Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007115.1 Hibiscus syriacus cultivar Beakdansim tig00018600_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 120531
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:4881 original size:21 final size:20
Alignment explanation
Indices: 4857--4920 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 20
4847 AACTTTGAAA
4857 AAATAGTTTTCAAAGTTTGGT
1 AAAT-GTTTTCAAAGTTTGGT
*
4878 AAATG-TTTC----TTT-GA
1 AAATGTTTTCAAAGTTTGGT
4892 AAATGGTTTTCAAAGTTTGGT
1 AAAT-GTTTTCAAAGTTTGGT
4913 AAATGTTT
1 AAATGTTT
4921 CTTTGAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 15
0.67 0.04 0.29
Matches are distributed among these distances:
14 5 0.15
15 4 0.12
16 4 0.12
19 4 0.12
20 8 0.24
21 9 0.26
ACGTcount: A:0.31, C:0.05, G:0.19, T:0.45
Consensus pattern (20 bp):
AAATGTTTTCAAAGTTTGGT
Found at i:4895 original size:35 final size:36
Alignment explanation
Indices: 4849--4955 Score: 162
Period size: 35 Copynumber: 2.9 Consensus size: 36
4839 TGGTAACCAA
4849 CTTTGAAAAAATAGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATAGTTTTCAAAGTTTGGTAAATGTTT
*
4886 CTTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATAGTTTTCAAAGTTTGGTAAATGTTT
* *
4921 CTTTGAAAAATAATTTTTCAAAGTTTGGTAGATGT
1 CTTTGAAAAAT-AGTTTTCAAAGTTTGGTAAATGT
4956 GTTGAAAAAT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
35 34 0.53
36 5 0.08
37 25 0.39
ACGTcount: A:0.33, C:0.06, G:0.18, T:0.44
Consensus pattern (36 bp):
CTTTGAAAAATAGTTTTCAAAGTTTGGTAAATGTTT
Found at i:5391 original size:16 final size:17
Alignment explanation
Indices: 5370--5401 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
5360 TTACTATTCA
5370 CGTGAATAGT-AAATTT
1 CGTGAATAGTGAAATTT
5386 CGTGAATAGTGAAATT
1 CGTGAATAGTGAAATT
5402 CGGTCGGCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.34
Consensus pattern (17 bp):
CGTGAATAGTGAAATTT
Found at i:9452 original size:21 final size:21
Alignment explanation
Indices: 9428--9488 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
9418 AACTTTGAAA
9428 AAATGATTTTCAAAGTTTGGT
1 AAATGATTTTCAAAGTTTGGT
*
9449 AAATG--TTTC----TTT-GA
1 AAATGATTTTCAAAGTTTGGT
9463 AAATGATTTTCAAAGTTTGGT
1 AAATGATTTTCAAAGTTTGGT
9484 AAATG
1 AAATG
9489 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 6 0.19
15 3 0.10
16 4 0.13
19 4 0.13
20 3 0.10
21 11 0.35
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (21 bp):
AAATGATTTTCAAAGTTTGGT
Found at i:9466 original size:35 final size:36
Alignment explanation
Indices: 9420--9541 Score: 185
Period size: 35 Copynumber: 3.4 Consensus size: 36
9410 TAGTAACCAA
9420 CTTTGAAAAAATGATTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGATTTTCAAAGTTTGGTAAATGTTT
9457 CTTTG-AAAATGATTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGATTTTCAAAGTTTGGTAAATGTTT
* *
9492 CTTTGAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAAT-GATTTTCAAAGTTTGGTAAATGTTT
*
9529 -GTTGAAAAATGAT
1 CTTTGAAAAATGAT
9542 AATGGGATAA
Statistics
Matches: 79, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
35 37 0.47
36 14 0.18
37 28 0.35
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (36 bp):
CTTTGAAAAATGATTTTCAAAGTTTGGTAAATGTTT
Found at i:11275 original size:2 final size:2
Alignment explanation
Indices: 11268--11297 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
11258 ATTTACATAA
11268 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11298 TAAAAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23022 original size:65 final size:64
Alignment explanation
Indices: 22916--23040 Score: 164
Period size: 65 Copynumber: 1.9 Consensus size: 64
22906 GTACTAAGAG
*
22916 TGCATTCGATGTTTTAAAATAGCCAGAGTGCATCGATGCATGGCT-GGTGCATCGATGCATCAAA
1 TGCATTCGATGTTTTAAAATAGCCACAGTGCATCGATGCATGG-TAGGTGCATCGATGCATCAAA
* * * *
22980 TGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGGTGCATGGTATGTGCATCGATGCAT
1 TGCATTCGATGTTTT-A-AAATAGCCACAGTGCATCGATGCATGGTAGGTGCATCGATGCAT
23041 GGATTGGTGC
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
64 16 0.30
65 34 0.64
66 3 0.06
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (64 bp):
TGCATTCGATGTTTTAAAATAGCCACAGTGCATCGATGCATGGTAGGTGCATCGATGCATCAAA
Found at i:23032 original size:19 final size:20
Alignment explanation
Indices: 23008--23060 Score: 74
Period size: 19 Copynumber: 2.7 Consensus size: 20
22998 AAAATCCTCA
23008 GTGCATCGGTGCATGG-TAT-
1 GTGCATCGGTGCATGGAT-TG
*
23027 GTGCATCGATGCATGGATTG
1 GTGCATCGGTGCATGGATTG
23047 GTGCATCGGTGCAT
1 GTGCATCGGTGCAT
23061 CACTCTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.17, C:0.17, G:0.36, T:0.30
Consensus pattern (20 bp):
GTGCATCGGTGCATGGATTG
Found at i:24374 original size:9 final size:8
Alignment explanation
Indices: 24345--24423 Score: 65
Period size: 9 Copynumber: 9.4 Consensus size: 8
24335 AACAAAATGC
24345 TAAT-AAA
1 TAATAAAA
24352 TAA-AAAA
1 TAATAAAA
24359 TGAATAAAA
1 T-AATAAAA
24368 TATATAAAA
1 TA-ATAAAA
24377 TAATAATAA
1 TAATAA-AA
24386 TAATAATAA
1 TAATAA-AA
24395 TGAA-AGAAA
1 T-AATA-AAA
24404 TAATAAAA
1 TAATAAAA
*
24412 AAATAATAA
1 TAATAA-AA
24421 TAA
1 TAA
24424 AAGGTTAAGT
Statistics
Matches: 61, Mismatches: 2, Indels: 16
0.77 0.03 0.20
Matches are distributed among these distances:
7 7 0.11
8 17 0.28
9 34 0.56
10 3 0.05
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (8 bp):
TAATAAAA
Found at i:24383 original size:3 final size:3
Alignment explanation
Indices: 24361--24423 Score: 55
Period size: 3 Copynumber: 21.7 Consensus size: 3
24351 ATAAAAAATG
24361 AAT AA- AAT ATAT AA- AAT AAT AAT AAT AAT AAT AAT GAA- AGA- AAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT -AAT A-AT AAT
*
24405 AAT AA- AAA AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
24424 AAGGTTAAGT
Statistics
Matches: 52, Mismatches: 1, Indels: 14
0.78 0.01 0.21
Matches are distributed among these distances:
2 8 0.15
3 39 0.75
4 5 0.10
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:24384 original size:35 final size:34
Alignment explanation
Indices: 24345--24425 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 34
24335 AACAAAATGC
*
24345 TAATAAATAAAA-AATGAATA-AAATATATAAAATAA
1 TAAT-AATAAAATAATGAA-AGAAATA-ATAAAAAAA
24380 TAATAATAATAATAATGAAAGAAATAATAAAAAAA
1 TAATAATAA-AATAATGAAAGAAATAATAAAAAAA
24415 TAATAATAAAA
1 TAATAATAAAA
24426 GGTTAAGTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
34 7 0.17
35 24 0.57
36 11 0.26
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (34 bp):
TAATAATAAAATAATGAAAGAAATAATAAAAAAA
Found at i:24465 original size:13 final size:14
Alignment explanation
Indices: 24447--24475 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
24437 AAAAATATTT
24447 AAAAATAAA-ATAA
1 AAAAATAAAGATAA
24460 AAAAATAAAGATAA
1 AAAAATAAAGATAA
24474 AA
1 AA
24476 CTTAGGATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (14 bp):
AAAAATAAAGATAA
Found at i:25742 original size:19 final size:19
Alignment explanation
Indices: 25710--25758 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
25700 CCTGGAGAAA
* * *
25710 AAAATATATGAAATTAAAT
1 AAAATAAATAAAATAAAAT
* *
25729 TAAATTAATAAAATAAAAT
1 AAAATAAATAAAATAAAAT
25748 AAAATAAATAA
1 AAAATAAATAA
25759 TATGATATAA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAATAAATAAAATAAAAT
Found at i:25768 original size:19 final size:18
Alignment explanation
Indices: 25746--25785 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
25736 ATAAAATAAA
25746 ATAAAATAAATAATATGAT
1 ATAAAATAAATAATAT-AT
* *
25765 ATAAACTATATAATATAT
1 ATAAAATAAATAATATAT
25783 ATA
1 ATA
25786 TTTCAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (18 bp):
ATAAAATAAATAATATAT
Found at i:25884 original size:37 final size:37
Alignment explanation
Indices: 25767--26078 Score: 247
Period size: 38 Copynumber: 8.4 Consensus size: 37
25757 AATATGATAT
* *
25767 AAACTATATAATATAT-A-TATTTCAAAAATACGTTTTAGA
1 AAACTATATATTATATAAGT-TTTCAAAAAT--GTTTT-TA
* *
25806 AAACTATATATTACAT-AGTTTTC-AAAACG-TTTT-
1 AAACTATATATTATATAAGTTTTCAAAAATGTTTTTA
25839 AAA--A-ATATTATATAAGTTTTCAAAAATGTTTTTA
1 AAACTATATATTATATAAGTTTTCAAAAATGTTTTTA
*
25873 AAACTATATATTATATAA-TTTCACAAAAAATGTTTTTTA
1 AAACTATATATTATATAAGTTT-TC-AAAAATG-TTTTTA
* * *
25912 AAACTATATACTATATATGTTTTC-AAAATGTTTTAA
1 AAACTATATATTATATAAGTTTTCAAAAATGTTTTTA
* *
25948 AAACTATATAATATATAAACGTTTTC-AAAATGTTTTCA
1 AAACTATATATTATAT-AA-GTTTTCAAAAATGTTTTTA
* *
25986 AAACTATATATTATATATA-TTTT-AAAAATATTTTCAA
1 AAACTATATATTATATA-AGTTTTCAAAAATGTTTT-TA
* * * *
26023 AAACTATATAATATATAAATTTTCGAAAATCATTTTCTGA
1 AAACTATATATTATATAAGTTTTCAAAAAT-GTTTT-T-A
*
26063 AAATTATATATTATAT
1 AAACTATATATTATAT
26079 TTTGTCAAAA
Statistics
Matches: 230, Mismatches: 22, Indels: 41
0.78 0.08 0.14
Matches are distributed among these distances:
30 8 0.03
31 8 0.03
32 5 0.02
33 7 0.03
34 3 0.01
35 3 0.01
36 39 0.17
37 41 0.18
38 49 0.21
39 48 0.21
40 19 0.08
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.43
Consensus pattern (37 bp):
AAACTATATATTATATAAGTTTTCAAAAATGTTTTTA
Found at i:26041 original size:75 final size:73
Alignment explanation
Indices: 25767--26078 Score: 266
Period size: 75 Copynumber: 4.2 Consensus size: 73
25757 AATATGATAT
* * * * *
25767 AAACTATATAATATATATATTTCAAAAATACGTTTTAGAAAACTATATATTACAT-AGTTTTC-A
1 AAACTATATATTATATATATTTTAAAAATA--TTTTA-AAAACTATATAATATATAAATTTTCAA
*
25830 AAACGTTTT--
63 AAATGTTTTCA
* * * *
25839 AAA--A-ATATTATATA-AGTTTTCAAAAATGTTTTTAAAACTATATATTATAT-AATTTCACAA
1 AAACTATATATTATATATA-TTTT-AAAAATATTTTAAAAACTATATAATATATAAATTT-TC-A
*
25899 AAAATGTTTTTTA
62 AAAATG-TTTTCA
* * * *
25912 AAACTATATACTATATATGTTTTCAAAATGTTTTAAAAACTATATAATATATAAACGTTTTC-AA
1 AAACTATATATTATATATATTTTAAAAATATTTTAAAAACTATATAATATATAAA--TTTTCAAA
25976 AATGTTTTCA
64 AATGTTTTCA
*
25986 AAACTATATATTATATATATTTTAAAAATATTTTCAAAAACTATATAATATATAAATTTTCGAAA
1 AAACTATATATTATATATATTTTAAAAATATTTT-AAAAACTATATAATATATAAATTTTCAAAA
*
26051 ATCATTTTCTGA
65 AT-GTTTTC--A
*
26063 AAATTATATATTATAT
1 AAACTATATATTATAT
26079 TTTGTCAAAA
Statistics
Matches: 199, Mismatches: 21, Indels: 35
0.78 0.08 0.14
Matches are distributed among these distances:
67 20 0.10
68 6 0.03
69 12 0.06
70 12 0.06
71 4 0.02
72 3 0.02
73 8 0.04
74 40 0.20
75 59 0.30
76 15 0.08
77 17 0.09
78 3 0.02
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.43
Consensus pattern (73 bp):
AAACTATATATTATATATATTTTAAAAATATTTTAAAAACTATATAATATATAAATTTTCAAAAA
TGTTTTCA
Found at i:26782 original size:84 final size:83
Alignment explanation
Indices: 26716--27770 Score: 886
Period size: 84 Copynumber: 12.7 Consensus size: 83
26706 GAATATAATT
* * * *
26716 GAACTCGGAGGTCTTCGGTTGGCAGATAACCCTTCTCAACTTAAGCTATACTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCAACTTAAGTTATGCTGCAAATGATGTGC
* *
26781 CTTGGAGCTAAGCGTAGTC
66 CTT-AAGCTGAGCGTAGTC
* * ** * * * *
26800 GAACTTGAAGGTCTTTAG-TAACAGATAACCCTTCT-AGCCTTGAGTTATGCTGTAAATGATATG
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCA-ACTTAAGTTATGCTGCAAATGATGTG
* * * *
26863 CCCTCGAAGTTGAGTGTAATC
65 -CCT-TAAGCTGAGCGTAGTC
* ** * * *
26884 AAACTCGGGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGTTATACTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCAACTTAAGTTATGCTGCAAATGATGTGC
**
26945 CTGGGAGCTGAGCGTAGTC
66 CT-TAAGCTGAGCGTAGTC
* * * ** ** *
26964 GAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCT-AGCCTTGAGTTATATTGTGAATGATATG
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCA-ACTTAAGTTATGCTGCAAATGATGTG
* * * *
27027 CCCTCCAAGCTGAGAGTAATT
65 -CCT-TAAGCTGAGCGTAGTC
* * * * *
27048 GAACTCGAGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCAACTTAAGTTATGCTGCAAATGATGTGC
27109 CTTAGAGCTGAGCGTAGTC
66 CTTA-AGCTGAGCGTAGTC
** * * *
27128 GAACTCGAAGGTCTTTTGG-TCACAGATAACCCTTCT-AGCCTTGAGTTATGCTGTAAATGATGT
1 GAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTCA-ACTTAAGTTATGCTGCAAATGATGT
* * *
27191 GCCCTCGAAGCTGAGTGTAATC
64 G-CCT-TAAGCTGAGCGTAGTC
** * * *
27213 GAACTCGGGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCAACTTAAGTTATGCTGCAAATGATGTGC
*
27274 CGTTGAGCTGAGCGTAGTC
66 C-TTAAGCTGAGCGTAGTC
* * * * *
27293 GAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCT-AGACTTAAGTTGTGCTGCAAATGATATG
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCA-ACTTAAGTTATGCTGCAAATGATGTG
*
27357 CCTTGGAGCTGAGCGTAGTC
65 CCTT-AAGCTGAGCGTAGTC
* *
27377 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAATTTATGCTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCAACTTAAGTTATGCTGCAAATGATGTGC
*
27442 CGTTGAGCTGAGCGTAGTC
66 C-TTAAGCTGAGCGTAGTC
* * * * * **
27461 GAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCT-AGACTTAAGTTGTACTGCAAATGACATG
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCA-ACTTAAGTTATGCTGCAAATGATGTG
*
27525 CCTTGGAGCTGAGCGTAGTC
65 CCTT-AAGCTGAGCGTAGTC
* *
27545 GAACTCGAAGGTCTTTGGTTGGCAGATAACTCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCAACTTAAGTTATGCTGCAAATGATGTG-
* * *
27610 CCTCGAAGCTGAGTGTAATC
65 CCT-TAAGCTGAGCGTAGTC
** * * *
27630 GAACTCGGGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCAACTTAAGTTATGCTGCAAATGATGTGC
*
27691 CGTTGAGCTGAGCGTAGTC
66 C-TTAAGCTGAGCGTAGTC
** * * *
27710 GAACTC-ACAGGTCTTTTGG-TCACAGATAACCCTTCT-AGCCTTGAGTTATGCTGTAAATGAT
1 GAACTCGA-AGGTC-TTTGGTTGGCAGATAACCCTTCTCA-ACTTAAGTTATGCTGCAAATGAT
27771 TTGTTTTTAA
Statistics
Matches: 772, Mismatches: 153, Indels: 92
0.76 0.15 0.09
Matches are distributed among these distances:
79 1 0.00
80 99 0.13
81 150 0.19
82 6 0.01
83 77 0.10
84 384 0.50
85 54 0.07
86 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (83 bp):
GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCAACTTAAGTTATGCTGCAAATGATGTGC
CTTAAGCTGAGCGTAGTC
Found at i:27252 original size:165 final size:163
Alignment explanation
Indices: 26734--27715 Score: 1112
Period size: 164 Copynumber: 6.0 Consensus size: 163
26724 AGGTCTTCGG
* *
26734 TTGGCAGATAACCCTTCTCAACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTAAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTT-GAGCTGAGCGTAGT
* * * * * *
26799 CGAACTTGAAGGTCTTTAGTAACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGC
65 CGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGC
* * * *
26864 CCTCGAAGTTGAGTGTAATCAAACTCGGGGGTCT
130 CCTCGAAGCTGAGCGTAATCGAACTCGAGGGTCT
* * *
26898 TTGGCAGATAGCCCTTCTCGACTTAAGTTATACTGCAAATGATGTGCCTGGGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCT-TGAGCTGAGCGTAGT
* * ** **
26963 CGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATATTGTGAATGATATGC
65 CGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGC
* * *
27028 CCTCCAAGCTGAGAGTAATTGAACTCGAGGGTCT
130 CCTCGAAGCTGAGCGTAATCGAACTCGAGGGTCT
*
27062 TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTAGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTT-GAGCTGAGCGTAGT
* * * * *
27127 CGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
65 CGAACTCGAAGGTC-TTTGGTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATG
* *
27192 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCT
129 CCCTCGAAGCTGAGCGTAATCGAACTCGAGGGTCT
* *
27227 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCC-TTGAGCTGAGCGTAGT
* * * * *
27292 CGAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATG
65 CGAACTCGAAGGTC-TTTGGTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATG
* * * *
27357 -CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
129 CCCTCGAAGCTGAGCGTAATCGAACTCGAGGGTC--T
** *
27393 GGTTGGCAGATAACCCTTCTCGACTTAATTTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTA
1 --TTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCC-TTGAGCTGAGCGTA
* * * * * * *
27458 GTCGAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGACTTAAGTTGTACTGCAAATGACA
63 GTCGAACTCGAAGGTC-TTTGGTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATA
* * * *
27523 TG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
127 TGCCCTCGAAGCTGAGCGTAATCGAACTCGAGGGTC--T
* * * * *
27561 GGTTGGCAGATAACTCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGT
1 --TTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTG-CCTTG-AGCTGAGCGT
* ** * * * *
27626 AATCGAACTCGGGGGTCTTT-G-G-CAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATG
62 AGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATA
* * *
27688 TGCCGTTG-AGCTGAGCGTAGTCGAACTC
127 TGCCCTCGAAGCTGAGCGTAATCGAACTC
27716 ACAGGTCTTT
Statistics
Matches: 739, Mismatches: 68, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
164 249 0.34
165 246 0.33
166 8 0.01
168 212 0.29
169 24 0.03
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (163 bp):
TTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGAGCTGAGCGTAGTC
GAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCC
CTCGAAGCTGAGCGTAATCGAACTCGAGGGTCT
Found at i:27613 original size:417 final size:413
Alignment explanation
Indices: 26716--27770 Score: 1278
Period size: 417 Copynumber: 2.5 Consensus size: 413
26706 GAATATAATT
* * * * *
26716 GAACTCGGAGGTCTTCGGTTGGCAGATAACCCTTCTCAACTTAAGCTATACTGCAAATGATGTG-
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
* * * * * * ** * * * * * *
26780 CCTTGGAGCTAAGCGTAGTCGAACTTGAAGGTCTTTAGTAACAGATAACCCTTCTAGCCTTGAGT
66 CCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTT-G--GCAGATAGCCCTTCTCGACTTAAGC
* * * * * * * * ***
26845 TATGCTGTAAATGATATGCCCTCGAAGTTGAGTGTAATCAAACTCGGGGGTC---T-TTGGCAGA
128 TATGCTGCAAATGATGTGCCGTTG-AGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGA
* * * *
26906 TAGCCCTTCTCGACTTAAGTTATACTGCAAATGATGTGCCTGGGAGCTGAGCGTAGTCGAACTCG
192 TAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCTGGGAGCTGAGCGTAGTCGAACTCG
* * * **
26971 AAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATATTGTGAATGATATGCCCTCCAAG
257 AAGGTCTTTGGTGACAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATATGCCCTCCAAG
* * * * * *
27036 CTGAGAGTAATTGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAA
322 CTGAGAGTAATCGAACTCAAAGGTCTTTGGCAGACAACCCTTCTAGACTTAAGCTATACTGCAAA
**
27101 TGATGTGCCTTAGAGCTGAGCGTAGTC
387 TGACATGCCTTAGAGCTGAGCGTAGTC
** * * * *
27128 GAACTCGAAGGTCTTTTGG-TCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
1 GAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
27192 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
65 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
*
27257 TGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGACAA
130 TGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGATAA
* *
27322 CCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
195 CCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCTGGGAGCTGAGCGTAGTCGAACTCGAAG
* * * * * * **
27387 GTCTTTGGTTGGCAGATAACCCTTCTCGACTTAATTTATGCTGCAAATGATGTGCCGT-TGAGCT
260 GTCTTTGG-TGACAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATATGCCCTCCAAGCT
* * * *
27451 GAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGACTTAAGTTGTACTGCA
324 GAGAGTAATCGAACTCAAAGGTC---T-TTGGCAGACAACCCTTCTAGACTTAAGCTATACTGCA
*
27516 AATGACATGCCTTGGAGCTGAGCGTAGTC
385 AATGACATGCCTTAGAGCTGAGCGTAGTC
*
27545 GAACTCGAAGGTCTTTGGTTGGCAGATAACTCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
27610 CCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
66 CCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
* * **
27675 GCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCACAGGTCTTTTGGTCACAGATAAC
131 GCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGATAAC
* * *
27740 CCTTCTAGCCTTGAGTTATGCTGTAAATGAT
196 CCTTCTAGACTTAAGTTATGCTGCAAATGAT
27771 TTGTTTTTAA
Statistics
Matches: 546, Mismatches: 85, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
409 20 0.04
410 39 0.07
412 50 0.09
413 131 0.24
414 38 0.07
416 6 0.01
417 262 0.48
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (413 bp):
GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
CCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
GCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGATAAC
CCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCTGGGAGCTGAGCGTAGTCGAACTCGAAGG
TCTTTGGTGACAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATATGCCCTCCAAGCTGA
GAGTAATCGAACTCAAAGGTCTTTGGCAGACAACCCTTCTAGACTTAAGCTATACTGCAAATGAC
ATGCCTTAGAGCTGAGCGTAGTC
Found at i:30840 original size:19 final size:20
Alignment explanation
Indices: 30816--30862 Score: 87
Period size: 19 Copynumber: 2.4 Consensus size: 20
30806 AGTTAATATG
30816 AATGCAAAGAAAATAAC-AA
1 AATGCAAAGAAAATAACAAA
30835 AATGCAAAGAAAATAACAAA
1 AATGCAAAGAAAATAACAAA
30855 AATGCAAA
1 AATGCAAA
30863 ATGTCTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.68, C:0.11, G:0.11, T:0.11
Consensus pattern (20 bp):
AATGCAAAGAAAATAACAAA
Found at i:32668 original size:9 final size:8
Alignment explanation
Indices: 32639--32714 Score: 54
Period size: 9 Copynumber: 9.4 Consensus size: 8
32629 AACAAAATGC
32639 TAAT-AAA
1 TAATAAAA
32646 TAA-AAAA
1 TAATAAAA
32653 TGAATAAAA
1 T-AATAAAA
32662 TATATAAAA
1 TA-ATAAAA
32671 TAAT--AA
1 TAATAAAA
32677 TAATAATAA
1 TAATAA-AA
32686 TGAA-AGAAA
1 T-AATA-AAA
32695 TAATAAAA
1 TAATAAAA
*
32703 AAATAATAA
1 TAATAA-AA
32712 TAA
1 TAA
32715 AAGGTTAAGT
Statistics
Matches: 56, Mismatches: 2, Indels: 20
0.72 0.03 0.26
Matches are distributed among these distances:
6 6 0.11
7 7 0.12
8 15 0.27
9 25 0.45
10 3 0.05
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (8 bp):
TAATAAAA
Found at i:32679 original size:11 final size:11
Alignment explanation
Indices: 32639--32716 Score: 74
Period size: 11 Copynumber: 7.0 Consensus size: 11
32629 AACAAAATGC
32639 TAATAAATAAAA
1 TAAT-AATAAAA
32651 -AATGAATAAAA
1 TAAT-AATAAAA
32662 T-AT-ATAAAA
1 TAATAATAAAA
32671 TAATAATAATAA
1 TAATAATAA-AA
32683 TAATGAA-AGAAA
1 TAAT-AATA-AAA
*
32695 TAATAAAAAAA
1 TAATAATAAAA
32706 TAATAATAAAA
1 TAATAATAAAA
32717 GGTTAAGTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
9 7 0.12
10 2 0.04
11 31 0.54
12 14 0.25
13 3 0.05
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:32701 original size:32 final size:32
Alignment explanation
Indices: 32639--32716 Score: 99
Period size: 32 Copynumber: 2.4 Consensus size: 32
32629 AACAAAATGC
32639 TAATAAATAA-AAAATGAATAAAATATATAAAA
1 TAAT-AATAATAAAATGAATAAAATATATAAAA
32671 TAATAATAATAATAATGAA-AGAAATA-ATAAAA
1 TAATAATAATAA-AATGAATA-AAATATATAAAA
*
32703 AAATAATAATAAAA
1 TAATAATAATAAAA
32717 GGTTAAGTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
31 7 0.17
32 24 0.57
33 11 0.26
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (32 bp):
TAATAATAATAAAATGAATAAAATATATAAAA
Found at i:32756 original size:13 final size:14
Alignment explanation
Indices: 32738--32766 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32728 AAAAATATTT
32738 AAAAATAAA-ATAA
1 AAAAATAAAGATAA
32751 AAAAATAAAGATAA
1 AAAAATAAAGATAA
32765 AA
1 AA
32767 CTTAGGATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (14 bp):
AAAAATAAAGATAA
Found at i:34038 original size:19 final size:19
Alignment explanation
Indices: 34001--34054 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
33991 GGACCTGGAG
* * *
34001 AAAAAAAAATATATGAAAT
1 AAAATAAAATAAATAAAAT
* * *
34020 TAAATTAAATTAATAAAAT
1 AAAATAAAATAAATAAAAT
34039 AAAATAAAATAAATAA
1 AAAATAAAATAAATAA
34055 TATGATATAA
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (19 bp):
AAAATAAAATAAATAAAAT
Found at i:34064 original size:19 final size:18
Alignment explanation
Indices: 34042--34081 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
34032 ATAAAATAAA
34042 ATAAAATAAATAATATGAT
1 ATAAAATAAATAATAT-AT
* *
34061 ATAAACTATATAATATAT
1 ATAAAATAAATAATATAT
34079 ATA
1 ATA
34082 TTTCAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (18 bp):
ATAAAATAAATAATATAT
Found at i:34106 original size:39 final size:36
Alignment explanation
Indices: 34063--34340 Score: 209
Period size: 39 Copynumber: 7.6 Consensus size: 36
34053 AATATGATAT
34063 AAACTATATAATATATATATTTCAAAAATACGTTTTAGA
1 AAACTATATAATATATATATTTC-AAAATA-GTTTTA-A
* * *
34102 AAACTATATATTACATAGT-TTTCAAAA-CGTTTTAA
1 AAACTATATAATATATA-TATTTCAAAATAGTTTTAA
* *
34137 AAA-TAT-T-ATATA-AGT-TTTCAAAATTGTTTTTA
1 AAACTATATAATATATA-TATTTCAAAATAGTTTTAA
* * *
34169 AAACTATATATTATATA-ATTTCACAAAAAATGTTTTTTA
1 AAACTATATAATATATATATTT--CAAAATA-G-TTTTAA
* *
34208 AAACTATATACTATATATGTTTTCAAAAT-GTTTTAA
1 AAACTATATAATATATAT-ATTTCAAAATAGTTTTAA
* *
34244 AAACTATATAATATATAAACGTTTTCAAAAT-GTTTTCA
1 AAACTATATAATATATATA---TTTCAAAATAGTTTTAA
* *
34282 AAACTATATATTATATATATTTTAAAAATA-TTTTCAA
1 AAACTATATAATATATATA-TTTCAAAATAGTTTT-AA
*
34319 AAACTATATAATATATAAATTT
1 AAACTATATAATATATATATTT
34341 TCGAAAATCA
Statistics
Matches: 197, Mismatches: 24, Indels: 39
0.76 0.09 0.15
Matches are distributed among these distances:
31 11 0.06
32 12 0.06
33 4 0.02
34 4 0.02
35 11 0.06
36 44 0.22
37 24 0.12
38 37 0.19
39 46 0.23
40 1 0.01
41 3 0.02
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.43
Consensus pattern (36 bp):
AAACTATATAATATATATATTTCAAAATAGTTTTAA
Found at i:34180 original size:37 final size:36
Alignment explanation
Indices: 34101--34374 Score: 240
Period size: 37 Copynumber: 7.5 Consensus size: 36
34091 TACGTTTTAG
* *
34101 AAAACTATATATTACAT-AGTTTTCAAAACG-TTTT
1 AAAACTATATATTATATAAGTTTTCAAAATGTTTTT
34135 -AAA--A-ATATTATATAAGTTTTCAAAATTGTTTTT
1 AAAACTATATATTATATAAGTTTTCAAAA-TGTTTTT
*
34168 AAAACTATATATTATATAA-TTTCACAAAAAATGTTTTTT
1 AAAACTATATATTATATAAGTTT-TC--AAAATG-TTTTT
* * *
34207 AAAACTATATACTATATATGTTTTCAAAATGTTTTA
1 AAAACTATATATTATATAAGTTTTCAAAATGTTTTT
* *
34243 AAAACTATATAATATATAAACGTTTTCAAAATGTTTTC
1 AAAACTATATATTATAT-AA-GTTTTCAAAATGTTTTT
* * *
34281 AAAACTATATATTATATATA-TTTTAAAAATATTTTCA
1 AAAACTATATATTATATA-AGTTTTCAAAATGTTTT-T
* * *
34318 AAAACTATATAATATATAAATTTTCGAAAATCATTTTCT
1 AAAACTATATATTATATAAGTTTTC-AAAAT-GTTTT-T
*
34357 GAAAATTATATATTATAT
1 -AAAACTATATATTATAT
34375 TTTGTCAAAA
Statistics
Matches: 201, Mismatches: 19, Indels: 34
0.79 0.07 0.13
Matches are distributed among these distances:
30 8 0.04
31 12 0.06
32 1 0.00
33 7 0.03
34 3 0.01
36 38 0.19
37 41 0.20
38 40 0.20
39 33 0.16
40 18 0.09
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (36 bp):
AAAACTATATATTATATAAGTTTTCAAAATGTTTTT
Found at i:43868 original size:29 final size:29
Alignment explanation
Indices: 43835--43918 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 29
43825 CTAAAATATA
43835 TAACTTTTAAAAATTACAATTTTAGTCC-C
1 TAACTTTTAAAAATTAC-ATTTTAGTCCAC
* * * *
43864 TAACTTTTCAAAGTTATACTTTAG-CCAC
1 TAACTTTTAAAAATTACATTTTAGTCCAC
* *
43892 TAAACTTTCAAAACTTACATTTTAGTC
1 T-AACTTTTAAAAATTACATTTTAGTC
43919 ACTGGTCAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
27 2 0.05
28 8 0.19
29 32 0.74
30 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.40
Consensus pattern (29 bp):
TAACTTTTAAAAATTACATTTTAGTCCAC
Found at i:46176 original size:28 final size:28
Alignment explanation
Indices: 46135--46201 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
46125 CACGACCACA
* *
46135 AATTTATCTAAATACGACTAAAACACCC
1 AATTCATCAAAATACGACTAAAACACCC
* *
46163 AATTCATCAAAATACGGCTGAAACACCC
1 AATTCATCAAAATACGACTAAAACACCC
*
46191 GATTCATCAAA
1 AATTCATCAAA
46202 TCCATAAATG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.45, C:0.25, G:0.07, T:0.22
Consensus pattern (28 bp):
AATTCATCAAAATACGACTAAAACACCC
Found at i:54156 original size:24 final size:24
Alignment explanation
Indices: 54129--54174 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
54119 AACGACGGAT
* *
54129 AAAACCCTAGTAGTGAGTAGATAG
1 AAAAACCTAATAGTGAGTAGATAG
*
54153 AAAAACCTAATAGTGGGTAGAT
1 AAAAACCTAATAGTGAGTAGAT
54175 TTTTTTATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAAAACCTAATAGTGAGTAGATAG
Found at i:56030 original size:14 final size:14
Alignment explanation
Indices: 56011--56042 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
56001 TTAAAAGATA
56011 AACGAACACAAATG
1 AACGAACACAAATG
*
56025 AACGAACATAAATG
1 AACGAACACAAATG
56039 AACG
1 AACG
56043 GATGTAAACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.56, C:0.19, G:0.16, T:0.09
Consensus pattern (14 bp):
AACGAACACAAATG
Found at i:56041 original size:10 final size:10
Alignment explanation
Indices: 56025--56103 Score: 68
Period size: 10 Copynumber: 7.2 Consensus size: 10
56015 AACACAAATG
56025 AACGAACATA
1 AACGAACATA
*
56035 AATGAACGGATGTA
1 AACGAAC--AT--A
56049 AACGAACATA
1 AACGAACATA
56059 AACGAACACAATA
1 AACG-A-AC-ATA
*
56072 AACGAAAATA
1 AACGAACATA
*
56082 AATGAACATA
1 AACGAACATA
56092 AACGAACATA
1 AACGAACATA
56102 AA
1 AA
56104 TGAAAATATA
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
10 33 0.59
11 2 0.04
12 7 0.12
13 7 0.12
14 7 0.12
ACGTcount: A:0.59, C:0.15, G:0.13, T:0.13
Consensus pattern (10 bp):
AACGAACATA
Found at i:56041 original size:24 final size:24
Alignment explanation
Indices: 56008--56103 Score: 85
Period size: 24 Copynumber: 4.2 Consensus size: 24
55998 CATTTAAAAG
*
56008 ATAAACGAACACAAATGAACGAAC
1 ATAAACGAACACAAATAAACGAAC
* ** **
56032 ATAAATGAACGGATGTAAACGAAC
1 ATAAACGAACACAAATAAACGAAC
*
56056 ATAAACGAACAC-AATAAACGAAA
1 ATAAACGAACACAAATAAACGAAC
*
56079 ATAAATG-A-AC--ATAAACGAAC
1 ATAAACGAACACAAATAAACGAAC
56099 ATAAA
1 ATAAA
56104 TGAAAATATA
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
20 14 0.24
21 2 0.03
22 1 0.02
23 14 0.24
24 27 0.47
ACGTcount: A:0.59, C:0.16, G:0.12, T:0.12
Consensus pattern (24 bp):
ATAAACGAACACAAATAAACGAAC
Found at i:56094 original size:20 final size:20
Alignment explanation
Indices: 56069--56107 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
56059 AACGAACACA
56069 ATAAACGAAAATAAATGAAC
1 ATAAACGAAAATAAATGAAC
*
56089 ATAAACGAACATAAATGAA
1 ATAAACGAAAATAAATGAA
56108 AATATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.64, C:0.10, G:0.10, T:0.15
Consensus pattern (20 bp):
ATAAACGAAAATAAATGAAC
Found at i:57295 original size:220 final size:220
Alignment explanation
Indices: 56913--57352 Score: 853
Period size: 220 Copynumber: 2.0 Consensus size: 220
56903 TTTACAAGAG
56913 AAAAATGAAATAAGAATGAAAAACTCTTCTCTTGTGTTTGATTGCTTGGATAGTTGTTCTTCTTT
1 AAAAATGAAATAAGAATGAAAAACTCTTCTCTTGTGTTTGATTGCTTGGATAGTTGTTCTTCTTT
**
56978 TTTTCTTCAAGTGTCCTTAGCTTGTATTTATAGCTTGGAATGTGTTTGATGTTGTATATAGCCAT
66 TTTTCTTCAAGTGTAATTAGCTTGTATTTATAGCTTGGAATGTGTTTGATGTTGTATATAGCCAT
*
57043 TGGGGATGTTTTGGAGCCGTTTGGGGATGATTTTTCTACTCAAAAAGGCTGCCCATAACATGGTG
131 TGGGGATGTTTTGGAGCCGTTTAGGGATGATTTTTCTACTCAAAAAGGCTGCCCATAACATGGTG
57108 CATCGGTGCACAATCATGGTGCATC
196 CATCGGTGCACAATCATGGTGCATC
57133 AAAAATGAAATAAGAATGAAAAACTCTTCTCTTGTGTTTGATTGCTTGGATAGTTGTTCTTCTTT
1 AAAAATGAAATAAGAATGAAAAACTCTTCTCTTGTGTTTGATTGCTTGGATAGTTGTTCTTCTTT
57198 TTTTCTTCAAGTGTAATTAGCTTGTATTTATAGCTTGGAATGTGTTTGATGTTGTATATAGCCAT
66 TTTTCTTCAAGTGTAATTAGCTTGTATTTATAGCTTGGAATGTGTTTGATGTTGTATATAGCCAT
57263 TGGGGATGTTTTGGAGCCGTTTAGGGATGATTTTTCTACTCAAAAAGGCTGCCCATAACATGGTG
131 TGGGGATGTTTTGGAGCCGTTTAGGGATGATTTTTCTACTCAAAAAGGCTGCCCATAACATGGTG
57328 CATCGGTGCACAATCATGGTGCATC
196 CATCGGTGCACAATCATGGTGCATC
57353 GGTGCACAAT
Statistics
Matches: 217, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
220 217 1.00
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.39
Consensus pattern (220 bp):
AAAAATGAAATAAGAATGAAAAACTCTTCTCTTGTGTTTGATTGCTTGGATAGTTGTTCTTCTTT
TTTTCTTCAAGTGTAATTAGCTTGTATTTATAGCTTGGAATGTGTTTGATGTTGTATATAGCCAT
TGGGGATGTTTTGGAGCCGTTTAGGGATGATTTTTCTACTCAAAAAGGCTGCCCATAACATGGTG
CATCGGTGCACAATCATGGTGCATC
Found at i:57347 original size:21 final size:21
Alignment explanation
Indices: 57321--57374 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
57311 CTGCCCATAA
57321 CATGGTGCATCGGTGCACAAT
1 CATGGTGCATCGGTGCACAAT
57342 CATGGTGCATCGGTGCACAAT
1 CATGGTGCATCGGTGCACAAT
57363 CATGGTGCATCG
1 CATGGTGCATCG
57375 ATACCCTTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (21 bp):
CATGGTGCATCGGTGCACAAT
Found at i:57524 original size:29 final size:29
Alignment explanation
Indices: 57503--57560 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
57493 AAACTTTGAA
57503 TAAATTCAATT-AAGTCCAAAAACATTTTG
1 TAAATTCAATTCAAGTCCAAAAACA-TTTG
**
57532 TAAATTTTATTCAAGTCCAAAAACCATTT
1 TAAATTCAATTCAAGTCCAAAAA-CATTT
57561 TGCCTTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 9 0.36
30 14 0.56
31 2 0.08
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (29 bp):
TAAATTCAATTCAAGTCCAAAAACATTTG
Found at i:58561 original size:20 final size:20
Alignment explanation
Indices: 58534--58585 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
58524 AACGCGATCT
58534 CCAAAATCGCAAATCAGTTC
1 CCAAAATCGCAAATCAGTTC
*
58554 CCAGAATCGCAAATCAGTTC
1 CCAAAATCGCAAATCAGTTC
*
58574 CTAAAATCGCAA
1 CCAAAATCGCAA
58586 CGCGATTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.40, C:0.29, G:0.12, T:0.19
Consensus pattern (20 bp):
CCAAAATCGCAAATCAGTTC
Found at i:58666 original size:20 final size:20
Alignment explanation
Indices: 58641--58896 Score: 221
Period size: 20 Copynumber: 12.7 Consensus size: 20
58631 GATTTTCCAT
** *
58641 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCCGTA
* *
58661 AATCGCAACGCGATTCTG-A
1 AATCGCAACGCGAATCCGTA
* * *
58680 CTATCGCAACGAGTATCCGTAA
1 -AATCGCAACGCGAATCCGT-A
*
58702 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
*
58722 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATCCGT-A
* *
58743 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
58763 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATCCGTA
* *
58783 AATCGCAACGCGTATCTGTA
1 AATCGCAACGCGAATCCGTA
* *
58803 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATCCGTA
* * *
58823 AATCGCAATGCGTATCTGTA
1 AATCGCAACGCGAATCCGTA
*
58843 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATCCGT-A
* *
58864 AATCGCAACGCGTATCTGTA
1 AATCGCAACGCGAATCCGTA
58884 AATCGCAACGCGA
1 AATCGCAACGCGA
58897 TTTTTAAAGC
Statistics
Matches: 189, Mismatches: 38, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
19 1 0.01
20 137 0.72
21 50 0.26
22 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGAATCCGTA
Found at i:58704 original size:41 final size:41
Alignment explanation
Indices: 58641--58893 Score: 354
Period size: 41 Copynumber: 6.2 Consensus size: 41
58631 GATTTTCCAT
* *
58641 AATCGCAACGCGAATATG-AAAATCGCAACGCG-ATTCTG-A
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTA-TCTGTA
* * * *
58680 CTATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTA
1 -AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCTGTA
* * *
58722 AATCGCAACGACAATACGTAAAATCGCAACGTGTATCCGTA
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCTGTA
58763 AATCGCAACGAGAATACGT-AAATCGCAACGCGTATCTGTA
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCTGTA
*
58803 AATCGCAACGAGAATACGT-AAATCGCAATGCGTATCTGTA
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCTGTA
*
58843 AATCGCAACGACAATACGTAAAATCGCAACGCGTATCTGTA
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCTGTA
58884 AATCGCAACG
1 AATCGCAACG
58894 CGATTTTTAA
Statistics
Matches: 192, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
40 89 0.46
41 101 0.53
42 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (41 bp):
AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCTGTA
Found at i:59478 original size:20 final size:19
Alignment explanation
Indices: 59453--59557 Score: 78
Period size: 20 Copynumber: 5.6 Consensus size: 19
59443 TTCTAAACTT
59453 AAAATCGCAACCTGAAAATG
1 AAAATCGCAACC-GAAAATG
59473 AAAATCGCAACACGAAAATG
1 AAAATCGCAAC-CGAAAATG
** * *
59493 ACTATCTCAACGAGAGAAATG
1 AAAATCGCAAC-CGA-AAATG
59514 AAAATCGCAA-CG---A-G
1 AAAATCGCAACCGAAAATG
*
59528 AGAATCGCAACGCG-AAATG
1 AAAATCGCAAC-CGAAAATG
59547 AAAATCGCAAC
1 AAAATCGCAAC
59558 GAGATAATCG
Statistics
Matches: 67, Mismatches: 11, Indels: 15
0.72 0.12 0.16
Matches are distributed among these distances:
14 10 0.15
15 1 0.01
16 2 0.03
18 1 0.01
19 12 0.18
20 28 0.42
21 13 0.19
ACGTcount: A:0.49, C:0.21, G:0.18, T:0.12
Consensus pattern (19 bp):
AAAATCGCAACCGAAAATG
Found at i:59513 original size:21 final size:21
Alignment explanation
Indices: 59453--59531 Score: 83
Period size: 20 Copynumber: 3.9 Consensus size: 21
59443 TTCTAAACTT
**
59453 AAAATCGCAACCTGA-AAATG
1 AAAATCGCAACGAGAGAAATG
59473 AAAATCGCAAC-ACGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
** *
59493 ACTATCTCAACGAGAGAAATG
1 AAAATCGCAACGAGAGAAATG
59514 AAAATCGCAACGAGAGAA
1 AAAATCGCAACGAGAGAA
59532 TCGCAACGCG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
20 28 0.57
21 21 0.43
ACGTcount: A:0.51, C:0.19, G:0.18, T:0.13
Consensus pattern (21 bp):
AAAATCGCAACGAGAGAAATG
Found at i:59535 original size:14 final size:14
Alignment explanation
Indices: 59513--59577 Score: 58
Period size: 14 Copynumber: 4.3 Consensus size: 14
59503 CGAGAGAAAT
59513 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
59527 GAGAATCGCAACGCGAAA
1 GAAAATCGCAA--CG--A
59545 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
* *
59560 GATAATCGCAACGC
1 GAAAATCGCAACGA
59574 GAAA
1 GAAA
59578 CCAAAATCGC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
14 25 0.61
15 1 0.02
16 2 0.05
17 2 0.05
18 1 0.02
19 10 0.24
ACGTcount: A:0.46, C:0.22, G:0.23, T:0.09
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:59545 original size:33 final size:33
Alignment explanation
Indices: 59508--59588 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
59498 CTCAACGAGA
59508 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
59541 GAAATGAAAATCGCAACGAGATAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
59574 GAAACCAAAATCGCA
1 GAAATGAAAATCGCA
59589 TTGCGATTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:59606 original size:19 final size:19
Alignment explanation
Indices: 59584--59695 Score: 108
Period size: 19 Copynumber: 6.1 Consensus size: 19
59574 GAAACCAAAA
*
59584 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
59603 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
59617 TCTCGTTGCGATTTTAATT
1 TCGCGTTGCGATTTTCATT
* *
59636 TCGCGTTGCAATTTTAATT
1 TCGCGTTGCGATTTTCATT
**
59655 TCGCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
59674 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
59694 TC
1 TC
59696 AACCAAAAGA
Statistics
Matches: 75, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
14 10 0.13
16 2 0.03
17 3 0.04
19 44 0.59
20 16 0.21
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:61528 original size:94 final size:95
Alignment explanation
Indices: 61367--61739 Score: 552
Period size: 94 Copynumber: 3.8 Consensus size: 95
61357 TAGATTGCTT
* *
61367 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAACTGTTTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
61432 ATTTGTCTTTTTTTTTGTCTTTTGGTTG-A
66 ATTTGTCTTTTTTTTTGTCTTTTGGTTGAA
*
61461 AGTAAATTTATTCGGTTGCTGCCAATCCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
61526 ATTTGTC-TTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTTTTTTTGTCTTTTGGTTGAA
*
61555 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
61620 ATTTGTCTTTGTTTTGTCTTTGTTTTGTCTTTTAGTTGAA
66 ATTTGTC-------T-T-TTT-TTTTGTCTTTTGGTTGAA
* * *
61660 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAATACTCTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
61725 ATTTGTCTTTGTTTT
66 ATTTGTCTTTTTTTT
61740 CACTGTTTAA
Statistics
Matches: 257, Mismatches: 10, Indels: 23
0.89 0.03 0.08
Matches are distributed among these distances:
93 19 0.07
94 141 0.55
95 3 0.01
96 2 0.01
97 1 0.00
98 1 0.00
103 1 0.00
104 2 0.01
105 87 0.34
ACGTcount: A:0.21, C:0.13, G:0.18, T:0.48
Consensus pattern (95 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTTTTTTTGTCTTTTGGTTGAA
Found at i:61637 original size:11 final size:11
Alignment explanation
Indices: 61621--61651 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
61611 GAAGTTAGTA
61621 TTTGTCTTTGT
1 TTTGTCTTTGT
61632 TTTGTCTTTGT
1 TTTGTCTTTGT
61643 TTTGTCTTT
1 TTTGTCTTT
61652 TAGTTGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.10, G:0.16, T:0.74
Consensus pattern (11 bp):
TTTGTCTTTGT
Found at i:61642 original size:105 final size:105
Alignment explanation
Indices: 61527--61739 Score: 399
Period size: 105 Copynumber: 2.0 Consensus size: 105
61517 GAAGTTAGTA
*
61527 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
1 TTTGTCTTTGTTTTGTCTTTTAGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
*
61592 GTGTATTCTTTAACACTGTGAAGTTAGTATTTGTCTTTGT
66 GTGTATTCTTTAACACTCTGAAGTTAGTATTTGTCTTTGT
61632 TTTGTCTTTGTTTTGTCTTTTAGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
1 TTTGTCTTTGTTTTGTCTTTTAGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
*
61697 GTGTATTCTTTAATACTCTGAAGTTAGTATTTGTCTTTGT
66 GTGTATTCTTTAACACTCTGAAGTTAGTATTTGTCTTTGT
61737 TTT
1 TTT
61740 CACTGTTTAA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 105 1.00
ACGTcount: A:0.18, C:0.12, G:0.19, T:0.51
Consensus pattern (105 bp):
TTTGTCTTTGTTTTGTCTTTTAGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTGTATTCTTTAACACTCTGAAGTTAGTATTTGTCTTTGT
Found at i:63313 original size:14 final size:14
Alignment explanation
Indices: 63294--63329 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
63284 ATTGTTTAAT
63294 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
63308 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
63322 TGATTTGT
1 TGATTTGT
63330 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:63458 original size:19 final size:19
Alignment explanation
Indices: 63436--63494 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
63426 AAAAATGACT
63436 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
63455 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
*
63469 ATCGCAATGTGAAATGAAA
1 ATCGCAATGCGAAATGAAA
63488 ATCGCAA
1 ATCGCAA
63495 CGCGGAACTA
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 10 0.31
15 1 0.03
16 1 0.03
17 2 0.06
18 1 0.03
19 17 0.53
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:63623 original size:20 final size:19
Alignment explanation
Indices: 63577--63677 Score: 95
Period size: 19 Copynumber: 5.5 Consensus size: 19
63567 GCGATTCTCT
*
63577 CGTTGCGATTTTCATTTCG
1 CGTTGCGATATTCATTTCG
* *
63596 CATTGCGATAGTCATTTCCG
1 CGTTGCGATATTCATTT-CG
63616 CGTTGCGATATTCATATTCG
1 CGTTGCGATATTCAT-TTCG
*
63636 CGTTGCG--A-T--TTTCA
1 CGTTGCGATATTCATTTCG
*
63650 CGTTGCGATTTTCATTTCG
1 CGTTGCGATATTCATTTCG
*
63669 CATTGCGAT
1 CGTTGCGAT
63678 TCTCTCGTTG
Statistics
Matches: 66, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
14 10 0.15
15 1 0.02
17 2 0.03
18 1 0.02
19 26 0.39
20 24 0.36
21 2 0.03
ACGTcount: A:0.16, C:0.22, G:0.21, T:0.42
Consensus pattern (19 bp):
CGTTGCGATATTCATTTCG
Found at i:63655 original size:14 final size:14
Alignment explanation
Indices: 63636--63663 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
63626 TTCATATTCG
63636 CGTTGCGATTTTCA
1 CGTTGCGATTTTCA
63650 CGTTGCGATTTTCA
1 CGTTGCGATTTTCA
63664 TTTCGCATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTTTCA
Found at i:63660 original size:106 final size:106
Alignment explanation
Indices: 63512--63718 Score: 299
Period size: 106 Copynumber: 2.0 Consensus size: 106
63502 CTAAATTCGT
* * *
63512 GTTGCGATTTTCATTTCGCTTTGCGATTCCCTCGTTCCGATTTTCATTTCGCATTGCGATTCTCT
1 GTTGCGATATTCATTTCGCGTTGCGATTCCCACGTTCCGATTTTCATTTCGCATTGCGATTCTCT
** * *
63577 CGTTGCGATTTTCATTT-CGCATTGCGATAGTCATTTCCGC
66 CGTTGCGATAGTAATTTCCGCATTGCGATAGACATTTCCGC
** *
63617 GTTGCGATATTCATATTCGCGTTGCGATTTTCACGTTGCGATTTTCATTTCGCATTGCGATTCTC
1 GTTGCGATATTCAT-TTCGCGTTGCGATTCCCACGTTCCGATTTTCATTTCGCATTGCGATTCTC
*
63682 TCGTTGCGATAGTAATTTCCGCGTTGCGATAGACATT
65 TCGTTGCGATAGTAATTTCCGCATTGCGATAGACATT
63719 AAGATGATTG
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
105 13 0.15
106 60 0.67
107 16 0.18
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.42
Consensus pattern (106 bp):
GTTGCGATATTCATTTCGCGTTGCGATTCCCACGTTCCGATTTTCATTTCGCATTGCGATTCTCT
CGTTGCGATAGTAATTTCCGCATTGCGATAGACATTTCCGC
Found at i:63700 original size:33 final size:33
Alignment explanation
Indices: 63512--63691 Score: 225
Period size: 33 Copynumber: 5.2 Consensus size: 33
63502 CTAAATTCGT
* *
63512 GTTGCGATTTTCATTTCGCTTTGCGATTCCCTC
1 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
*
63545 GTTCCGATTTTCATTTCGCATTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
*
63578 GTTGCGATTTTCATTTCGCATTGCGATAGTCATTTCCGC
1 GTTGCGATTTTCATTTCGCATTGCGAT--TC---T-CTC
* * * *
63617 GTTGCGATATTCATATTCGCGTTGCGATTTTCAC
1 GTTGCGATTTTCAT-TTCGCATTGCGATTCTCTC
63651 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
63684 GTTGCGAT
1 GTTGCGAT
63692 AGTAATTTCC
Statistics
Matches: 127, Mismatches: 13, Indels: 14
0.82 0.08 0.09
Matches are distributed among these distances:
33 80 0.63
34 15 0.12
35 3 0.02
38 2 0.02
39 15 0.12
40 12 0.09
ACGTcount: A:0.13, C:0.24, G:0.19, T:0.43
Consensus pattern (33 bp):
GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
Found at i:63757 original size:20 final size:20
Alignment explanation
Indices: 63684--63757 Score: 62
Period size: 20 Copynumber: 3.6 Consensus size: 20
63674 CGATTCTCTC
* *
63684 GTTGCGATAGTAATTTCCGC
1 GTTGCGATAGTCATTTCCGT
* **
63704 GTTGCGATAGACA-TTAAGAT
1 GTTGCGATAGTCATTTCCG-T
63724 GATTGCGA-ACGTCATTTCCGT
1 G-TTGCGATA-GTCATTTCCGT
63745 GTTGCGATAGTCA
1 GTTGCGATAGTCA
63758 AATGAATGCC
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 3 0.07
20 23 0.56
21 12 0.29
22 3 0.07
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (20 bp):
GTTGCGATAGTCATTTCCGT
Found at i:66013 original size:14 final size:14
Alignment explanation
Indices: 65994--66020 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
65984 TCCCGTGGCA
65994 TTTTCTTTGGGGAC
1 TTTTCTTTGGGGAC
66008 TTTTCTTTGGGGA
1 TTTTCTTTGGGGA
66021 TTTCTTCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.11, G:0.30, T:0.52
Consensus pattern (14 bp):
TTTTCTTTGGGGAC
Found at i:67158 original size:20 final size:20
Alignment explanation
Indices: 67142--67418 Score: 333
Period size: 20 Copynumber: 13.8 Consensus size: 20
67132 TGATTTATAG
67142 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
67162 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
67182 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
67202 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
67222 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
67242 ATTCGCATTGCGATTTAC-T
1 ATTCGCATTGCGATTTACGT
* * * *
67261 AAATCACATTACGATTTATGT
1 -ATTCGCATTGCGATTTACGT
* *
67282 ATTTGCATTGCGATTTATGT
1 ATTCGCATTGCGATTTACGT
67302 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* *
67322 ATTCTCGTTGCGATTTACAG-
1 ATTCGCATTGCGATTTAC-GT
* * *
67342 ATACGCGTTGCGATTTACGG
1 ATTCGCATTGCGATTTACGT
* * *
67362 ATACACGTTGCGATTTTACGT
1 ATTCGCATTGCGA-TTTACGT
** * *
67383 ATTATCGTTGCGATTTACGG
1 ATTCGCATTGCGATTTACGT
* *
67403 ATACGCGTTGCGATTT
1 ATTCGCATTGCGATTT
67419 TACGGATACT
Statistics
Matches: 229, Mismatches: 23, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
19 2 0.01
20 209 0.91
21 18 0.08
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:67392 original size:41 final size:40
Alignment explanation
Indices: 67309--67437 Score: 145
Period size: 41 Copynumber: 3.2 Consensus size: 40
67299 TGTATTCGCA
* * *
67309 TTGCGATTTACGTATTCTCGTTGCGA-TTTACAGATACGCG
1 TTGCGATTTACGGATACACGTTGCGATTTTAC-GATACGCG
*
67349 TTGCGATTTACGGATACACGTTGCGATTTTACGTATTA-TCG
1 TTGCGATTTACGGATACACGTTGCGATTTTACG-A-TACGCG
* *
67390 TTGCGATTTACGGATACGCGTTGCGATTTTACGGATACTCG
1 TTGCGATTTACGGATACACGTTGCGATTTTAC-GATACGCG
*
67431 TTACGAT
1 TTGCGAT
67438 AGTCAGAATC
Statistics
Matches: 78, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
40 26 0.33
41 49 0.63
42 3 0.04
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (40 bp):
TTGCGATTTACGGATACACGTTGCGATTTTACGATACGCG
Found at i:67398 original size:61 final size:62
Alignment explanation
Indices: 67309--67437 Score: 208
Period size: 61 Copynumber: 2.1 Consensus size: 62
67299 TGTATTCGCA
*
67309 TTGCGA-TTTACGTATTCTCGTTGCGATTTACAGATACGCGTTGCGA-TTTACGGATACACG
1 TTGCGATTTTACGTATTATCGTTGCGATTTACAGATACGCGTTGCGATTTTACGGATACACG
* *
67369 TTGCGATTTTACGTATTATCGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATACTCG
1 TTGCGATTTTACGTATTATCGTTGCGATTTACAGATACGCGTTGCGATTTTACGGATACACG
*
67431 TTACGAT
1 TTGCGAT
67438 AGTCAGAATC
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
60 6 0.10
61 38 0.60
62 19 0.30
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (62 bp):
TTGCGATTTTACGTATTATCGTTGCGATTTACAGATACGCGTTGCGATTTTACGGATACACG
Found at i:67454 original size:61 final size:61
Alignment explanation
Indices: 67326--67460 Score: 166
Period size: 61 Copynumber: 2.2 Consensus size: 61
67316 TTACGTATTC
* * * * *
67326 TCGTTGCGATTTACAGATACGCGTTGCGATTTACGGATACACGTTGCGATTTTACGTATTA
1 TCGTTGCGATTTACAGATACGCGTTGCGATTTACGGATACACGTTACGATGTCACGAATCA
* * *
67387 TCGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATACTCGTTACGATAGTCA-GAATCG
1 TCGTTGCGATTTACAGATACGCGTTGCGA-TTTACGGATACACGTTACGAT-GTCACGAATCA
67449 T-GTTGCGATTTA
1 TCGTTGCGATTTA
67461 TATGTTCACG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
61 39 0.61
62 23 0.36
63 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (61 bp):
TCGTTGCGATTTACAGATACGCGTTGCGATTTACGGATACACGTTACGATGTCACGAATCA
Found at i:67577 original size:20 final size:19
Alignment explanation
Indices: 67528--67581 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
67518 ATTCTTCATA
67528 ATCGCGTTGCGATTCTGAG
1 ATCGCGTTGCGATTCTGAG
* **
67547 AGCTGATTTGCGATTCTGGAG
1 ATC-GCGTTGCGATTCT-GAG
67568 ATCGCGTTGCGATT
1 ATCGCGTTGCGATT
67582 TTTATTTCGC
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 20 0.74
21 5 0.19
ACGTcount: A:0.17, C:0.19, G:0.31, T:0.33
Consensus pattern (19 bp):
ATCGCGTTGCGATTCTGAG
Found at i:70147 original size:21 final size:20
Alignment explanation
Indices: 70103--70176 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
70093 GCAACCTTCG
*
70103 TGCATGGATGCACAGCAGGA
1 TGCATCGATGCACAGCAGGA
**
70123 TGCATCGATGCACAGCCTTGA
1 TGCATCGATGCACAG-CAGGA
* *
70144 TGCATCGATGCACAGAAGAA
1 TGCATCGATGCACAGCAGGA
70164 TGCATCGATGCAC
1 TGCATCGATGCAC
70177 TAATTGCATT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
20 28 0.61
21 18 0.39
ACGTcount: A:0.30, C:0.24, G:0.27, T:0.19
Consensus pattern (20 bp):
TGCATCGATGCACAGCAGGA
Found at i:70402 original size:34 final size:29
Alignment explanation
Indices: 70334--70393 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
70324 AAACTTTGAA
*
70334 TAAATTCAATTAAGTCCAAAAACATTTTG
1 TAAATTCAATTAAGTCCAAAAACATTATG
70363 TAAATTCAATTCAAGTCCAAAAACCATTATG
1 TAAATTCAATT-AAGTCCAAAAA-CATTATG
70394 CCTTAAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 11 0.39
31 6 0.21
ACGTcount: A:0.45, C:0.17, G:0.07, T:0.32
Consensus pattern (29 bp):
TAAATTCAATTAAGTCCAAAAACATTATG
Found at i:73440 original size:407 final size:407
Alignment explanation
Indices: 72680--73462 Score: 1458
Period size: 407 Copynumber: 1.9 Consensus size: 407
72670 ACGAGATGTG
* * *
72680 GTTATATCATTAGTGCACAACCTCAATGTACTCAAATATATAGCATTCTCAGTAGTATACCTTGG
1 GTTACATCATTAGTGCACAACCTCAATGTACTCAAATACATAGCATTCTCAGTAGTACACCTTGG
72745 GTATTTGGAGCAAAGATATACAAAGTTAATACTATTCATAAGTATACTTTTTGATATGGAAAATA
66 GTATTTGGAGCAAAGATATACAAAGTTAATACTATTCATAAGTATACTTTTTGATATGGAAAATA
72810 ATTAGAGTTATTTGTAAAACATTTTGATAAAAACAAATAAGATTTTGTTTACTAAGTTAGTACTA
131 ATTAGAGTTATTTGTAAAACATTTTGATAAAAACAAATAAGATTTTGTTTACTAAGTTAGTACTA
*
72875 TTAGTATTTGCCTCTCTAAGTCATTGACTTAGTGTATGATTTCCTCACGCGTAGGTTTCAAGAAA
196 TTAGTATTTGCCTCTCTAAGTCATCGACTTAGTGTATGATTTCCTCACGCGTAGGTTTCAAGAAA
*
72940 GCTGAAGACTGAGTTGTGGAGGATAACATACCACTTGAAGATCATATCAGGACAAATTAAATGTA
261 GCTGAAGACTGAGTTGTGGAGGATAACATACCACTTCAAGATCATATCAGGACAAATTAAATGTA
73005 AGTTTTTATTAATTTTGTAAACTGTTGGCATGTATTATACTTTTAATTTGAGTATTTGGAGCAAA
326 AGTTTTTATTAATTTTGTAAACTGTTGGCATGTATTATACTTTTAATTTGAGTATTTGGAGCAAA
73070 GATATACAAAGTAAACT
391 GATATACAAAGTAAACT
* *
73087 GTTACATCATTAGTGCACAACCTCAATGTACTCAAATACATAGCATTCTTAGTAGTACACTTTGG
1 GTTACATCATTAGTGCACAACCTCAATGTACTCAAATACATAGCATTCTCAGTAGTACACCTTGG
*
73152 GTATTTGGAGCAAAGATATACAAAGTTAATGCTATTCATAAGTATACTTTTTGATATGGAAAATA
66 GTATTTGGAGCAAAGATATACAAAGTTAATACTATTCATAAGTATACTTTTTGATATGGAAAATA
73217 ATTAGAGTTATTTGTAAAACATTTTGATAAAAACAAATAAGATTTTGTTTACTAAGTTAGTACTA
131 ATTAGAGTTATTTGTAAAACATTTTGATAAAAACAAATAAGATTTTGTTTACTAAGTTAGTACTA
*
73282 TTAGTATTTGCCTCTCTAAGTCATCGACTTAGTGTGTGATTTCCTCACGCGTAGGTTTCAAGAAA
196 TTAGTATTTGCCTCTCTAAGTCATCGACTTAGTGTATGATTTCCTCACGCGTAGGTTTCAAGAAA
* *
73347 GCTGAAGACTGAGTTGTGGAGGATAACATACCACTTCAAGATCATATTAGGATAAATTAAATGTA
261 GCTGAAGACTGAGTTGTGGAGGATAACATACCACTTCAAGATCATATCAGGACAAATTAAATGTA
*
73412 GGTTTTTATTAATTTTGTAAACTGTTGGCATGTATTATACTTTTAATTTGA
326 AGTTTTTATTAATTTTGTAAACTGTTGGCATGTATTATACTTTTAATTTGA
73463 AATGCTCTGA
Statistics
Matches: 364, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
407 364 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.37
Consensus pattern (407 bp):
GTTACATCATTAGTGCACAACCTCAATGTACTCAAATACATAGCATTCTCAGTAGTACACCTTGG
GTATTTGGAGCAAAGATATACAAAGTTAATACTATTCATAAGTATACTTTTTGATATGGAAAATA
ATTAGAGTTATTTGTAAAACATTTTGATAAAAACAAATAAGATTTTGTTTACTAAGTTAGTACTA
TTAGTATTTGCCTCTCTAAGTCATCGACTTAGTGTATGATTTCCTCACGCGTAGGTTTCAAGAAA
GCTGAAGACTGAGTTGTGGAGGATAACATACCACTTCAAGATCATATCAGGACAAATTAAATGTA
AGTTTTTATTAATTTTGTAAACTGTTGGCATGTATTATACTTTTAATTTGAGTATTTGGAGCAAA
GATATACAAAGTAAACT
Found at i:78870 original size:20 final size:22
Alignment explanation
Indices: 78817--78875 Score: 70
Period size: 20 Copynumber: 2.8 Consensus size: 22
78807 TGTATTTCTT
78817 AAGGGTAGTATCGATACCAGTTG
1 AAGGGTAGTATCGATA-CAGTTG
* *
78840 AAGAG-AGTATCGATACTG-TG
1 AAGGGTAGTATCGATACAGTTG
78860 -AGGGTAGTATCGATAC
1 AAGGGTAGTATCGATAC
78876 CAGGGGATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 3 0.09
20 13 0.41
21 2 0.06
22 10 0.31
23 4 0.12
ACGTcount: A:0.32, C:0.12, G:0.31, T:0.25
Consensus pattern (22 bp):
AAGGGTAGTATCGATACAGTTG
Found at i:79583 original size:23 final size:23
Alignment explanation
Indices: 79555--79608 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
79545 TTGGGAAAAA
*
79555 TATGTGGTATTTCGGTGCAAACC
1 TATGTGGTACTTCGGTGCAAACC
*
79578 TATGTGGCACTTCGGTGCAAACC
1 TATGTGGTACTTCGGTGCAAACC
*
79601 TATATGGT
1 TATGTGGT
79609 CGTTCGAGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (23 bp):
TATGTGGTACTTCGGTGCAAACC
Found at i:81198 original size:24 final size:24
Alignment explanation
Indices: 81170--81276 Score: 99
Period size: 24 Copynumber: 4.5 Consensus size: 24
81160 AAACAGAGAT
*
81170 ATCAGAAATCAAAACATAATTCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * *
81194 ATCAGATATCAGAACAGAATCCA-
1 ATCAGAAATCAAAACAGAATTCAG
* * * *
81217 AGTTAGGAATCAGAACAGATTTCAG
1 A-TCAGAAATCAAAACAGAATTCAG
** *
81242 ATCAGATGTCAAAACAGAATTCAA
1 ATCAGAAATCAAAACAGAATTCAG
81266 ATCAGAAATCA
1 ATCAGAAATCA
81277 GATAAAATAT
Statistics
Matches: 63, Mismatches: 18, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
23 1 0.02
24 61 0.97
25 1 0.02
ACGTcount: A:0.49, C:0.17, G:0.14, T:0.21
Consensus pattern (24 bp):
ATCAGAAATCAAAACAGAATTCAG
Found at i:81276 original size:48 final size:48
Alignment explanation
Indices: 81170--81278 Score: 137
Period size: 48 Copynumber: 2.3 Consensus size: 48
81160 AAACAGAGAT
* * *
81170 ATCAGAAATCAAAACATAATTCAGATCAGATATCAGAACAGAATCCAA
1 ATCAGAAATCAGAACAGAATTCAGATCAGATATCAAAACAGAATCCAA
* * * * * *
81218 GTTAGGAATCAGAACAGATTTCAGATCAGATGTCAAAACAGAATTCAA
1 ATCAGAAATCAGAACAGAATTCAGATCAGATATCAAAACAGAATCCAA
81266 ATCAGAAATCAGA
1 ATCAGAAATCAGA
81279 TAAAATATTC
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.49, C:0.17, G:0.15, T:0.20
Consensus pattern (48 bp):
ATCAGAAATCAGAACAGAATTCAGATCAGATATCAAAACAGAATCCAA
Found at i:86103 original size:22 final size:21
Alignment explanation
Indices: 86063--86103 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
86053 TTTTTAAACA
* *
86063 ATTTTTATAAATATCATATTT
1 ATTTATATAAATATAATATTT
86084 ATTTATATAAAATATAATAT
1 ATTTATAT-AAATATAATAT
86104 AATATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTTATATAAATATAATATTT
Found at i:86233 original size:17 final size:17
Alignment explanation
Indices: 86193--86238 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
86183 TTAAAGTTAT
86193 ATATTA-TTTTA-AATA
1 ATATTATTTTTACAATA
*
86208 AT-TACATTTTTACAATA
1 ATAT-TATTTTTACAATA
86225 ATATTATTTTTACA
1 ATATTATTTTTACA
86239 TCTTAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 1 0.04
15 3 0.12
16 5 0.20
17 15 0.60
18 1 0.04
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (17 bp):
ATATTATTTTTACAATA
Found at i:89269 original size:16 final size:16
Alignment explanation
Indices: 89248--89279 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
89238 GGGAGATAAG
89248 ATCCATTAAGTTGTAT
1 ATCCATTAAGTTGTAT
89264 ATCCATTAAGTTGTAT
1 ATCCATTAAGTTGTAT
89280 TCTATTTGCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.44
Consensus pattern (16 bp):
ATCCATTAAGTTGTAT
Found at i:90545 original size:36 final size:36
Alignment explanation
Indices: 90498--90569 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
90488 TGTCATTTGA
90498 ATGATAAAGGGGATAGGGTATGTTACCTGAAACCTT
1 ATGATAAAGGGGATAGGGTATGTTACCTGAAACCTT
90534 ATGATAAAGGGGATAGGGTATGTTACCTGAAACCTT
1 ATGATAAAGGGGATAGGGTATGTTACCTGAAACCTT
90570 TCTTAGTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (36 bp):
ATGATAAAGGGGATAGGGTATGTTACCTGAAACCTT
Found at i:115706 original size:45 final size:45
Alignment explanation
Indices: 115642--115751 Score: 141
Period size: 45 Copynumber: 2.5 Consensus size: 45
115632 GAAAAAAGAG
* *
115642 AGTTTTAAGAAATAAGTTGGGTAACACTGGTAATAACTTCAACAT
1 AGTTTTAAGAAATAAGTTGGGTAACACTGGTAATAACTCCAACAA
*** *
115687 AGTTTTAAGAAATAAGTTGGGTAATTTTGGTAATAGCTCCAACAA
1 AGTTTTAAGAAATAAGTTGGGTAACACTGGTAATAACTCCAACAA
* *
115732 AG-TGTGAGAAATAAGTTGGG
1 AGTTTTAAGAAATAAGTTGGG
115752 AATCCAACAT
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 16 0.28
45 41 0.72
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (45 bp):
AGTTTTAAGAAATAAGTTGGGTAACACTGGTAATAACTCCAACAA
Found at i:117480 original size:101 final size:99
Alignment explanation
Indices: 117313--118297 Score: 733
Period size: 101 Copynumber: 9.9 Consensus size: 99
117303 ATCTCCTTTG
* * * * *
117313 TTATAAACTGTTTTGTCTTGCTTTCGCATAATATAAAGG-TTC-AA-ATATAACATAAACGGTTA
1 TTATAAACTGTTTTGTCTTACTTTTGCATAATATAAAGGTTTCAAACATATAACCTAAATGATTA
* * *
117375 ACAATTTAAAAAGGTGCTACCTATAATGTTATAG
66 ACAATTAAAAAAGGCGCTACCTATAATGTTATAC
* * * * *
117409 TTATAAACATGTTTTGTCTAACTTTTGCATGATAAAAACGGTTTCCAATATATAACCTAAATGAT
1 TTATAAAC-TGTTTTGTCTTACTTTTGCATAATATAAA-GGTTTCAAACATATAACCTAAATGAT
* *
117474 TAACAATTAAAAAAAAGGCGCAACCTATAATGTTAAAC
64 TAACAATT--AAAAAAGGCGCTACCTATAATGTTATAC
* * * * *
117512 TTA-AAATCTTTTTTATCTTACTTTTTCATAATATAAATGTCTTCAAACATATAATCTAAACT-A
1 TTATAAA-CTGTTTTGTCTTACTTTTGCATAATATAAAGGT-TTCAAACATATAACCTAAA-TGA
* * * *
117575 TTGACAATTAAAAAA---GAT-GCT-T-ATGTTAAAC
63 TTAACAATTAAAAAAGGCGCTACCTATAATGTTATAC
** * * **
117606 TTATAAACCCTTCTT-TCTTACTTTT-CAATAATATTAAAGGTTTCAAATATATAACGTAAACAA
1 TTATAAACTGTT-TTGTCTTACTTTTGC-ATAATA-TAAAGGTTTCAAACATATAACCTAAATGA
* * * *
117669 TTAACAAATTAAAAAAGGCACAACTTATAATGTTATGC
63 TTAAC-AATTAAAAAAGGCGCTACCTATAATGTTATAC
* * *
117707 TTATAAACTTGTTTTGTCTTACTTTTGCATAATAAAAATGGTTTCCAACATTTAACCTAAACTG-
1 TTATAAAC-TGTTTTGTCTTACTTTTGCATAATATAAA-GGTTTCAAACATATAACCTAAA-TGA
* * * *
117771 TTGATAATTAAAAAAAAGGCG-TAACCTAGAATGTTAAAC
63 TTAACAATT--AAAAAAGGCGCT-ACCTATAATGTTATAC
* * * * * *
117810 TTATAAACCTTTTTTGTCTTACTTTTTCATAATATAAATGGATTCAAACATATAATCGAAACGAT
1 TTATAAA-CTGTTTTGTCTTACTTTTGCATAATATAAA-GGTTTCAAACATATAACCTAAATGAT
* * *
117875 TAACAATTAAAAAAGACGTTACCTACAATGTTATAC
64 TAACAATTAAAAAAGGCGCTACCTATAATGTTATAC
* *
117911 TTATAAACATGTTTTGTCTTACTTTTGGATAATATTAAAGGTTTCAAACATATAACGTAAATGAT
1 TTATAAAC-TGTTTTGTCTTACTTTTGCATAATA-TAAAGGTTTCAAACATATAACCTAAATGAT
* * * *
117976 TGACAATTAAAAAATGCGTTACCTATAATGTTATGC
64 TAACAATTAAAAAAGGCGCTACCTATAATGTTATAC
* *
118012 TTATAAACTTGTTTTGTCTTACTTTTGCATAA-AAAAATGGTTTCCAACATATAACCTAAAT-AG
1 TTATAAAC-TGTTTTGTCTTACTTTTGCATAATATAAA-GGTTTCAAACATATAACCTAAATGA-
* * * * * * *
118075 TTGACAATTAAAAAAAAGGTGCAACATAGAATTTTAAAC
63 TTAACAATT--AAAAAAGGCGCTACCTATAATGTTATAC
* * * * *
118114 TTATAAGCCT-TTATTGTCTTACTTTTTCATAATA-AACGGTTTCAAACATATAATCTAAACCG-
1 TTATAA-ACTGTT-TTGTCTTACTTTTGCATAATATAAAGGTTTCAAACATATAACCTAAA-TGA
* * * * *
118176 GTGACAATT-AAAAAGACTCTACCTACAAT-TTATTAC
63 TTAACAATTAAAAAAGGCGCTACCTATAATGTTA-TAC
* * * * * ** * *
118212 --ATAACCTGCTTTGTTTTA-GTTTGCATAACATAAACAATTTCATACATATAACATAAATGATT
1 TTATAAACTGTTTTGTCTTACTTTTGCATAATATAAA-GGTTTCAAACATATAACCTAAATGATT
* * *
118274 GACAATTGAAAAAGGCACTACCTA
65 AACAATTAAAAAAGGCGCTACCTA
118298 GACATACGAT
Statistics
Matches: 710, Mismatches: 129, Indels: 99
0.76 0.14 0.11
Matches are distributed among these distances:
93 1 0.00
94 61 0.09
95 35 0.05
96 40 0.06
97 42 0.06
98 18 0.03
99 8 0.01
100 41 0.06
101 211 0.30
102 142 0.20
103 110 0.15
104 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (99 bp):
TTATAAACTGTTTTGTCTTACTTTTGCATAATATAAAGGTTTCAAACATATAACCTAAATGATTA
ACAATTAAAAAAGGCGCTACCTATAATGTTATAC
Found at i:117729 original size:196 final size:197
Alignment explanation
Indices: 117313--118189 Score: 637
Period size: 204 Copynumber: 4.4 Consensus size: 197
117303 ATCTCCTTTG
* * * **
117313 TTATAAAC-TGTTTTGTCTTGCTTTCGCATAATATAAA-GGTTC-AA-ATATAACATAAACGGTT
1 TTATAAACTTGTTTTGTCTTACTTTTGCATAATATAAATGTTTCAAACATATAAC-TAAACTATT
* * * * * * * * * *
117374 AACAATT-TAAAAAGGTGCTACCTATAATGTTATAGTTATAAA-CATGTTTTGTCTAACTTTTGC
65 GACAATTAAAAAAAAG-G---CGTATAATGTTAAACTTATAAACCCT-TCTTGTCTTACTTTTTC
* * * * * *
117437 ATGATAAAAACGGTTTCCAATATATAACCTAAATGATTAACAATTAAAAAAAAGGCGCAACCTAT
125 ATAATATAAATGGTTTCAAATATATAACGTAAACGATTAACAATT--AAAAAAGGCGCAACCTAT
*
117502 AATGTTAAAC
188 AATGTTATAC
* *
117512 TTA-AAATCTT-TTTTATCTTACTTTTTCATAATATAAATGTCTTCAAACATATAATCTAAACTA
1 TTATAAA-CTTGTTTTGTCTTACTTTTGCATAATATAAATGT-TTCAAACATATAA-CTAAACTA
* *
117575 TTGACAATTAAAAAAGATGC-T-T-ATGTTAAACTTATAAACCCTTCTT-TCTTAC-TTTTCAAT
63 TTGACAATTAAAAAAAAGGCGTATAATGTTAAACTTATAAACCCTTCTTGTCTTACTTTTTC-AT
* * *
117635 AATATTAAA-GGTTTCAAATATATAACGTAAACAATTAACAAATTAAAAAAGGCACAACTTATAA
127 AATA-TAAATGGTTTCAAATATATAACGTAAACGATTAAC-AATTAAAAAAGGCGCAACCTATAA
*
117699 TGTTATGC
190 TGTTATAC
* * * *
117707 TTATAAACTTGTTTTGTCTTACTTTTGCATAATAAAAATGGTTTCCAACATTTAACCTAAACTGT
1 TTATAAACTTGTTTTGTCTTACTTTTGCATAATATAAAT-GTTTCAAACATATAA-CTAAACTAT
* * *
117772 TGATAATTAAAAAAAAGGCGTAACCTAGAATGTTAAACTTATAAACCTTTTTTGTCTTACTTTTT
64 TGACAATTAAAAAAAAGGCGT-A--T--AATGTTAAACTTATAAACCCTTCTTGTCTTACTTTTT
* * * ** *
117837 CATAATATAAATGGATTCAAACATATAATCG-AAACGATTAACAATTAAAAAAGACGTTACCTAC
124 CATAATATAAATGGTTTCAAATATATAA-CGTAAACGATTAACAATTAAAAAAGGCGCAACCTAT
117901 AATGTTATAC
188 AATGTTATAC
* * *
117911 TTATAAACATGTTTTGTCTTACTTTTGGATAATATTAAAGGTTTCAAACATATAACGTAAA-TGA
1 TTATAAACTTGTTTTGTCTTACTTTTGCATAATA-TAAATGTTTCAAACATATAAC-TAAACT-A
* * ** * *
117975 TTGACAATT-AAAAAATGCGTTACCTATAATGTTATGCTTATAAA-CTTGTTTTGTCTTACTTTT
63 TTGACAATTAAAAAAAAG-G---CGTATAATGTTAAACTTATAAACCCT-TCTTGTCTTACTTTT
* * * * * * * * *
118038 GCATAA-AAAAATGGTTTCCAACATATAACCTAAA-TAGTTGACAATTAAAAAAAAGGTGCAACA
123 TCATAATATAAATGGTTTCAAATATATAACGTAAACGA-TTAACAATT--AAAAAAGGCGCAACC
* * *
118101 TAGAATTTTAAAC
185 TATAATGTTATAC
* * * ** ***
118114 TTATAAGCCTT-TATTGTCTTACTTTTTCATAATA-AACGGTTTCAAACATATAATCTAAACCGG
1 TTATAA-ACTTGTTTTGTCTTACTTTTGCATAATATAAATGTTTCAAACATATAA-CTAAACTAT
118177 TGACAATTAAAAA
64 TGACAATTAAAAA
118190 GACTCTACCT
Statistics
Matches: 549, Mismatches: 86, Indels: 83
0.76 0.12 0.12
Matches are distributed among these distances:
195 34 0.06
196 99 0.18
197 27 0.05
198 6 0.01
199 28 0.05
200 5 0.01
201 67 0.12
202 42 0.08
203 75 0.14
204 117 0.21
205 39 0.07
206 8 0.01
207 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (197 bp):
TTATAAACTTGTTTTGTCTTACTTTTGCATAATATAAATGTTTCAAACATATAACTAAACTATTG
ACAATTAAAAAAAAGGCGTATAATGTTAAACTTATAAACCCTTCTTGTCTTACTTTTTCATAATA
TAAATGGTTTCAAATATATAACGTAAACGATTAACAATTAAAAAAGGCGCAACCTATAATGTTAT
AC
Found at i:118720 original size:101 final size:99
Alignment explanation
Indices: 118456--119430 Score: 531
Period size: 101 Copynumber: 9.8 Consensus size: 99
118446 CAAACTAGTT
* * * * ** * *
118456 TTTTGTCTTATTTTTGCATAACAAAAACAATTTCAAACATATAACCTAAATGATTGACAATTTAA
1 TTTTGTCTTACTTTTGCATAATATAAACAGTTTCAAACATATAATGTAAACGGTTGACAA-TTAA
* * * * * *
118521 AAAATACGCAACC-TAACTGTTAAACTTATAAACTTT
65 AAAAGATGCTACCTTAA-TGTTATA-TTATAAACCTA
* * * * * *
118557 TTTTATCTTACTTTTTCATAATAT-AATATTTTCAAACATATAAT-TTAACGGTTGACAATTGAA
1 TTTTGTCTTACTTTTGCATAATATAAACAGTTTCAAACATATAATGTAAACGGTTGACAATTAAA
* * *
118620 AAAGATGCTACCTTCAATGTTATGTTAGATAACATA
66 AAAGATGCTACCTT-AATGTTATATTATA-AACCTA
* * * * * *
118656 TTTTGTTTTAGTTTTGCATAACATAAACAGTTTCATACATATAATGTAAGCGGTTGACAATTGAA
1 TTTTGTCTTACTTTTGCATAATATAAACAGTTTCAAACATATAATGTAAACGGTTGACAATTAAA
* *
118721 AAAG-TGCTACCTATAATGTTATACTTAAAAAACTTA
66 AAAGATGCTACCT-TAATGTTATA-TT-ATAAACCTA
* * *
118757 TTTTGTCTTAC-TTTGTATAATATAAA-AGTTTTCAAACATAT-ACGTAAACGGTTGATAATTAA
1 TTTTGTCTTACTTTTGCATAATATAAACAG-TTTCAAACATATAATGTAAACGGTTGACAATT-A
118819 AAAAAGAAT--TACCTATAATGTTATAATTATAAACCTA
64 AAAAAG-ATGCTACCT-TAATGTTAT-ATTATAAACCTA
* * * * * * * *
118856 TTTTGTCTTACTTTTGCATAATAGAAATAGCTTCCAACATAT-ATCATAAATGGTTAACAATAAA
1 TTTTGTCTTACTTTTGCATAATATAAACAGTTTCAAACATATAAT-GTAAACGGTTGACAATTAA
** ** * * * * * *
118920 AAAAGGCGAAACCTAGAATAATAAAATTTTAAACCTT
65 AAAAGATGCTACCT-TAAT-GTTATATTATAAACCTA
* * * * * *
118957 TTTTGTCTTACTTTTTCATAATATAAACAATTTCAAACATATAATCTAAACGATTGATAAATAAA
1 TTTTGTCTTACTTTTGCATAATATAAACAGTTTCAAACATATAATGTAAACGGTTGACAATTAAA
* * * * *
119022 AAAGGA-GCTACCTACAATGTTGTATTACATAACTTG
66 AAA-GATGCTACCT-TAATGTTATATTATA-AACCTA
* * * * * * *
119058 TTTTATTTTAGTTTTGCATAACATAAACGGTTTCATACATATAACGTAAACGGTTGACAATTAAA
1 TTTTGTCTTACTTTTGCATAATATAAACAGTTTCAAACATATAATGTAAACGGTTGACAATTAAA
** * * *
119123 AAAGGCGCTGCCTATAATATTATACTTATAAACCTGT
66 AAAGATGCTACCT-TAATGTTATA-TTATAAACCT-A
* * * ** *
119160 TTTTATCTTACTTTTACATAATA-AAAGCGGTTTCAAACATATAAACTAAAC-ATTGA-AGATTA
1 TTTTGTCTTACTTTTGCATAATATAAA-CAGTTTCAAACATATAATGTAAACGGTTGACA-ATTA
* * * *
119222 AAAAA-AGGCACGACCTAGAATGTTGA-ACTTATAAA-CTT
64 AAAAAGATG--CTACCT-TAATGTT-ATA-TTATAAACCTA
* * * * * * * *
119260 TTTTGTCTTACTTTTTCAT-AT-TAAACGGTTTCGAACATATAATCTAAATGATTGACAAGTAGA
1 TTTTGTCTTACTTTTGCATAATATAAACAGTTTCAAACATATAATGTAAACGGTTGACAATTAAA
* * * * * *
119323 AAAGTTGCTACCTACAATGTTAT-GTACATAACTTG
66 AAAGATGCTACCT-TAATGTTATATTATA-AACCTA
* * ** * * * *
119358 TTTTGT-TTAGTTTTGCATATTAT-AAC-GTTTCATTCATATAACGTAAATGGTTAAAAATT-AA
1 TTTTGTCTTACTTTTGCATAATATAAACAGTTTCAAACATATAATGTAAACGGTTGACAATTAAA
*
119419 AAACATGCTACC
66 AAAGATGCTACC
119431 AAAAAAGACT
Statistics
Matches: 682, Mismatches: 153, Indels: 83
0.74 0.17 0.09
Matches are distributed among these distances:
96 14 0.02
97 37 0.05
98 61 0.09
99 94 0.14
100 158 0.23
101 246 0.36
102 71 0.10
103 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.37
Consensus pattern (99 bp):
TTTTGTCTTACTTTTGCATAATATAAACAGTTTCAAACATATAATGTAAACGGTTGACAATTAAA
AAAGATGCTACCTTAATGTTATATTATAAACCTA
Found at i:118810 original size:200 final size:198
Alignment explanation
Indices: 118433--119182 Score: 633
Period size: 200 Copynumber: 3.7 Consensus size: 198
118423 TGTTACTTGT
* * * * *
118433 AATGTTATACTTACA-AACTAGTTTTTTGTCTTATTTTTGCATAACAAAAACAATTTCAAACATA
1 AATGTTATA-TTACATAAC-A-TATTTTGTCTTAGTTTTGCATAACATAAACAGTTTCATACATA
* * * * * *
118497 TAACCTAAATGATTGACAATTTAAAAAA-TACGCAACCTA-ACTGTTAAACTT-ATAAACTTTTT
63 TAACGTAAACGGTTGACAA-TTAAAAAAGT--GCAACCTATAATATTAAACTTAAAAAAC-TTTT
* * * * *
118559 TTATCTTACTTTTTCATAATATAATATTTTCAAACATATAATTTAACGGTTGACAATTGAAAAAG
124 TTATCTTACTTTTTCATAATATAAAATTTTCAAACATAT-ACTAAACGGTTGATAATTAAAAAAG
118624 ATGCTACCTTC
188 ATGCTACCTTC
* * *
118635 AATGTTATGTTAGATAACATATTTTGTTTTAGTTTTGCATAACATAAACAGTTTCATACATATAA
1 AATGTTATATTACATAACATATTTTGTCTTAGTTTTGCATAACATAAACAGTTTCATACATATAA
* * * * * * *
118700 TGTAAGCGGTTGACAATTGAAAAAGTGCTACCTATAATGTTATACTTAAAAAACTTATTTTGTCT
66 CGTAAACGGTTGACAATTAAAAAAGTGCAACCTATAATATTAAACTTAAAAAACTT-TTTTATCT
*
118765 TACTTTGT-ATAATATAAAAGTTTTCAAACATATACGTAAACGGTTGATAATTAAAAAAAGAAT-
130 TACTTTTTCATAATATAAAA-TTTTCAAACATATAC-TAAACGGTTGATAATT-AAAAAAG-ATG
118828 -TACCTAT-
191 CTACCT-TC
* * * * * * *
118835 AATGTTATAATTATA-AACCTATTTTGTCTTACTTTTGCATAATAGAAATAGCTTCCA-ACATAT
1 AATGTTAT-ATTACATAACATATTTTGTCTTAGTTTTGCATAACATAAACAG-TTTCATACATAT
* * * * * * * * ** * *
118898 ATCATAAATGGTTAACAATAAAAAAAG-GCGAAACCTAGAATAATAAAATTTTAAACCTTTTTTG
64 AACGTAAACGGTTGACAATTAAAAAAGTGC--AACCTATAATATTAAACTTAAAAAACTTTTTTA
* * *
118962 TCTTACTTTTTCATAATATAAACAATTTCAAACATATAATCTAAACGATTGATAAATAAAAAAGG
127 TCTTACTTTTTCATAATATAAA-ATTTTCAAACATAT-A-CTAAACGGTTGATAATTAAAAAA-G
*
119027 A-GCTACCTAC
188 ATGCTACCTTC
* * * * * *
119037 AATGTTGTATTACATAACTTGTTTTATTTTAGTTTTGCATAACATAAACGGTTTCATACATATAA
1 AATGTTATATTACATAACATATTTTGTCTTAGTTTTGCATAACATAAACAGTTTCATACATATAA
* ** * * *
119102 CGTAAACGGTTGACAATTAAAAAAGGCGCTGCCTATAATATTATACTTATAAACCTGTTTTTATC
66 CGTAAACGGTTGACAATTAAAAAA-GTGCAACCTATAATATTAAACTTAAAAAACT-TTTTTATC
*
119167 TTACTTTTACATAATA
129 TTACTTTTTCATAATA
119183 AAAGCGGTTT
Statistics
Matches: 439, Mismatches: 82, Indels: 53
0.76 0.14 0.09
Matches are distributed among these distances:
198 7 0.02
199 32 0.07
200 181 0.41
201 77 0.18
202 116 0.26
203 24 0.05
204 2 0.00
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (198 bp):
AATGTTATATTACATAACATATTTTGTCTTAGTTTTGCATAACATAAACAGTTTCATACATATAA
CGTAAACGGTTGACAATTAAAAAAGTGCAACCTATAATATTAAACTTAAAAAACTTTTTTATCTT
ACTTTTTCATAATATAAAATTTTCAAACATATACTAAACGGTTGATAATTAAAAAAGATGCTACC
TTC
Done.