genome.fa.s71.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000071.1 Hibiscus syriacus cultivar Beakdansim tig00000125_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126842

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7344--7410	35	1.9	36	87	6	102	73	2	16	7	1.19
11336--11385	23	2.2	23	100	0	100	26	32	16	26	1.96
13133--13164	15	2.0	17	88	11	50	43	12	18	25	1.85
34675--34708	17	2.0	17	88	0	50	64	5	0	29	1.17
35907--35952	2	23.0	2	100	0	92	50	0	0	50	1.00
35999--36054	26	2.1	28	86	6	80	48	3	0	48	1.19
39711--40530	412	2.0	412	99	0	1631	32	18	23	25	1.97
60462--60504	22	2.0	21	81	4	50	58	6	2	32	1.38
61912--62182	130	2.1	130	81	4	314	33	19	17	29	1.94
63466--63503	20	1.9	20	88	0	58	21	26	10	42	1.85
64481--64521	2	20.5	2	100	0	82	51	0	0	48	1.00
66866--67088	96	2.3	95	84	3	279	36	15	21	26	1.93
67430--68027	57	10.5	57	90	2	916	35	11	20	32	1.89
68679--68792	45	2.5	45	85	0	147	48	6	21	24	1.73
70420--70448	2	14.5	2	100	0	58	51	0	0	48	1.00
72097--72289	96	2.0	98	81	4	230	37	14	21	26	1.92
72249--72300	19	2.6	19	81	9	59	42	17	13	26	1.86
72253--72300	22	2.4	19	79	10	51	43	16	12	27	1.84
72659--73143	57	8.5	57	90	0	756	36	12	19	31	1.89
73740--73838	45	2.2	45	81	3	110	47	6	23	23	1.73
77743--77861	52	2.3	52	94	0	211	26	31	12	29	1.93
85068--85094	12	2.2	12	100	0	54	44	0	18	37	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94951--95135	101	1.8	101	81	2	228	29	23	17	29	1.97
97599--97641	18	2.4	18	92	0	68	39	4	25	30	1.76
97785--97851	28	2.4	28	89	0	107	40	1	13	44	1.53
100197--100260	22	2.9	22	80	2	65	21	20	23	34	1.97
104728--104797	22	3.2	22	74	8	70	20	17	24	38	1.93
111976--112037	19	3.5	18	81	12	67	29	19	16	35	1.93
112032--112072	17	2.5	17	88	4	57	26	14	17	41	1.88
112311--112345	18	1.9	18	100	0	70	22	11	22	42	1.85
114949--115002	24	2.2	24	86	0	72	42	24	7	25	1.80
115144--115209	3	22.0	3	96	0	123	33	1	0	65	1.02
115342--115391	2	25.0	2	100	0	100	50	0	0	50	1.00
120245--120318	32	2.3	32	78	0	76	33	9	27	29	1.88
120580--120708	64	2.0	63	89	1	195	35	21	10	31	1.88
120915--121027	43	2.6	43	80	0	118	29	27	18	24	1.98
121503--121624	43	2.8	43	85	2	156	30	28	17	23	1.97
121439--122036	207	2.9	205	86	2	822	30	27	18	23	1.98
121709--121819	43	2.6	43	85	0	150	28	32	18	20	1.96
121916--122025	43	2.6	43	88	0	157	27	31	19	21	1.97
121916--122038	43	2.9	43	85	2	149	28	30	20	21	1.98
122504--122624	43	2.8	43	83	0	152	31	29	14	24	1.94
122929--123089	37	4.4	37	78	5	157	24	19	16	39	1.92
123030--123193	67	2.5	66	79	9	172	29	18	14	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123209--123368	69	2.3	68	83	4	205	31	18	10	40	1.84
123459--123874	43	9.6	43	68	13	158	24	30	18	26	1.98
123541--123743	48	4.5	48	66	21	141	24	27	18	29	1.98
123435--123923	131	3.7	131	85	3	585	24	29	18	26	1.98
123459--123879	40	9.7	45	69	15	208	24	30	18	26	1.98
124086--124134	3	16.3	3	95	0	89	34	2	0	63	1.06
124418--124785	146	2.5	147	81	6	413	34	20	24	19	1.96

Tables:   1

The End!