genome.fa.s711.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000711.1 Hibiscus syriacus cultivar Beakdansim tig00001381_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55467

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7689--7748	20	2.8	22	82	10	70	21	35	25	18	1.96
11945--11994	23	2.1	23	85	7	64	26	18	24	32	1.97
16443--16571	67	1.9	68	88	1	197	31	15	18	34	1.92
16536--17785	651	1.9	638	87	5	1802	42	14	11	32	1.80
18787--18815	2	14.5	2	100	0	58	48	0	0	51	1.00
18755--18823	37	1.9	35	85	5	93	44	4	1	49	1.31
18758--18836	37	2.2	36	79	6	88	43	5	1	50	1.32
18798--18934	25	6.3	22	67	20	65	45	10	2	40	1.51
18804--18854	22	2.3	22	80	12	59	43	7	1	47	1.43
18841--18947	25	4.5	25	72	14	100	48	11	1	38	1.50
27459--27492	6	5.7	6	100	0	68	29	0	17	52	1.45
34283--34307	2	12.5	2	100	0	50	48	0	0	52	1.00
35138--35181	19	2.4	19	88	7	65	38	0	0	61	0.96
36655--36769	43	2.7	42	82	14	130	50	0	2	46	1.21
36655--36769	2	61.0	2	75	17	104	50	0	2	46	1.21
36674--36821	64	2.3	66	83	13	184	47	1	3	47	1.27
36833--36875	14	2.9	14	86	6	59	13	4	0	81	0.84
36833--36875	5	8.8	5	82	12	54	13	4	0	81	0.84
37678--37746	36	1.9	36	96	0	129	42	20	23	14	1.89
38371--38412	18	2.3	18	91	0	66	26	14	33	26	1.94
45325--45361	19	2.0	18	89	5	56	35	10	0	54	1.36
46056--46086	16	1.9	16	93	0	53	19	12	19	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48235--48318	4	21.0	4	76	18	77	20	2	2	75	1.03
48211--48322	36	3.1	35	82	14	122	17	1	5	75	1.09
48235--48335	20	5.2	20	72	15	63	18	3	2	74	1.11
52112--52152	21	2.0	21	90	0	64	43	2	34	19	1.64

Tables:   1

The End!