Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007100.1 Hibiscus syriacus cultivar Beakdansim tig00018552_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99052

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2048--2108
31
2.0
31
96
0
113
52
13
8
26
1.67
5750--5805
26
2.2
26
83
6
69
60
3
0
35
1.14
7166--7196
12
2.6
12
100
0
62
67
0
0
32
0.91
12285--12410
37
3.4
36
76
4
117
41
6
17
34
1.75
12236--12498
74
3.6
74
80
9
272
37
8
19
34
1.83
12345--12460
36
3.1
38
64
14
89
37
6
20
34
1.80
12477--12595
37
3.1
37
75
8
105
38
10
17
32
1.85
23486--23630
49
3.0
49
91
0
227
24
22
20
32
1.98
28234--28482
59
4.1
59
75
8
207
15
16
11
57
1.66
28226--28484
30
8.5
30
75
9
195
15
16
11
57
1.66
28234--28484
89
2.8
89
84
6
290
15
16
11
56
1.66
28749--28780
5
6.4
5
92
0
55
18
0
3
78
0.89
31092--31117
12
2.2
12
100
0
52
19
15
34
30
1.93
37596--37627
17
1.9
17
93
6
57
62
3
6
28
1.34
38236--38291
16
3.5
16
75
0
67
16
8
30
44
1.78
38234--38368
32
4.2
32
80
3
155
17
11
28
42
1.83
38252--38306
16
3.4
16
74
0
65
18
10
29
41
1.84
40058--40123
30
2.2
30
94
0
114
21
25
34
18
1.96
40728--40829
50
2.0
50
100
0
204
56
15
1
25
1.50
41004--41079
30
2.5
30
91
0
116
17
35
25
22
1.95
45482--45509
2
14.0
2
100
0
56
50
0
0
50
1.00
49950--50011
31
2.2
28
81
16
74
17
24
29
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51272--51329
20
2.9
20
76
7
55
44
1
1
51
1.21
53491--53518
13
2.2
13
100
0
56
7
25
7
60
1.48
58185--58268
38
2.2
38
97
0
159
34
22
8
34
1.84
69912--69939
2
14.0
2
100
0
56
50
0
0
50
1.00
71404--71442
14
2.8
14
84
0
51
35
28
12
23
1.91
72997--73048
22
2.3
21
78
18
52
55
1
0
42
1.10
78286--78330
13
3.4
13
80
17
56
44
8
0
46
1.34
78501--78525
2
12.5
2
100
0
50
48
0
0
52
1.00
78902--78932
2
15.5
2
100
0
62
51
0
0
48
1.00
84590--84644
16
3.2
17
75
12
58
47
0
3
49
1.19
85441--85489
2
24.5
2
95
0
89
53
0
0
46
1.00
86600--86641
21
2.0
21
90
0
66
26
26
21
26
1.99
86729--86781
19
2.8
19
85
0
79
32
9
13
45
1.75
86859--86918
29
2.0
31
90
6
97
41
16
6
35
1.75
91218--91279
23
2.7
23
87
0
88
33
11
17
37
1.86
91361--91401
16
2.6
16
88
3
57
29
21
12
36
1.90
92585--92615
2
15.5
2
100
0
62
51
0
0
48
1.00
93144--93217
36
2.1
36
84
0
94
33
2
16
47
1.61

Tables:   1

The End!