genome.fa.s7110.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007110.1 Hibiscus syriacus cultivar Beakdansim tig00018583_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75353

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2553--2615	22	2.8	23	76	9	76	26	25	26	20	1.99
2631--2947	103	3.1	103	95	1	552	38	24	11	25	1.89
3421--3457	18	2.1	18	89	0	56	10	27	35	27	1.90
9626--9946	103	3.1	103	97	0	597	37	24	12	25	1.90
10489--10531	21	2.0	21	95	0	77	16	23	25	34	1.95
15611--15851	41	5.8	41	93	0	365	23	22	22	31	1.99
15935--15966	6	5.5	6	96	3	57	31	53	15	0	1.43
16806--16916	20	5.4	20	67	19	77	32	24	22	20	1.98
16762--16975	41	5.2	41	89	4	315	31	25	20	22	1.98
16762--16975	82	2.6	83	93	3	369	31	25	20	22	1.98
20906--20938	2	16.5	2	93	0	57	45	0	3	51	1.16
29213--29280	29	2.3	29	85	7	84	32	14	13	39	1.85
30417--30470	22	2.4	24	72	15	60	31	0	1	66	1.02
31464--31552	29	3.1	29	100	0	178	13	31	37	17	1.89
31574--31610	18	2.1	18	100	0	74	37	24	21	16	1.93
31592--31682	44	2.1	43	97	2	173	27	14	41	16	1.87
31642--31767	64	1.9	66	93	4	220	23	9	50	16	1.75
31657--31832	82	2.2	83	84	5	234	21	7	52	17	1.70
31719--31860	51	2.8	51	95	3	254	20	7	53	18	1.69
31655--31833	15	11.1	15	72	18	137	21	7	53	17	1.69
31933--31996	32	2.0	32	100	0	128	21	25	21	31	1.98
32309--32353	21	2.1	21	87	0	63	31	0	15	53	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32329--32431	27	4.0	26	70	18	81	34	0	10	53	1.42
32875--32930	16	3.3	16	74	13	58	39	0	10	50	1.37
32879--32908	15	1.9	16	93	6	53	43	0	13	43	1.43
33183--33241	26	2.3	25	75	18	66	47	8	3	40	1.51
36111--36464	26	14.3	26	77	16	301	43	2	10	43	1.52
36111--36401	123	2.3	123	93	2	494	44	2	9	43	1.51
36056--36375	98	3.3	98	85	7	384	43	2	10	43	1.51
36234--36464	98	2.4	98	97	1	428	42	2	10	44	1.51
36653--36685	17	1.9	17	93	0	57	36	6	12	45	1.66
38923--39004	34	2.6	32	81	12	89	48	14	0	36	1.44
39045--39135	45	2.0	47	87	8	134	46	12	0	41	1.41
39338--39389	21	2.5	20	84	6	59	1	30	0	67	1.02
39338--39389	25	2.1	24	82	13	61	1	30	0	67	1.02
39455--39506	25	2.1	25	92	0	86	28	32	9	28	1.89
39627--39673	23	2.0	23	100	0	94	21	8	44	25	1.80
39660--39691	13	2.5	13	94	0	55	31	3	46	18	1.65
39693--39829	29	4.7	29	93	1	222	22	29	32	15	1.95
39841--40056	41	5.2	41	65	20	142	17	31	27	23	1.96
39824--40059	84	2.8	84	100	0	472	17	32	26	23	1.96
39882--40028	43	3.5	43	68	17	135	18	31	27	21	1.97
40035--40147	35	3.2	35	100	0	226	19	20	33	26	1.96
42731--42772	16	2.6	16	96	0	75	33	16	23	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48565--48626	31	2.0	31	87	0	88	25	24	14	35	1.93
51030--51093	31	2.1	31	87	0	92	23	28	14	34	1.93
52184--52228	3	14.7	3	90	4	72	33	0	0	66	0.92
53525--53576	11	4.7	11	81	13	63	25	1	1	71	1.07
53535--53583	22	2.2	22	89	7	73	26	4	2	67	1.19
53525--53583	11	5.4	10	82	15	55	27	3	1	67	1.16
54443--54510	28	2.5	27	83	9	77	33	4	1	60	1.26
56037--56078	7	6.0	7	81	8	50	14	16	14	54	1.71
56037--56078	15	3.0	14	83	10	50	14	16	14	54	1.71
56137--56164	12	2.3	12	100	0	56	25	14	7	53	1.66
58936--59003	11	6.3	10	83	10	73	83	0	14	1	0.71
58936--59003	12	5.4	12	79	19	68	83	0	14	1	0.71
58939--58990	5	10.8	5	84	15	58	84	0	15	0	0.62
58939--59006	28	2.5	28	88	11	97	82	0	16	1	0.75
61161--61380	114	1.9	114	93	0	377	34	14	19	31	1.92
63924--64000	22	3.5	22	96	0	145	33	11	14	40	1.82
65621--65654	17	2.1	16	88	5	50	14	8	0	76	1.01

Tables:   1

The End!