genome.fa.s7108.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007108.1 Hibiscus syriacus cultivar Beakdansim tig00018574_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126628

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3477--3516	21	1.9	21	85	10	55	35	10	2	52	1.48
6930--6980	25	2.0	25	84	3	66	62	3	21	11	1.45
10587--10625	15	2.6	15	100	0	78	46	38	0	15	1.46
27110--27910	421	1.9	412	92	3	1347	32	8	24	33	1.87
31736--31814	21	3.8	21	87	0	113	21	18	29	30	1.97
37338--37395	24	2.4	24	97	0	107	44	27	18	8	1.79
39955--40001	20	2.3	20	88	3	67	29	23	10	36	1.89
46460--46515	2	30.0	2	76	20	59	48	3	0	48	1.19
47731--47772	17	2.5	17	77	11	50	30	7	2	59	1.37
47843--47889	18	2.6	18	89	0	67	17	8	0	74	1.05
47970--48019	6	8.2	6	77	18	50	18	4	0	78	0.91
47970--48019	22	2.3	20	86	10	64	18	4	0	78	0.91
54054--54094	13	3.2	13	100	0	82	31	0	24	43	1.54
70569--70621	17	3.3	17	65	24	51	56	5	5	32	1.46
70557--70628	31	2.3	31	97	0	135	50	5	8	36	1.56
71100--71186	29	3.0	29	91	1	138	45	12	3	37	1.59
73062--73124	18	3.3	19	74	12	74	52	1	3	42	1.27
73083--73125	21	2.0	21	86	0	59	53	2	2	41	1.26
73129--73322	22	9.2	22	68	25	84	37	8	1	52	1.41
73123--73265	36	4.2	36	77	15	185	34	8	2	54	1.42
73190--73311	44	2.7	44	83	7	131	37	9	0	51	1.41
73146--73322	65	2.6	65	81	10	189	37	8	1	52	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73938--73984	24	2.0	24	87	8	69	55	2	8	34	1.42
73293--74339	525	2.0	514	89	4	1615	48	5	12	33	1.65
74408--74596	27	7.6	25	73	17	112	54	1	8	35	1.40
74422--74762	26	11.9	29	68	24	124	51	2	8	37	1.45
74485--74608	60	2.0	64	85	7	175	53	1	8	37	1.40
74422--74770	81	4.3	79	75	16	272	51	2	8	37	1.45
74503--74741	40	6.2	39	69	22	132	50	2	9	37	1.47
74679--74768	32	2.7	33	76	10	94	52	1	6	40	1.35
75082--75234	65	2.4	64	86	3	200	30	22	15	30	1.95
77862--77950	45	2.0	46	93	2	153	26	19	26	26	1.99
77970--78007	20	1.9	20	94	0	67	18	15	34	31	1.92
93171--93204	13	2.6	13	90	9	52	47	8	5	38	1.59
93548--93703	65	2.4	64	87	3	215	28	23	17	30	1.97
94947--95040	21	4.4	21	70	15	68	35	8	4	52	1.52
94992--95198	8	27.1	8	70	21	101	35	8	2	54	1.44
94959--95198	22	11.3	22	70	17	143	35	7	2	54	1.45
95016--95223	107	1.9	107	83	9	264	36	7	2	53	1.43
94992--95308	95	3.6	83	76	19	249	36	7	2	52	1.45
96869--97559	2	342.5	2	65	19	226	43	4	3	48	1.41
96962--97063	7	14.0	7	74	14	55	36	4	0	57	1.27
96950--97082	41	3.3	41	75	15	134	40	5	0	53	1.29
96872--97150	63	4.4	66	74	16	204	40	5	1	51	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98524--98550	3	9.0	3	100	0	54	66	0	0	33	0.92
106411--106485	39	1.9	39	100	0	150	29	21	21	28	1.98
108167--108196	14	2.1	14	93	0	51	43	0	6	50	1.28
109521--109578	23	2.5	23	85	2	71	41	17	15	25	1.89
109529--109578	23	2.2	23	92	0	82	42	14	18	26	1.87
110701--110728	14	2.0	14	100	0	56	64	14	0	21	1.29
112519--112558	20	2.0	21	90	5	64	45	12	17	25	1.83
116873--116918	24	1.9	24	86	0	65	13	13	13	60	1.59
117129--117173	3	14.7	3	90	4	72	33	2	0	64	1.06
118390--118460	23	3.3	23	75	15	87	28	4	2	64	1.26
118402--118465	11	6.0	11	73	14	53	28	3	1	67	1.15
118407--118454	19	2.6	19	87	9	64	27	4	2	66	1.21
118477--118529	2	26.5	2	100	0	106	49	0	0	50	1.00
118520--118561	21	2.0	21	85	0	57	38	0	2	59	1.10
119450--119504	24	2.3	24	78	9	60	27	7	0	65	1.19

Tables:   1

The End!