genome.fa.s7111.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007111.1 Hibiscus syriacus cultivar Beakdansim tig00018584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137806

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183--514	46	7.4	46	81	4	392	24	20	10	44	1.83
144--510	91	4.1	91	80	10	394	23	20	11	44	1.84
385--496	20	5.0	20	68	23	71	23	24	10	41	1.85
4054--4138	24	3.5	24	88	0	107	55	14	9	21	1.67
8404--8682	150	1.9	149	80	8	334	37	31	11	20	1.87
8700--8826	24	5.5	24	80	12	133	55	15	11	18	1.69
11012--11072	10	5.9	10	77	7	59	22	31	29	16	1.96
13319--13444	24	5.2	24	82	0	99	54	12	9	23	1.66
13316--13434	48	2.5	48	80	0	130	53	13	9	23	1.68
40310--40499	37	5.3	36	85	5	242	42	5	10	41	1.63
40467--40522	23	2.4	23	88	5	78	41	7	14	37	1.73
40310--40500	72	2.6	72	90	0	301	42	5	10	40	1.64
40430--40556	58	2.2	60	84	5	161	44	3	10	41	1.57
40640--40704	9	6.8	9	80	17	69	33	0	0	66	0.92
40640--40704	20	3.4	18	82	16	69	33	0	0	66	0.92
54049--54113	23	2.8	23	83	6	78	44	4	10	40	1.60
54189--54262	12	6.2	12	73	21	50	32	0	1	66	1.00
54189--54262	25	3.1	24	75	15	73	32	0	1	66	1.00
58732--58821	24	3.8	23	85	10	110	25	16	20	37	1.93
59953--60046	23	4.1	23	88	0	134	34	24	25	15	1.95
59953--60046	46	2.0	46	91	0	152	34	24	25	15	1.95
62360--62406	13	3.6	13	77	8	51	19	6	0	74	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62947--62977	14	2.3	14	94	5	55	77	0	22	0	0.77
64517--64872	131	2.7	131	87	0	489	32	8	17	40	1.81
67385--67430	17	2.5	19	72	10	51	50	0	2	47	1.13
72769--72828	25	2.4	25	81	10	70	75	0	10	15	1.05
72791--72833	22	1.9	22	86	13	61	79	0	6	13	0.93
72839--72881	2	21.5	2	95	0	77	51	2	0	46	1.13
72932--72999	29	2.3	30	77	5	77	72	7	0	20	1.09
73133--73186	19	2.8	19	78	13	65	61	0	5	33	1.19
73717--73809	36	2.6	36	86	8	109	30	10	16	43	1.82
74508--75565	106	10.0	106	90	1	1583	22	18	24	33	1.97
74508--75565	423	2.5	424	91	1	1700	22	18	24	33	1.97
77157--77228	8	8.8	8	77	17	67	0	15	4	80	0.86
77134--77222	39	2.3	39	78	12	96	3	13	3	79	0.98
77157--77225	17	4.1	17	76	22	74	0	14	4	81	0.84
77161--77225	31	2.0	33	85	11	91	0	13	4	81	0.84
77158--77220	22	3.0	21	76	17	67	0	15	3	80	0.83
86566--86626	23	2.8	21	80	7	59	26	36	22	14	1.93
88572--88616	17	2.6	17	85	3	63	11	0	31	57	1.33
89205--89412	77	2.7	75	86	5	269	23	33	24	19	1.97
91358--91429	18	3.8	18	70	22	58	76	0	8	15	1.01
91361--91443	35	2.3	37	76	21	86	74	0	8	16	1.05
91731--91774	2	23.0	2	81	9	56	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91673--91781	55	2.0	54	82	8	132	57	3	2	35	1.31
91745--91837	21	4.3	21	67	22	59	62	2	2	33	1.19
92317--92405	37	2.4	37	88	0	124	32	10	15	41	1.81
93884--93957	38	2.0	38	91	2	123	37	35	10	16	1.83
93914--94032	62	1.9	61	86	6	168	41	31	11	15	1.84
111104--111172	21	3.5	20	72	20	65	52	0	7	40	1.29
111134--111266	48	2.8	48	80	13	125	45	0	10	43	1.44
111338--111412	3	25.0	3	91	5	125	32	1	0	66	1.00
112213--112316	33	3.2	33	95	1	183	43	17	7	31	1.77
112311--112352	21	2.0	21	95	0	75	47	7	14	30	1.71
114716--114740	13	1.9	13	100	0	50	48	16	16	20	1.82
116383--116428	18	2.6	18	100	0	92	30	17	4	47	1.67

Tables:   1

The End!