Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007099.1 Hibiscus syriacus cultivar Beakdansim tig00018548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93637

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
406--453
23
2.1
23
88
11
73
18
33
41
6
1.76
10221--10264
20
2.2
20
100
0
88
34
29
9
27
1.87
18103--18179
23
3.5
22
84
7
93
24
35
22
18
1.96
18116--18179
21
3.0
21
88
4
83
26
32
23
17
1.96
18531--18563
16
2.1
16
100
0
66
51
6
0
42
1.26
24245--24283
18
2.2
18
86
4
53
79
2
7
10
1.02
24264--24312
21
2.3
22
92
3
82
79
0
12
8
0.93
27237--27277
16
2.6
16
85
14
50
0
9
2
87
0.62
27237--27275
9
4.4
9
83
6
53
0
10
2
87
0.65
33907--33932
2
13.0
2
100
0
52
50
0
0
50
1.00
37006--37088
24
3.5
24
72
0
67
48
15
14
21
1.81
38818--38878
13
4.3
13
73
18
59
14
24
44
16
1.85
38824--38883
18
3.6
17
74
21
65
11
25
46
16
1.81
38818--38883
31
2.1
31
91
0
105
13
24
45
16
1.84
39873--39905
14
2.3
15
89
5
50
75
3
9
12
1.14
40779--40833
23
2.4
23
84
0
65
38
3
10
47
1.56
42850--42902
21
2.5
21
84
9
63
13
0
9
77
0.99
47706--47737
16
2.0
16
100
0
64
31
0
0
68
0.90
47813--47855
21
2.0
21
81
0
50
62
0
6
30
1.21
53967--54100
69
1.9
69
86
3
180
32
20
18
29
1.96
61302--61340
17
2.3
17
90
0
60
53
0
2
43
1.14
72425--72472
20
2.4
20
92
0
78
29
14
10
45
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75510--75661
20
7.4
20
67
7
99
36
23
21
18
1.95
75500--75697
41
4.8
41
92
2
326
35
22
20
21
1.96
75536--75603
21
3.3
21
70
4
75
30
26
22
20
1.98
76675--76724
9
5.7
9
81
11
59
52
0
0
48
1.00
82735--82770
16
2.2
16
100
0
72
38
8
22
30
1.83
87959--88744
391
2.0
390
89
2
1193
38
20
12
28
1.89
93086--93217
23
5.9
23
81
12
143
25
20
25
28
1.99
93086--93217
44
3.0
44
82
10
160
25
20
25
28
1.99

Tables:   1

The End!