Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007109.1 Hibiscus syriacus cultivar Beakdansim tig00018575_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74863

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1156--1195
21
1.9
21
85
10
55
25
15
0
60
1.35
2329--2424
35
2.8
34
76
3
102
42
26
0
31
1.55
4113--4431
55
5.9
55
85
8
431
34
18
19
27
1.96
4113--4431
163
2.0
162
90
4
500
34
18
19
27
1.96
4449--4482
17
2.0
17
100
0
68
35
11
17
35
1.87
5507--5583
35
2.2
35
90
0
118
33
1
23
41
1.63
5992--6424
216
2.0
214
97
1
816
35
12
17
35
1.87
7288--7336
22
2.2
22
82
7
64
32
30
28
8
1.86
8860--8910
23
2.2
23
96
0
93
17
29
27
25
1.98
8895--8925
15
2.1
15
100
0
62
25
29
19
25
1.99
15338--15437
29
3.4
29
84
5
130
46
9
19
26
1.79
15325--15431
29
3.6
30
82
8
114
44
9
21
24
1.81
17498--17528
15
2.1
15
93
0
53
48
0
3
48
1.17
17816--17856
2
20.5
2
84
0
55
43
0
7
48
1.30
21432--21490
17
3.6
16
72
9
57
59
25
1
13
1.44
21355--21490
49
2.8
50
81
3
150
55
22
3
17
1.57
22910--22953
18
2.4
18
92
0
70
13
20
18
47
1.82
25434--25542
16
6.9
15
73
11
92
16
2
27
53
1.57
25438--25522
31
2.7
31
89
3
118
15
2
27
55
1.52
26618--26697
41
1.9
41
82
2
97
71
5
6
17
1.25
26625--26755
46
2.9
43
80
8
129
67
5
6
19
1.33
28498--28784
84
3.4
83
82
5
283
24
21
23
30
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28947--30567
105
15.4
105
95
0
2553
23
18
24
33
1.97
34151--34178
12
2.3
12
100
0
56
64
0
0
35
0.94
34272--34384
44
2.5
44
84
7
138
69
6
7
16
1.31
34294--34384
45
2.0
45
89
2
139
69
6
6
17
1.33
34307--34402
44
2.2
44
85
9
124
66
4
7
21
1.34
36285--36322
2
19.0
2
100
0
76
50
0
0
50
1.00
36773--37038
3
83.3
3
66
17
92
35
4
2
57
1.33
36790--36907
13
9.4
13
71
14
52
38
3
0
57
1.21
36789--36885
16
6.4
16
75
15
82
38
2
0
59
1.09
36789--37037
19
12.5
19
65
18
62
36
4
2
57
1.32
36977--37020
22
2.0
23
90
4
72
38
2
2
56
1.24
36978--37036
13
4.9
12
78
15
52
35
3
3
57
1.32
42805--42831
11
2.5
11
100
0
54
25
0
0
74
0.83
51590--51616
14
1.9
14
100
0
54
37
14
14
33
1.88
56411--56518
55
2.0
55
83
0
135
52
8
8
30
1.61
60218--60265
24
2.0
24
87
0
69
45
0
8
45
1.33
60243--60288
20
2.3
20
85
7
58
45
0
2
52
1.13
60352--60379
2
14.0
2
100
0
56
50
0
0
50
1.00
67417--67496
15
5.4
15
83
3
99
38
7
17
36
1.78
67409--67496
45
2.0
44
86
2
122
40
6
18
34
1.77
67430--67496
30
2.3
30
92
2
118
38
5
19
35
1.76
67479--67530
20
2.5
21
93
6
88
40
11
15
32
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67662--67828
88
1.9
85
82
10
203
45
0
4
49
1.23
67874--68001
28
4.3
30
75
15
108
52
0
0
46
1.11
67952--67995
22
2.0
23
86
4
63
54
0
0
45
0.99
67957--68017
22
2.8
22
73
14
54
54
0
0
45
1.00
67990--68020
14
2.1
15
94
5
55
48
0
0
51
1.00

Tables:   1

The End!