Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007121.1 Hibiscus syriacus cultivar Beakdansim tig00018608_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81555

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4781--4833
29
1.9
27
88
11
81
32
15
3
49
1.62
5912--6072
60
2.7
60
82
3
182
31
23
6
38
1.81
7011--7039
15
1.9
15
100
0
58
72
0
0
27
0.85
8831--8880
23
2.3
22
89
6
75
22
4
0
74
0.99
8847--8882
9
3.9
9
85
7
54
19
0
0
80
0.71
14189--14216
14
2.0
14
100
0
56
28
21
28
21
1.99
19469--19500
16
1.9
17
93
6
57
81
3
15
0
0.82
20092--20118
14
1.9
14
100
0
54
40
22
14
22
1.90
22985--23027
2
22.5
2
90
9
72
48
0
0
51
1.00
22982--23030
10
4.5
11
92
7
75
46
0
0
53
1.00
23170--23194
4
6.2
4
100
0
50
24
0
0
76
0.80
25489--25514
2
13.0
2
100
0
52
50
0
0
50
1.00
45226--45281
29
2.0
28
93
6
96
30
0
12
57
1.36
45305--45363
15
3.9
15
72
16
59
69
1
0
28
0.98
45303--45359
30
1.9
30
96
0
105
70
1
0
28
0.98
45305--45381
23
3.4
22
76
5
64
72
1
1
24
1.00
45312--45377
30
2.2
29
83
8
78
74
1
1
22
0.99
45698--45748
22
2.3
22
86
0
84
33
0
0
66
0.92
45796--45837
20
2.1
19
86
8
57
59
14
4
21
1.53
48276--48302
12
2.2
12
100
0
54
59
18
7
14
1.58
59761--59803
21
2.0
21
81
0
50
27
30
25
16
1.97
59831--59868
20
1.9
20
88
0
58
23
34
31
10
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60348--60668
103
3.1
103
97
0
597
24
12
25
37
1.91
60685--60747
23
2.7
23
87
4
92
20
26
26
25
1.99
64098--64521
209
2.0
206
93
2
715
40
19
17
23
1.91
66173--66280
40
2.8
37
80
12
119
44
2
0
51
1.22
66242--66314
29
2.3
32
82
15
91
45
1
1
52
1.18
66239--66326
14
6.2
14
73
11
63
46
1
1
51
1.15
67658--67683
12
2.2
12
100
0
52
38
11
7
42
1.70
69810--69864
27
2.0
28
89
10
87
34
1
1
61
1.17
71093--71157
17
3.9
16
71
13
51
47
0
3
49
1.17
71460--71499
14
3.1
13
82
10
55
45
0
0
55
0.99
71507--71542
17
2.1
17
89
5
54
52
0
0
47
1.00
72079--72122
21
2.1
21
91
0
70
54
18
6
20
1.66
73993--74408
41
10.2
41
72
8
226
35
15
17
31
1.91

Tables:   1

The End!