Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007114.1 Hibiscus syriacus cultivar Beakdansim tig00018592_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98494

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
171--246
22
3.1
24
74
20
77
57
15
11
14
1.65
7788--7867
40
2.0
40
100
0
160
50
7
12
30
1.68
11501--11532
16
2.0
16
93
0
55
71
0
0
28
0.86
12683--12795
60
1.9
60
85
3
156
35
15
11
37
1.84
17326--17386
24
2.5
24
86
5
79
18
14
11
55
1.68
25192--25236
20
2.5
18
80
19
58
46
11
20
22
1.81
25377--25446
37
1.9
37
88
2
106
48
2
0
48
1.16
32661--32704
2
22.0
2
100
0
88
50
0
0
50
1.00
32736--32843
39
2.8
39
81
13
141
35
20
0
44
1.52
34245--34284
21
1.9
21
85
10
55
65
15
0
20
1.28
36632--36666
17
2.1
17
100
0
70
22
5
37
34
1.78
37999--38031
2
16.5
2
100
0
66
48
0
0
51
1.00
39830--39937
39
2.8
39
79
13
132
34
20
0
44
1.58
47782--47819
2
19.0
2
100
0
76
50
0
0
50
1.00
52822--52866
3
15.0
3
100
0
90
33
0
0
66
0.92
53102--53135
15
2.1
16
89
10
52
44
0
0
55
0.99
54142--54224
40
2.1
40
93
0
139
16
20
4
57
1.57
54737--54763
3
9.0
3
100
0
54
33
0
0
66
0.92
55712--55741
15
2.0
15
100
0
60
66
0
0
33
0.92
57798--57856
21
2.8
20
87
7
82
33
22
25
18
1.96
62419--62449
16
1.9
16
93
0
53
41
25
6
25
1.79
63819--64032
21
10.2
21
89
0
293
38
10
48
2
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63819--64044
42
5.5
42
90
1
332
39
10
48
2
1.49
63819--64032
63
3.4
63
92
0
338
38
10
48
2
1.51
65573--65622
15
3.3
15
91
0
82
28
32
22
18
1.97
72285--72328
15
2.6
17
79
17
56
25
36
25
13
1.92
72297--72331
15
2.3
15
100
0
70
28
34
22
14
1.93
84712--84751
20
2.0
20
100
0
80
30
30
5
35
1.79
87757--87808
26
2.0
24
85
10
68
13
11
30
44
1.79
87764--87818
26
2.1
27
82
3
67
14
12
21
50
1.76
91645--91698
20
2.6
21
85
5
74
24
18
18
38
1.93

Tables:   1

The End!