51755 ATTGAGGTAC
51765 TTCATTTTGCA
1 TTCATTTTGCA
* * *
51776 CTCATTCTACA
1 TTCATTTTGCA
51787 TTCATTTTGCA
1 TTCATTTTGCA
51798 TTCATTTTTGCA
1 TTCA-TTTTGCA
51810 T
1 T
51811 AACATAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
11 20 0.71
12 8 0.29
ACGTcount: A:0.20, C:0.22, G:0.07, T:0.52
Consensus pattern (11 bp):
TTCATTTTGCA
Found at i:58726 original size:29 final size:26
Alignment explanation
Indices: 58677--58735 Score: 82
Period size: 28 Copynumber: 2.2 Consensus size: 26
58667 CTGACTCGAA
*
58677 TATATTAATATTTTATAATTATATATAT
1 TATAATAATATTTTATAATTAT-T-TAT
58705 TATAATAATATATTTATAATTATTTAT
1 TATAATAATAT-TTTATAATTATTTAT
58732 TATA
1 TATA
58736 TTTTAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 7 0.24
28 11 0.38
29 11 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
TATAATAATATTTTATAATTATTTAT
Found at i:58795 original size:21 final size:22
Alignment explanation
Indices: 58764--58808 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
58754 TTATAATTTT
58764 TATATTTTTAATAAT-TAAAGAA
1 TATATTTTTAATAATATAAA-AA
58786 TATA-TTTTAATAATATAAAAA
1 TATATTTTTAATAATATAAAAA
58807 TA
1 TA
58809 AAAATCCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
TATATTTTTAATAATATAAAAA
Found at i:63295 original size:35 final size:34
Alignment explanation
Indices: 63230--63310 Score: 83
Period size: 35 Copynumber: 2.3 Consensus size: 34
63220 ATTCTTAGGA
* *
63230 AACTTTTTGTTCCATCAAACCGTTATTTCTCATG
1 AACTTTTTGTTCCATCAAACCGTAAATTCTCATG
* *
63264 AACTTTCTTTTTCCATCAAACC-TAACATTCTCAAG
1 AACTTT-TTGTTCCATCAAACCGTAA-ATTCTCATG
*
63299 AAACTTATTGTT
1 -AACTTTTTGTT
63311 ATTAAAAAGG
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
34 8 0.21
35 25 0.66
36 5 0.13
ACGTcount: A:0.28, C:0.23, G:0.06, T:0.42
Consensus pattern (34 bp):
AACTTTTTGTTCCATCAAACCGTAAATTCTCATG
Found at i:64623 original size:199 final size:200
Alignment explanation
Indices: 64154--64628 Score: 471
Period size: 199 Copynumber: 2.4 Consensus size: 200
64144 CAATTGAAAC
* * * * * *** *
64154 ATAAGTATCAATACTATGCCTATAATCTTATAAATTACG-AAAATTATTAGATTAATTTCCCGAA
1 ATAAATATCAATATTACGCCTCTAATCTTATAAATTACGAAAAATT-TCAGATTAACAACTCGAA
* * * * * *
64218 AATACTC-CTCGAACATACCTAACAAACCATTTTAGTTTATTTTTCATGCACTAAACAAAGCTTT
65 AATAC-CACTCGGATATGCATATCAAACCATTTTAGTTTATTTTTCATGCACAAAACAAAGCTTT
* * * * *
64282 AGAACCATTTTGAACGTGATTTTTACCCCGCTTATAATGTCTCGTATGAGCCGATATTACCTTCA
129 AGAACCATTTTCAACG-AATTTTTACCACGCTTACAATATCTCGTATGAGCCGATATTACCTTCA
* *
64347 ATTGAAAG
193 ACTAAAAG
* * * * *
64355 ATAAATATTAATATTATGCCTCTAATCTTATAAATTATGAAAAATTTCAGATTAACTACTCGGAA
1 ATAAATATCAATATTACGCCTCTAATCTTATAAATTACGAAAAATTTCAGATTAACAACTCGAAA
*
64420 ATACCACTCGGATATGCATATCAAACCATTTTAGTTTTTTTTTCATGCACAAAAC-AAGCTTT-G
66 ATACCACTCGGATATGCATATCAAACCATTTTAGTTTATTTTTCATGCACAAAACAAAGCTTTAG
* * * *
64483 AAACCATTTTCACAC-AATTTTTGA-CATGCTTACAATATCTTGTATGTGTCGATATTAGCC-TC
131 -AACCATTTTCA-ACGAATTTTT-ACCACGCTTACAATATCTCGTATGAGCCGATATTA-CCTTC
64545 AACTAAAAG
192 AACTAAAAG
* * ** * *
64554 ATAAAT-TCCAATATTACGCCTCTAATTTTATAAATTGCGAAATTTTTTATATTAACAACTCGAA
1 ATAAATAT-CAATATTACGCCTCTAATCTTATAAATTACGAAAAATTTCAGATTAACAACTCGAA
*
64618 AATACCCCTCG
65 AATACCACTCG
64629 AAAGTGCCTA
Statistics
Matches: 227, Mismatches: 40, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
198 1 0.00
199 103 0.45
200 21 0.09
201 96 0.42
202 6 0.03
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (200 bp):
ATAAATATCAATATTACGCCTCTAATCTTATAAATTACGAAAAATTTCAGATTAACAACTCGAAA
ATACCACTCGGATATGCATATCAAACCATTTTAGTTTATTTTTCATGCACAAAACAAAGCTTTAG
AACCATTTTCAACGAATTTTTACCACGCTTACAATATCTCGTATGAGCCGATATTACCTTCAACT
AAAAG
Found at i:66196 original size:35 final size:35
Alignment explanation
Indices: 66131--66199 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
66121 CCTTAGGTCC
* *
66131 ATAAGGAATTACCAGCTTGATCGATCTGAACCTAT
1 ATAAGGAATTACCAACTTGACCGATCTGAACCTAT
*
66166 ATAAGGAATTACCAATTTGACCGAGT-TGAACCTA
1 ATAAGGAATTACCAACTTGACCGA-TCTGAACCTA
66200 CAGAGAGTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 29 0.97
36 1 0.03
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (35 bp):
ATAAGGAATTACCAACTTGACCGATCTGAACCTAT
Found at i:68083 original size:13 final size:13
Alignment explanation
Indices: 68054--68102 Score: 82
Period size: 13 Copynumber: 3.8 Consensus size: 13
68044 TAGTTGACCC
68054 GACCCGA-CCGTT
1 GACCCGACCCGTT
68066 GACCCGACCCGTT
1 GACCCGACCCGTT
*
68079 AACCCGACCCGTT
1 GACCCGACCCGTT
68092 GACCCGACCCG
1 GACCCGACCCG
68103 ACCGTTGACC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
12 7 0.21
13 27 0.79
ACGTcount: A:0.18, C:0.47, G:0.22, T:0.12
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:68109 original size:17 final size:17
Alignment explanation
Indices: 68032--68112 Score: 79
Period size: 17 Copynumber: 5.2 Consensus size: 17
68022 GACCGGTCAC
**
68032 GACCCGACCCGATAGTT
1 GACCCGACCCGACCGTT
68049 GACCCGACCCGACCGTT
1 GACCCGACCCGACCGTT
68066 GACCCGA--C--CCGTT
1 GACCCGACCCGACCGTT
*
68079 AACCCGA--C--CCGTT
1 GACCCGACCCGACCGTT
68092 GACCCGACCCGACCGTT
1 GACCCGACCCGACCGTT
68109 GACC
1 GACC
68113 GTTGACCGTT
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
13 23 0.41
15 2 0.04
17 31 0.55
ACGTcount: A:0.20, C:0.44, G:0.22, T:0.14
Consensus pattern (17 bp):
GACCCGACCCGACCGTT
Found at i:68114 original size:7 final size:7
Alignment explanation
Indices: 68102--68141 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
68092 GACCCGACCC
68102 GACCGTT
1 GACCGTT
68109 GACCGTT
1 GACCGTT
68116 GACCGTT
1 GACCGTT
68123 GACCGTT
1 GACCGTT
68130 GACCGTT
1 GACCGTT
68137 GACCG
1 GACCG
68142 GTGCTATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.15, C:0.30, G:0.30, T:0.25
Consensus pattern (7 bp):
GACCGTT
Found at i:75349 original size:13 final size:13
Alignment explanation
Indices: 75320--75368 Score: 82
Period size: 13 Copynumber: 3.8 Consensus size: 13
75310 TAGTTGACCC
75320 GACCCGA-CCGTT
1 GACCCGACCCGTT
75332 GACCCGACCCGTT
1 GACCCGACCCGTT
*
75345 AACCCGACCCGTT
1 GACCCGACCCGTT
75358 GACCCGACCCG
1 GACCCGACCCG
75369 ACCGTTGACC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
12 7 0.21
13 27 0.79
ACGTcount: A:0.18, C:0.47, G:0.22, T:0.12
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:75375 original size:17 final size:17
Alignment explanation
Indices: 75298--75378 Score: 79
Period size: 17 Copynumber: 5.2 Consensus size: 17
75288 GACCGGTCAC
**
75298 GACCCGACCCGATAGTT
1 GACCCGACCCGACCGTT
75315 GACCCGACCCGACCGTT
1 GACCCGACCCGACCGTT
75332 GACCCGA--C--CCGTT
1 GACCCGACCCGACCGTT
*
75345 AACCCGA--C--CCGTT
1 GACCCGACCCGACCGTT
75358 GACCCGACCCGACCGTT
1 GACCCGACCCGACCGTT
75375 GACC
1 GACC
75379 GTTGACCGTT
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
13 23 0.41
15 2 0.04
17 31 0.55
ACGTcount: A:0.20, C:0.44, G:0.22, T:0.14
Consensus pattern (17 bp):
GACCCGACCCGACCGTT
Found at i:75380 original size:7 final size:7
Alignment explanation
Indices: 75368--75414 Score: 94
Period size: 7 Copynumber: 6.7 Consensus size: 7
75358 GACCCGACCC
75368 GACCGTT
1 GACCGTT
75375 GACCGTT
1 GACCGTT
75382 GACCGTT
1 GACCGTT
75389 GACCGTT
1 GACCGTT
75396 GACCGTT
1 GACCGTT
75403 GACCGTT
1 GACCGTT
75410 GACCG
1 GACCG
75415 GTGCTATTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.15, C:0.30, G:0.30, T:0.26
Consensus pattern (7 bp):
GACCGTT
Found at i:77802 original size:4 final size:4
Alignment explanation
Indices: 77789--77826 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
77779 TATTAGTTAA
*
77789 AAAT -AAT AAAT AAAT AAAT AAAT AATAT AGAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AA
77827 GTATCAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 3 0.10
4 24 0.80
5 3 0.10
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:77810 original size:21 final size:21
Alignment explanation
Indices: 77786--77826 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
77776 AATTATTAGT
77786 TAAA-AATAATAAATAAATAAA
1 TAAATAAT-ATAAATAAATAAA
*
77807 TAAATAATATAGATAAATAA
1 TAAATAATATAAATAAATAA
77827 GTATCAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (21 bp):
TAAATAATATAAATAAATAAA
Found at i:86454 original size:15 final size:15
Alignment explanation
Indices: 86434--86463 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
86424 TGTTAGTAGC
86434 AGTTCTTAATCTTTT
1 AGTTCTTAATCTTTT
86449 AGTTCTTAATCTTTT
1 AGTTCTTAATCTTTT
86464 CTAAGTGCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.07, T:0.60
Consensus pattern (15 bp):
AGTTCTTAATCTTTT
Found at i:88567 original size:12 final size:12
Alignment explanation
Indices: 88550--88611 Score: 115
Period size: 12 Copynumber: 5.2 Consensus size: 12
88540 CTAGGAGTCA
88550 GTATGTGCGAAT
1 GTATGTGCGAAT
88562 GTATGTGCGAAT
1 GTATGTGCGAAT
88574 GTATGTGCGAAT
1 GTATGTGCGAAT
*
88586 GTATGTGCAAAT
1 GTATGTGCGAAT
88598 GTATGTGCGAAT
1 GTATGTGCGAAT
88610 GT
1 GT
88612 GGATTGAAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 48 1.00
ACGTcount: A:0.26, C:0.08, G:0.32, T:0.34
Consensus pattern (12 bp):
GTATGTGCGAAT
Done.