genome.fa.s7119.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007119.1 Hibiscus syriacus cultivar Beakdansim tig00018604_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58467

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6375--6399	10	2.5	10	100	0	50	20	8	20	52	1.71
22750--22810	18	3.4	17	76	19	61	80	0	18	1	0.80
24047--24553	136	3.7	135	83	5	635	29	20	17	32	1.96
24430--24654	95	2.4	95	83	3	274	31	19	16	33	1.94
25027--25073	25	1.9	25	86	4	69	17	2	8	72	1.19
25155--25210	23	2.4	23	93	0	94	53	1	5	39	1.34
25085--25267	67	2.6	68	80	14	196	48	0	8	42	1.37
25160--25267	23	4.9	21	71	13	74	48	0	8	42	1.39
25145--25283	69	2.1	63	78	13	145	46	1	7	43	1.41
34431--34484	19	2.8	20	85	5	83	22	33	20	24	1.97
34620--34658	21	1.9	20	84	5	51	30	25	23	20	1.98
34943--35011	34	2.1	33	88	2	102	31	15	24	27	1.96
37669--37726	18	3.1	18	79	13	62	31	8	8	51	1.63
37669--37726	21	3.0	20	83	11	68	31	8	8	51	1.63
37947--38001	19	2.8	19	80	2	65	25	30	18	25	1.98
38020--38057	20	1.9	20	94	0	67	21	36	21	21	1.95
38165--38204	20	1.9	22	90	10	66	37	37	10	15	1.80
38420--38490	34	2.1	33	86	2	97	30	14	29	25	1.94
41702--41762	23	2.7	23	81	0	77	16	26	26	31	1.96
42515--42557	21	2.0	23	86	9	63	62	4	2	30	1.28
43150--43245	43	2.2	43	96	0	174	12	51	27	9	1.70
44034--44091	3	20.0	3	83	13	77	67	0	1	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44034--44091	16	3.8	15	80	10	64	67	0	1	31	1.01
44382--44857	122	4.0	123	90	4	685	26	20	14	38	1.91
44656--44861	113	1.8	113	91	3	344	28	20	13	37	1.90
46016--46056	21	2.0	21	95	0	73	58	7	7	26	1.51
53763--53794	15	2.1	15	94	0	55	46	6	21	25	1.74
57675--57734	23	2.5	24	78	5	59	65	1	0	33	1.03

Tables:   1

The End!