genome.fa.s7104.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007104.1 Hibiscus syriacus cultivar Beakdansim tig00018567_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49773

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2639--2773	59	2.3	59	84	5	166	33	18	14	33	1.92
12048--12336	42	6.8	41	86	7	384	32	24	24	19	1.97
12048--12335	84	3.4	84	91	2	436	32	24	23	19	1.97
13192--13258	28	2.3	29	87	5	100	43	22	5	28	1.76
13213--13359	78	1.9	78	89	0	231	43	23	6	25	1.78
13374--13451	31	2.5	31	76	10	79	19	17	42	20	1.90
19040--19370	42	7.8	41	88	5	457	32	24	25	18	1.97
19040--19370	84	3.9	84	92	2	531	32	24	25	18	1.97
20226--20378	29	5.3	29	77	5	141	41	23	5	29	1.78
20227--20407	85	2.1	85	82	8	224	41	23	6	28	1.79
20422--20466	18	2.5	18	82	7	56	6	17	53	22	1.67
23143--23243	49	2.1	49	100	0	202	37	4	27	29	1.78
23246--23308	29	2.2	29	91	0	99	31	6	25	36	1.81
26009--26197	30	6.3	30	94	0	317	30	23	23	22	1.99
27542--27586	21	2.1	21	83	0	54	13	24	31	31	1.93
30365--30394	2	15.0	2	92	0	51	50	3	0	46	1.18
30666--30854	30	6.3	30	97	0	344	29	24	23	22	1.99
32198--32242	21	2.1	21	83	0	54	13	24	31	31	1.93
39441--39476	3	12.0	3	100	0	72	66	0	0	33	0.92
39439--39513	15	5.3	13	84	7	60	68	1	0	30	0.98
39469--39519	25	2.0	27	88	7	79	68	3	0	27	1.07
40894--41004	3	36.3	3	75	7	98	57	0	2	38	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41982--42031	24	2.1	24	85	7	66	24	2	14	60	1.45
46488--46524	16	2.2	18	85	9	51	13	8	0	78	0.96
46814--46864	20	2.5	20	84	6	59	15	13	0	70	1.17

Tables:   1

The End!