genome.fa.s7106.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007106.1 Hibiscus syriacus cultivar Beakdansim tig00018569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89029

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3810--3870	23	2.7	23	94	0	113	27	27	27	16	1.97
6310--6743	215	2.0	214	98	0	841	35	17	12	35	1.87
7150--7245	35	2.7	35	85	3	122	39	25	2	33	1.67
7413--7693	147	1.9	148	90	3	449	35	5	10	48	1.61
8256--8289	17	2.0	17	100	0	68	35	17	11	35	1.87
8308--8630	55	5.9	55	89	1	488	27	20	18	34	1.95
10352--10447	35	2.8	34	76	4	93	32	0	25	42	1.55
13049--13279	119	1.9	118	86	6	324	51	6	13	29	1.64
13235--13314	28	2.8	28	81	7	90	46	6	15	32	1.70
17874--17937	26	2.5	26	84	5	85	29	3	21	45	1.67
18286--18333	23	2.1	23	92	0	78	39	14	18	27	1.90
18333--18367	2	17.5	2	100	0	70	51	0	0	48	1.00
19051--19098	23	2.1	22	92	3	78	52	0	0	47	1.00
19621--19673	21	2.6	20	81	3	61	54	3	3	37	1.36
20178--20242	10	6.2	10	80	8	67	67	1	4	26	1.18
20178--20242	21	3.1	20	82	8	67	67	1	4	26	1.18
20810--20851	16	2.6	16	81	11	50	52	0	0	47	1.00
22396--22446	21	2.4	21	83	3	66	60	3	1	33	1.26
22848--22888	20	2.0	22	85	9	59	48	0	0	51	1.00
22960--22995	15	2.5	15	95	4	65	55	0	0	44	0.99
22967--23054	42	2.1	42	82	4	106	53	1	1	44	1.15
22964--23091	21	6.2	20	68	19	68	56	0	1	41	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23039--23088	23	2.1	25	85	7	68	60	0	2	38	1.09
23207--23276	28	2.4	29	86	6	99	57	0	1	41	1.08
23225--23265	21	2.0	21	90	0	64	53	0	0	46	1.00
23206--23276	26	2.5	29	78	17	78	57	0	1	40	1.07
23206--23287	28	3.0	27	75	13	80	57	0	1	41	1.06
26769--26817	3	16.0	3	82	4	62	63	2	2	32	1.17
26785--26829	6	6.7	7	82	12	51	66	0	2	31	1.04
27066--27124	17	3.4	17	70	25	59	15	23	11	49	1.77
27066--27135	36	1.9	36	100	0	140	17	22	12	47	1.81
27070--27157	36	2.4	36	90	5	131	19	22	14	43	1.87
27099--27457	113	3.2	113	84	2	454	28	19	15	37	1.92
27364--27527	73	2.2	73	82	0	184	31	17	18	32	1.94
27283--27644	186	2.0	184	84	1	472	29	17	16	36	1.91
27437--28267	113	7.2	113	85	8	1053	27	19	15	38	1.91
27436--28275	349	2.4	343	85	6	1097	27	19	15	38	1.91
27437--28285	463	1.8	455	84	7	1140	27	19	15	38	1.91
28283--28513	76	3.0	76	94	0	390	35	20	19	24	1.96
28517--28842	164	2.0	165	92	0	546	37	13	13	34	1.85
29350--29404	22	2.5	22	90	0	92	41	14	9	34	1.77
31966--32403	109	4.0	108	90	3	619	31	20	16	31	1.95
32006--32403	216	1.8	220	89	4	633	32	20	16	29	1.95
37700--37760	14	4.3	14	77	4	59	54	9	13	22	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40072--40113	20	2.2	19	86	4	57	64	2	0	33	1.07
39985--40217	120	2.0	117	82	5	281	46	9	7	36	1.64
42048--42093	2	23.0	2	100	0	92	50	0	0	50	1.00
43785--43823	20	2.0	20	100	0	78	17	25	25	30	1.97
51172--51202	14	2.2	14	94	0	53	48	3	0	48	1.17
52789--53369	108	5.2	108	72	13	437	45	18	14	21	1.86
52737--53415	339	2.0	338	94	0	1198	44	19	13	21	1.85
54297--54339	12	3.4	12	78	12	50	58	0	2	39	1.11
54424--54452	3	9.7	3	100	0	58	31	68	0	0	0.89
54765--54856	47	1.9	48	82	10	118	25	2	8	64	1.34
54764--54835	26	2.6	29	80	8	89	25	1	9	63	1.33
58746--58784	19	2.0	21	85	10	55	46	0	5	48	1.24
64041--64075	18	1.9	18	88	0	52	28	17	0	54	1.43
65380--65404	13	1.9	13	100	0	50	20	24	40	16	1.91
65385--65425	18	2.3	18	95	0	73	12	21	48	17	1.79
65377--65453	31	2.5	31	89	0	109	19	20	44	15	1.87
65403--65440	13	2.9	13	88	0	58	18	21	44	15	1.86
65418--65461	18	2.4	18	88	0	70	18	15	47	18	1.83
77829--78136	83	3.7	81	80	5	341	32	21	15	30	1.94
77831--78140	166	1.9	166	84	4	419	33	21	15	29	1.94

Tables:   1

The End!