Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007117.1 Hibiscus syriacus cultivar Beakdansim tig00018602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63761

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39--64
2
13.0
2
100
0
52
50
0
0
50
1.00
98--147
21
2.3
21
80
12
57
58
0
6
36
1.23
596--700
37
2.8
37
88
0
156
29
15
15
40
1.88
1435--3124
106
16.0
106
90
2
2484
23
17
24
34
1.96
3486--3547
30
2.0
32
87
9
92
35
19
14
30
1.92
3699--3754
24
2.3
24
90
0
85
39
3
19
37
1.69
3953--4022
22
3.2
22
91
0
113
18
11
27
42
1.84
4628--4707
7
11.6
7
74
11
67
2
12
3
81
0.93
4630--4678
20
2.5
20
81
12
66
4
12
2
81
0.91
4642--4705
11
5.9
11
73
14
53
1
14
4
79
0.96
4650--4707
31
1.9
30
89
10
91
1
13
5
79
0.98
4628--4707
13
5.8
14
77
20
71
2
12
3
81
0.93
4629--4706
19
4.2
19
68
22
58
2
12
3
80
0.95
9217--9248
2
16.0
2
100
0
64
50
0
0
50
1.00
10091--10187
37
2.6
36
79
6
113
30
12
16
40
1.85
12212--12409
102
1.9
102
93
2
344
41
21
16
20
1.90
14846--14879
9
3.7
9
88
7
50
88
5
5
0
0.64
30561--30629
22
3.3
21
76
8
61
37
1
4
56
1.28
33410--33483
34
2.1
35
92
2
123
32
1
22
43
1.62
36546--36588
13
3.0
14
83
10
52
53
6
2
37
1.41
41472--41505
16
2.1
16
88
0
50
50
0
2
47
1.16
42065--42111
23
2.1
23
84
7
62
34
12
14
38
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42038--42285
130
1.9
130
90
0
397
35
12
14
37
1.84
42682--42757
35
2.2
35
90
0
116
36
1
22
39
1.63
54981--55198
44
5.0
44
91
0
355
25
22
10
42
1.84
57279--57326
15
3.1
16
82
8
55
27
0
0
72
0.84
57279--57326
16
3.0
17
85
11
66
27
0
0
72
0.84
58574--58617
17
2.6
16
82
13
52
20
29
22
27
1.99
58965--59017
28
2.0
27
81
7
63
22
11
16
49
1.78
61401--61448
25
2.0
24
84
8
62
22
0
2
75
0.91
62350--62383
2
17.5
2
93
6
61
50
0
0
50
1.00

Tables:   1

The End!