genome.fa.s7101.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007101.1 Hibiscus syriacus cultivar Beakdansim tig00018555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142622

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709--773	31	2.1	31	85	0	85	24	18	23	33	1.96
732--807	30	2.5	30	82	2	80	22	21	25	31	1.98
759--830	29	2.4	30	86	2	92	20	20	29	29	1.98
2934--2992	26	2.2	27	96	3	111	28	28	10	32	1.90
6120--6236	35	3.2	36	89	6	166	43	18	5	32	1.72
6165--6228	20	3.4	20	66	29	59	45	18	4	31	1.70
10688--10779	37	2.6	36	88	6	134	43	20	4	31	1.71
14817--14849	16	2.0	17	94	5	59	42	18	0	39	1.50
15254--15304	27	1.9	27	84	4	68	43	21	1	33	1.64
15278--15360	35	2.3	37	93	6	152	44	18	6	31	1.73
15273--15387	35	3.3	35	85	8	128	42	18	6	32	1.77
17966--17991	13	2.0	13	100	0	52	38	38	0	23	1.55
20844--20870	6	4.5	6	100	0	54	14	33	14	37	1.88
23605--24260	228	2.9	228	88	0	990	16	24	30	28	1.96
23434--24260	456	1.8	456	83	1	1120	18	25	28	28	1.98
25246--25306	23	2.5	24	76	15	63	39	3	3	54	1.33
26322--26384	23	2.7	23	80	0	72	28	12	12	46	1.79
29314--29445	67	2.0	67	90	0	210	31	25	15	27	1.96
35461--35504	21	2.1	21	86	0	61	31	27	25	15	1.96
36015--36061	23	2.0	24	91	4	78	44	0	21	34	1.52
36239--36394	31	5.0	31	93	1	260	21	19	21	37	1.95
39393--39436	21	2.1	21	86	0	61	31	27	25	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39948--39994	23	2.0	24	91	4	78	44	0	21	34	1.52
40172--40327	31	5.0	31	93	1	260	21	19	21	37	1.95
50981--51039	20	2.8	21	79	7	66	23	35	16	23	1.95
51054--51126	20	3.7	20	78	7	76	19	27	20	32	1.97
54373--54429	30	1.9	30	92	0	96	35	8	17	38	1.81
54602--54673	20	3.6	20	86	3	101	18	27	23	30	1.97
55040--55109	34	2.1	32	86	5	95	31	15	30	22	1.95
60628--60708	23	3.7	22	86	4	103	23	30	23	22	1.99
62879--62909	16	1.9	16	93	0	53	41	0	29	29	1.56
72997--73226	20	11.2	20	75	7	185	39	24	19	16	1.92
73054--73226	42	4.2	42	86	3	260	38	24	19	17	1.93
72999--73226	82	2.8	81	84	7	282	39	24	19	16	1.92
73322--73414	6	16.5	6	98	1	144	29	53	17	0	1.44
73908--74027	6	20.5	6	99	0	219	0	16	51	31	1.45
74049--74181	20	6.6	20	75	7	108	15	20	23	41	1.89
75562--75632	29	2.4	30	74	4	74	19	21	7	52	1.70
82828--82944	60	2.0	60	83	6	148	35	17	15	31	1.91
87178--87208	16	1.9	16	100	0	62	51	25	9	12	1.70
87244--87296	23	2.4	22	87	3	79	33	20	18	26	1.96
89293--89335	21	2.0	21	86	0	59	46	30	0	23	1.52
89287--89359	28	2.6	29	82	8	80	46	30	0	23	1.52
89324--89367	21	2.1	21	83	8	54	47	27	0	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90068--90108	14	3.1	14	76	20	52	41	0	4	53	1.22
96860--97017	81	2.0	81	93	0	271	15	31	22	31	1.95
97130--97432	54	5.5	54	80	7	324	25	26	22	26	2.00
97136--97378	27	8.8	28	67	19	127	25	26	22	25	2.00
100347--100422	31	2.4	31	73	6	73	39	19	3	36	1.71
101479--101571	30	3.1	30	98	0	177	27	19	18	34	1.95
104897--104956	17	3.5	17	80	15	70	66	0	0	33	0.92
104902--104956	3	18.7	3	75	17	53	65	0	0	34	0.93
104898--104954	28	2.0	28	86	6	78	66	0	0	33	0.92
105252--105478	43	5.4	43	71	15	138	25	18	30	25	1.98
105144--105501	128	2.7	125	78	8	340	25	17	31	25	1.97
105524--105600	28	2.6	28	84	13	102	49	12	12	24	1.77
105707--105786	36	2.3	35	82	10	92	37	15	17	30	1.90
105891--105965	31	2.4	30	82	12	82	41	12	17	29	1.85
106144--106237	28	3.3	28	77	5	91	45	11	17	25	1.82
106197--106367	64	2.6	63	83	4	207	45	13	12	28	1.80
106116--106455	186	1.8	183	83	5	452	43	12	14	29	1.82
106320--106411	29	3.1	30	89	4	134	43	14	9	32	1.78
107199--107283	4	22.2	4	83	9	106	22	0	23	54	1.45
107520--107567	20	2.4	20	96	0	87	25	6	12	56	1.59
112350--112412	19	3.4	19	72	20	53	63	0	0	36	0.95
112765--112807	20	2.1	21	87	8	63	44	0	4	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116974--117013	15	2.7	15	88	3	55	25	10	5	60	1.49
119213--119349	60	2.3	60	83	2	159	39	16	13	29	1.88
121934--121989	23	2.4	23	84	0	67	30	23	25	21	1.99
122219--122280	30	2.1	30	93	0	106	33	22	3	40	1.70
122812--122867	21	2.7	21	88	0	85	28	19	25	26	1.99
126306--126345	21	1.9	21	89	0	62	22	22	5	50	1.68
128910--128965	23	2.4	23	87	0	76	28	23	26	21	1.99
129192--129253	30	2.1	30	90	6	99	33	22	4	38	1.76
129749--129802	21	2.6	21	87	0	72	27	20	25	25	1.99
129762--129804	21	2.0	21	95	0	77	32	13	25	27	1.94
135789--135818	12	2.5	12	94	0	51	70	10	0	20	1.16
135840--135869	11	2.7	11	100	0	60	6	16	0	76	0.99
136857--136913	30	1.9	30	85	0	78	28	12	10	49	1.73
137290--137319	6	5.0	6	91	0	51	83	3	0	13	0.77
141161--141302	72	2.0	72	100	0	284	57	7	2	33	1.37

Tables:   1

The End!