genome.fa.s7102.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007102.1 Hibiscus syriacus cultivar Beakdansim tig00018556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149001

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6884--6931	24	2.0	25	87	4	71	47	14	22	14	1.81
8185--8212	3	9.3	3	100	0	56	0	35	0	64	0.94
9762--9813	20	2.7	20	85	11	65	42	0	1	55	1.10
12716--12740	13	1.9	13	100	0	50	48	0	0	52	1.00
23706--23793	37	2.4	37	98	0	167	21	17	25	36	1.94
26795--26822	2	14.0	2	100	0	56	50	0	0	50	1.00
27126--27161	2	18.0	2	100	0	72	50	0	0	50	1.00
31900--32087	31	6.0	31	78	10	195	30	19	18	31	1.96
31925--32090	63	2.7	63	96	0	298	31	18	18	31	1.95
36538--36655	32	3.7	31	83	7	157	32	18	16	32	1.94
36510--36675	63	2.7	63	94	0	280	32	18	16	31	1.94
36486--36672	31	5.9	32	77	11	190	31	19	17	31	1.95
40882--40940	30	2.0	29	87	9	84	44	13	3	38	1.61
42229--42289	3	19.0	3	80	12	68	34	0	34	31	1.58
42229--42291	13	4.8	13	96	0	108	36	0	33	30	1.58
42629--42771	60	2.4	60	85	0	187	35	20	5	37	1.77
42838--43005	60	2.8	60	79	7	180	36	4	24	33	1.77
44190--44216	2	13.5	2	100	0	54	51	0	0	48	1.00
55174--55217	20	2.2	20	95	0	79	54	25	4	15	1.60
55511--55550	12	3.3	12	89	0	62	0	40	5	55	1.22
58217--58281	26	2.7	25	73	22	68	10	13	26	49	1.75
64523--64572	3	16.3	3	83	4	64	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65801--65842	16	2.6	16	85	14	52	35	0	0	64	0.94
66665--66699	15	2.3	15	90	5	52	20	5	0	74	1.02
71958--72058	7	13.3	7	79	18	89	80	2	15	0	0.89
71965--72070	26	4.2	25	83	7	124	80	2	16	0	0.89
71969--72070	9	11.8	9	77	10	88	80	2	15	0	0.89
74217--74440	114	2.0	114	91	0	367	33	16	20	29	1.94
76515--76604	40	2.2	41	92	2	146	34	16	21	27	1.95
76804--76830	12	2.2	12	100	0	54	37	22	22	18	1.95
77025--77079	22	2.5	22	90	0	92	32	10	16	40	1.83
77602--77917	165	1.9	167	88	3	487	36	12	12	38	1.81
77925--78357	76	5.7	76	98	0	839	22	19	23	34	1.97
78745--78795	3	16.3	3	84	8	66	37	0	0	62	0.95
78740--78766	12	2.2	12	100	0	54	48	0	0	51	1.00
78757--78795	13	3.1	13	96	3	71	33	0	0	66	0.92
78745--78795	16	3.3	15	86	8	66	37	0	0	62	0.95
80023--80055	16	2.1	16	88	11	50	39	0	0	60	0.97
80061--80094	17	2.0	17	88	11	52	29	5	0	64	1.17
80108--80175	2	34.0	2	93	0	118	50	0	0	50	1.00
87759--88069	159	2.0	159	80	5	360	34	16	21	27	1.95
89882--89943	31	2.0	31	90	6	99	41	14	12	30	1.83
103783--103819	15	2.5	15	95	0	65	37	27	5	29	1.79
107803--107841	20	2.0	20	89	0	60	33	7	17	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107802--107949	53	2.8	52	92	3	253	32	6	12	48	1.66
107855--107894	20	2.0	21	85	14	57	35	5	12	47	1.63
107906--107950	20	2.3	19	88	7	72	35	4	11	48	1.59
112520--112610	20	4.9	20	67	20	63	32	6	15	45	1.72
112519--112666	53	2.8	52	94	3	262	32	6	13	47	1.67
112625--112664	20	2.0	20	95	0	71	37	5	12	45	1.64
113040--113083	23	1.9	23	81	9	54	63	0	15	20	1.31
117012--117059	17	2.8	17	84	12	55	50	0	0	50	1.00
119038--119138	31	3.3	31	88	0	139	50	0	13	35	1.42
119609--119677	24	2.9	24	80	8	77	57	15	14	11	1.64
119658--119702	10	4.5	10	83	10	65	57	11	8	22	1.60
120053--120096	14	3.1	14	81	12	54	59	15	13	11	1.62
121628--121686	22	2.7	22	86	2	75	40	1	0	57	1.09
121650--121686	11	3.4	11	96	0	65	43	0	0	56	0.99
122017--122050	18	1.9	17	88	5	50	29	29	26	14	1.95
122066--122106	10	4.1	10	90	0	55	63	12	17	7	1.50
128563--128642	27	2.6	32	75	20	98	18	26	20	35	1.95
128584--128645	27	2.3	27	97	0	115	20	29	20	29	1.98
128793--128822	6	5.0	6	91	0	51	0	36	33	30	1.58
129452--129484	2	16.5	2	100	0	66	48	0	0	51	1.00
131394--131507	60	1.9	60	81	3	140	45	5	19	29	1.72
133910--133940	3	10.7	3	93	6	55	0	29	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144440--144479	20	2.0	20	100	0	80	30	15	5	50	1.65

Tables:   1

The End!