genome.fa.s7118.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007118.1 Hibiscus syriacus cultivar Beakdansim tig00018603_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49846

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3859--3904	14	3.5	14	82	14	62	67	0	0	32	0.91
3921--4312	36	10.9	36	82	9	350	44	8	2	43	1.49
4633--4662	15	1.9	16	93	6	53	20	6	6	66	1.38
7893--7925	18	1.9	17	88	11	50	36	0	0	63	0.95
7879--7983	42	2.5	42	83	4	124	41	8	0	48	1.40
7911--7963	23	2.3	23	83	6	72	37	5	1	54	1.35
7895--7983	42	2.1	41	87	6	126	40	6	1	51	1.36
7987--8020	16	2.2	16	89	5	52	79	8	0	11	0.94
8405--8554	40	3.7	40	77	0	147	26	22	18	32	1.97
8650--10327	29	50.9	29	63	22	189	32	18	22	27	1.97
8679--8803	38	3.5	38	69	18	124	30	21	22	25	1.99
8649--10231	67	23.9	67	84	2	1888	32	18	21	27	1.96
9910--10327	96	4.3	96	72	16	370	31	19	22	27	1.98
10205--10358	67	2.3	67	91	0	245	29	20	23	26	1.99
10042--10358	163	1.9	163	88	0	481	31	19	21	27	1.98
11897--12115	54	4.1	54	91	1	316	28	17	20	34	1.95
12042--12298	54	4.8	54	86	0	307	37	15	12	34	1.85
11934--12277	108	3.2	107	82	2	357	35	15	14	34	1.88
11988--12291	162	1.9	162	80	0	365	37	15	13	34	1.86
12717--12761	18	2.5	18	100	0	90	37	31	6	24	1.81
23299--23324	3	8.7	3	100	0	52	0	0	30	69	0.89
25078--25147	24	2.9	23	83	8	70	50	21	21	7	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29340--29371	16	2.0	16	93	0	55	40	3	0	56	1.15
29894--29938	16	2.6	19	76	16	53	28	0	4	66	1.11
29889--29992	34	3.1	33	80	13	90	35	0	2	60	1.18
29944--29977	17	1.9	18	88	5	52	38	0	2	58	1.13
29922--29997	31	2.4	31	82	12	84	38	1	1	59	1.14
31721--31768	21	2.3	21	85	0	60	25	39	12	22	1.89
31772--31865	21	4.5	21	92	5	129	18	35	26	20	1.95
32388--32484	33	2.9	34	85	3	133	55	4	3	37	1.35
32386--32491	34	3.2	33	82	8	133	54	4	2	37	1.36
32871--33482	128	4.8	128	97	0	1158	33	19	25	22	1.97
32871--33482	255	2.4	256	97	1	1158	33	19	25	22	1.97
33550--33589	8	5.1	8	81	6	55	37	27	0	35	1.57
36542--36579	13	3.0	13	88	3	60	44	0	0	55	0.99
38795--38853	24	2.5	24	83	5	68	28	23	18	28	1.98
38838--38926	32	2.9	30	83	6	108	32	17	20	29	1.96
42697--42732	18	1.9	19	88	5	56	41	8	0	50	1.33
42751--42792	13	3.0	14	82	6	50	40	19	0	40	1.51
42991--43079	30	2.9	31	72	5	90	33	21	15	29	1.94
46211--46271	25	2.4	25	94	0	104	40	11	3	44	1.57
47100--47148	22	2.1	22	85	7	62	32	28	18	20	1.96
47152--47224	32	2.4	30	84	8	101	32	21	19	26	1.97

Tables:   1

The End!