genome.fa.s7112.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007112.1 Hibiscus syriacus cultivar Beakdansim tig00018585_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83161

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4489--4534	24	1.9	24	86	0	65	13	13	13	60	1.59
4745--4785	3	14.0	3	89	5	66	31	2	0	65	1.05
4793--4825	17	2.0	17	94	5	59	54	24	0	21	1.45
6002--6073	22	3.3	22	74	16	78	29	4	2	63	1.27
6010--6076	11	6.3	11	75	16	61	28	2	1	67	1.14
6091--6169	27	3.0	26	87	3	88	43	0	1	55	1.07
6089--6142	2	27.5	2	96	3	101	48	0	0	51	1.00
6518--6559	23	1.9	21	85	9	57	47	2	0	50	1.14
7060--7114	24	2.3	24	78	9	60	27	7	0	65	1.19
15879--16261	73	5.2	73	94	0	649	27	20	20	30	1.98
16412--16458	3	15.7	3	90	0	76	34	4	0	61	1.15
16850--16882	14	2.4	14	90	5	50	81	0	15	3	0.80
17679--17772	43	2.2	41	87	11	134	27	5	3	63	1.31
17717--17764	20	2.4	21	82	10	64	27	4	2	66	1.21
17712--17772	32	1.9	32	86	3	88	27	3	1	67	1.16
18181--18222	23	1.9	21	85	9	57	47	4	0	47	1.23
27062--27099	18	2.1	18	95	0	67	42	7	13	36	1.73
31223--31251	14	2.0	15	93	6	51	34	0	3	62	1.12
32465--32523	15	4.0	15	78	10	68	44	1	1	52	1.21
32470--32523	14	3.8	14	78	11	65	42	1	1	53	1.22
32477--32533	28	2.0	29	86	10	82	45	3	3	47	1.37
32567--32608	14	2.9	15	85	7	59	57	0	4	38	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34998--35217	71	3.1	71	61	22	163	25	10	12	52	1.70
34987--35265	141	2.0	141	99	0	549	25	10	12	51	1.71
43047--43377	20	16.5	20	87	3	452	33	26	19	21	1.96
44059--44105	24	2.0	24	87	8	69	25	14	21	38	1.92
44280--44304	12	2.1	12	100	0	50	72	0	28	0	0.86
46577--46874	19	17.4	19	77	20	304	46	18	21	13	1.82
46577--46896	33	9.5	33	77	18	201	46	18	21	13	1.83
46605--46874	52	5.2	52	89	8	396	47	17	21	13	1.82
46663--46896	84	2.8	82	87	7	330	46	18	21	13	1.83
46903--47004	19	5.6	19	85	12	151	14	23	17	44	1.86
47111--47147	14	2.6	14	91	0	65	45	21	0	32	1.52
49097--49189	33	2.8	33	91	0	159	47	20	20	11	1.81
49116--49172	14	3.7	14	72	20	51	45	21	21	12	1.83
49060--49194	19	7.6	19	75	16	119	45	22	19	11	1.83
49190--49318	19	7.3	19	75	17	125	8	17	28	45	1.77
49190--49281	33	2.8	33	93	3	150	7	18	28	45	1.76
49362--49738	92	4.1	93	96	3	701	46	18	12	22	1.83
51360--51449	14	5.7	14	74	23	81	42	23	25	8	1.83
51352--51466	33	3.5	33	95	0	212	45	20	24	9	1.81
51359--51471	19	6.8	18	72	23	88	43	22	24	9	1.83
51489--51543	14	3.6	14	73	21	56	9	25	23	41	1.83
51472--51543	33	2.2	33	94	0	126	8	22	25	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51484--51565	33	2.5	33	89	2	119	9	25	21	42	1.84
51496--51584	20	4.8	20	72	19	75	12	24	19	43	1.85
51663--51733	33	2.2	33	92	0	115	47	18	22	11	1.80
51915--51969	22	2.5	22	81	0	74	20	16	40	23	1.91
52112--52304	20	9.6	20	82	5	219	19	19	25	35	1.95
52112--52304	60	3.2	60	83	0	251	19	19	25	35	1.95
52360--52411	20	2.6	20	96	0	95	21	13	26	38	1.90
53148--53174	4	6.8	4	100	0	54	25	0	0	74	0.83
58819--60037	246	5.0	244	86	3	1670	29	22	18	29	1.98
61597--61640	21	2.1	21	84	12	56	18	13	0	68	1.22
62914--63010	42	2.3	42	83	0	122	27	14	20	37	1.92
63370--63428	21	2.8	21	94	0	100	50	22	6	20	1.71
69993--70101	42	2.6	42	81	7	123	27	22	19	30	1.98
70249--70360	42	2.7	42	81	5	138	25	25	20	28	1.99
69481--70521	255	4.1	254	88	3	1536	33	17	16	32	1.93
70795--70830	3	12.0	3	100	0	72	33	0	0	66	0.92
71327--71399	31	2.4	30	93	4	121	35	8	32	23	1.84
72449--72491	2	22.0	2	95	4	79	48	0	0	51	1.00
73960--73993	14	2.4	14	90	0	50	41	11	0	47	1.40
76755--76813	11	5.4	10	80	15	55	67	1	3	27	1.16
76755--76813	22	2.7	22	84	5	75	67	1	3	27	1.16
78428--78832	111	3.7	112	86	5	581	30	19	11	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78428--78853	222	1.9	222	90	3	680	30	20	12	37	1.89
78429--78877	111	4.1	109	80	9	396	31	19	12	36	1.89
78857--79075	75	2.9	75	93	4	372	35	20	20	23	1.96
79807--79840	17	2.1	16	88	5	50	76	0	8	14	1.01

Tables:   1

The End!