Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007123.1 Hibiscus syriacus cultivar Beakdansim tig00018611_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 76900
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.33
Found at i:6502 original size:149 final size:150
Alignment explanation
Indices: 6313--6618 Score: 551
Period size: 150 Copynumber: 2.0 Consensus size: 150
6303 GGGTAGAGGG
* *
6313 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTT-GAAAGACACA
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACA
*
6377 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
66 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATT
*
6442 ATATGGCACTACGGTGTAAT
131 ATATGGCACTACGGTGCAAT
*
6462 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACA
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACA
*
6527 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTTCTTATGGACATCATT
66 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATT
6592 ATATGGCACTACGGTGCAAT
131 ATATGGCACTACGGTGCAAT
6612 TCTACGC
1 TCTACGC
6619 AGCACTTCGG
Statistics
Matches: 150, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
149 51 0.34
150 99 0.66
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (150 bp):
TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACA
TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATT
ATATGGCACTACGGTGCAAT
Found at i:6640 original size:23 final size:23
Alignment explanation
Indices: 6597--6640 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
6587 TCATTATATG
*
6597 GCACTACGGTGCAATTCTACGCA
1 GCACTACGGTGCAATTATACGCA
* *
6620 GCACTTCGGTGCATTTATACG
1 GCACTACGGTGCAATTATACG
6641 AGCTGTGGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (23 bp):
GCACTACGGTGCAATTATACGCA
Found at i:13536 original size:149 final size:150
Alignment explanation
Indices: 13347--13650 Score: 547
Period size: 150 Copynumber: 2.0 Consensus size: 150
13337 GGGTAGAGGG
* *
13347 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTT-GAAAGACACA
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACA
* *
13411 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
66 TACTTGATCCCTAATATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATT
13476 ATATGGCACTACGGTGCAAT
131 ATATGGCACTACGGTGCAAT
*
13496 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACA
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACA
*
13561 TACTTGATCCCTAATATATGTATATGATTCTTAAGGAATTATATGTGGTTCTTATGGACATCATT
66 TACTTGATCCCTAATATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATT
13626 ATATGGCACTACGGTGCAAT
131 ATATGGCACTACGGTGCAAT
13646 TCTAC
1 TCTAC
13651 ACAGCACTTC
Statistics
Matches: 148, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
149 51 0.34
150 97 0.66
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (150 bp):
TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACA
TACTTGATCCCTAATATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATT
ATATGGCACTACGGTGCAAT
Found at i:20555 original size:147 final size:149
Alignment explanation
Indices: 20364--20665 Score: 536
Period size: 148 Copynumber: 2.0 Consensus size: 149
20354 GGGTAGAGGG
* *
20364 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTT-GAAAGACACA
1 TCTACGCGGTCCTTCGGGA-ATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACA
*
20428 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
65 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATT
*
20493 ATATGGCATTACGGTGCAAT
130 ATATGGCACTACGGTGCAAT
20513 TCTACGCGGTCCTTCGGG-ATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACAT
1 TCTACGCGGTCCTTCGGGAATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACAT
*
20577 ACTTGATCCCTAGTATATGTGTATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATTA
66 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATTA
20642 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
20661 TCTAC
1 TCTAC
20666 ACGGCACTTC
Statistics
Matches: 147, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
147 32 0.22
148 97 0.66
149 18 0.12
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (149 bp):
TCTACGCGGTCCTTCGGGAATATATATATTCTGTGGAACATGTGTGAAGTCTTGGAAAGACACAT
ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:22800 original size:14 final size:14
Alignment explanation
Indices: 22781--22809 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22771 AGAGATTTTC
22781 TAAGTTAAATGAAT
1 TAAGTTAAATGAAT
22795 TAAGTTAAATGAAT
1 TAAGTTAAATGAAT
22809 T
1 T
22810 TTAAGATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38
Consensus pattern (14 bp):
TAAGTTAAATGAAT
Found at i:24483 original size:29 final size:29
Alignment explanation
Indices: 24442--24514 Score: 123
Period size: 29 Copynumber: 2.6 Consensus size: 29
24432 AATGAAAATC
*
24442 AAAGTTCA--GCTATGATTGGTAAAATTA
1 AAAGTTCAGTGCTATAATTGGTAAAATTA
24469 AAAGTTCAGTGCTATAATTGGTAAAATTA
1 AAAGTTCAGTGCTATAATTGGTAAAATTA
24498 AAAGTTCAGTGCTATAA
1 AAAGTTCAGTGCTATAA
24515 ACGATATAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
27 8 0.19
29 35 0.81
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (29 bp):
AAAGTTCAGTGCTATAATTGGTAAAATTA
Found at i:26995 original size:182 final size:182
Alignment explanation
Indices: 26463--27301 Score: 971
Period size: 182 Copynumber: 4.6 Consensus size: 182
26453 TGATATAAAT
** * * * *
26463 AAAAAATGTATTTATTTATAACAATATAATAGGTAAAAAAATGATAAAATCGGTCTT-AAAATGA
1 AAAAAATGTATCGATCTATAATAATATAACAGGTAAAAATATGATAAAATCGGT-TTCAAAATGA
* * * * ** * *
26527 CGAAATC-GATAAA-ATATTATCGGATATGTTGAAAGTGTTAATAATTTAATATAAATATTGATA
65 C-AAAACAGGTAAATA-ACTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATTGACA
* *
26590 ATTTCT-GAATTTAAAAGAGAAGAAGTTATAGCGTCTAAAAAGTGTCGATATTTTA
128 CTTT-TGGAATTTAAAAGAGAAGAAGTTATAGCGTCTAAAAAGTGTCGATACTTTA
** * * * * *
26645 TGATAATGTATCGAT-TCATAATAATATAATAGTTAAAAATATGAT--AATCAGTCTCAAAATGA
1 AAAAAATGTATCGATCT-ATAATAATATAACAGGTAAAAATATGATAAAATCGGTTTCAAAATGA
* * * * * *
26707 CAAAACAGATAAATAACTACCAGATATGTTG-AAGTATCGATATTTTAATATAATTATGGACACT
65 CAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATTGACACT
* * * *
26771 TTTGGAATTTAAAAGAGAAGAAATTATAACGTCTATAAAGTGTCGATATTTTA
130 TTTGGAATTTAAAAGAGAAGAAGTTATAGCGTCTAAAAAGTGTCGATACTTTA
* * *
26824 AAAAAATATATTGATCTATAATAATATAACAGGTAAAAATATGATAAAATCGGTTTCAAAATGAT
1 AAAAAATGTATCGATCTATAATAATATAACAGGTAAAAATATGATAAAATCGGTTTCAAAATGAC
* * * *
26889 AAAACCGGTAAA-ACGCTACCAGATATGTTGAAAGTGTTGATAATTTAATATAAGTATTGACACT
66 AAAACAGGTAAATA-ACTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATTGACACT
*
26953 TTCT-GAATTTAAAAGAGAAGAAGTTATAGCGTCTAAAAAGTGTCGACACTTTA
130 TT-TGGAATTTAAAAGAGAAGAAGTTATAGCGTCTAAAAAGTGTCGATACTTTA
** * * * * * *
27006 TGAAAATGTATCGATCCATAATAATATAACAGTTAAAAATATGACAAAACCGG-TCCCAAATGAC
1 AAAAAATGTATCGATCTATAATAATATAACAGGTAAAAATATGATAAAATCGGTTTCAAAATGAC
* * *
27070 AAAACATGTAAATAACTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTT
66 AAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATTGACACTT
* *
27135 TTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA
131 TTGGAATTTAAAAGAGAAGAAGTTATAGCGTCTAAAAAGTGTCGATACTTTA
* * * * ** *
27187 AAAAAATATATCGATCCATAACAATATAACAGGTAAAAATATGACAAACCCGGTCTCAAAATGAC
1 AAAAAATGTATCGATCTATAATAATATAACAGGTAAAAATATGATAAAATCGGTTTCAAAATGAC
* *
27252 AAAACAGGTAAATAACTACCGGATATGTTAAAAGTGTCGATACTTTAATA
66 AAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATAATTTAATA
27302 AGTACGCATA
Statistics
Matches: 563, Mismatches: 80, Indels: 28
0.84 0.12 0.04
Matches are distributed among these distances:
178 1 0.00
179 114 0.20
180 36 0.06
181 200 0.36
182 211 0.37
183 1 0.00
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.30
Consensus pattern (182 bp):
AAAAAATGTATCGATCTATAATAATATAACAGGTAAAAATATGATAAAATCGGTTTCAAAATGAC
AAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATTGACACTT
TTGGAATTTAAAAGAGAAGAAGTTATAGCGTCTAAAAAGTGTCGATACTTTA
Found at i:27153 original size:181 final size:182
Alignment explanation
Indices: 26480--27301 Score: 987
Period size: 181 Copynumber: 4.5 Consensus size: 182
26470 GTATTTATTT
* * * * * * * *
26480 ATAACAATATAATAGGTAAAAAAATGATAAAATCGGTCTTAAAATGACGAAATC-GATAAA-ATA
1 ATAATAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGAC-AAAACAGGTAAATA-A
* * ** * * *
26543 TTATCGGATATGTTGAAAGTGTTAATAATTTAATATAAATATTGATAATTTCTGAATTTAAAAGA
64 CTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATTGACACTTTCTGAATTTAAAAGA
* ** * * *
26608 GAAGAAGTTATAGCGTCTAAAAAGTGTCGATATTTTATGATAATGTATCGATTC
129 GAAGAAGTTATAGCGTCTAAAAAGTGTCGATACTTTAAAAAAATATATCGATCC
* * * * * *
26662 ATAATAATATAATAGTTAAAAATATG--ATAATCAGTCTCAAAATGACAAAACAGATAAATAACT
1 ATAATAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAATAACT
* * * * *
26725 ACCAGATATGTTG-AAGTATCGATATTTTAATATAATTATGGACACTTT-TGGAATTTAAAAGAG
66 ACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATTGACACTTTCT-GAATTTAAAAGAG
* * * * * *
26788 AAGAAATTATAACGTCTATAAAGTGTCGATATTTTAAAAAAATATATTGATCT
130 AAGAAGTTATAGCGTCTAAAAAGTGTCGATACTTTAAAAAAATATATCGATCC
* * * * * *
26841 ATAATAATATAACAGGTAAAAATATGATAAAATCGGTTTCAAAATGATAAAACCGGTAAA-ACGC
1 ATAATAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAATA-AC
* *
26905 TACCAGATATGTTGAAAGTGTTGATAATTTAATATAAGTATTGACACTTTCTGAATTTAAAAGAG
65 TACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATTGACACTTTCTGAATTTAAAAGAG
* ** *
26970 AAGAAGTTATAGCGTCTAAAAAGTGTCGACACTTTATGAAAATGTATCGATCC
130 AAGAAGTTATAGCGTCTAAAAAGTGTCGATACTTTAAAAAAATATATCGATCC
* * *
27023 ATAATAATATAACAGTTAAAAATATGACAAAACCGGTC-CCAAATGACAAAACATGTAAATAACT
1 ATAATAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAATAACT
* *
27087 ACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT-TGGAATTTAAAAGAG
66 ACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATTGACACTTTCT-GAATTTAAAAGAG
* *
27151 AAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAATATATCGATCC
130 AAGAAGTTATAGCGTCTAAAAAGTGTCGATACTTTAAAAAAATATATCGATCC
* *
27204 ATAACAATATAACAGGTAAAAATATGACAAACCCGGTCTCAAAATGACAAAACAGGTAAATAACT
1 ATAATAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAATAACT
* *
27269 ACCGGATATGTTAAAAGTGTCGATACTTTAATA
66 ACCGGATATGTTGAAAGTGTCGATAATTTAATA
27302 AGTACGCATA
Statistics
Matches: 552, Mismatches: 77, Indels: 22
0.85 0.12 0.03
Matches are distributed among these distances:
178 1 0.00
179 111 0.20
180 38 0.07
181 201 0.36
182 200 0.36
183 1 0.00
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.30
Consensus pattern (182 bp):
ATAATAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAATAACT
ACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATTGACACTTTCTGAATTTAAAAGAGA
AGAAGTTATAGCGTCTAAAAAGTGTCGATACTTTAAAAAAATATATCGATCC
Found at i:27713 original size:19 final size:19
Alignment explanation
Indices: 27691--27741 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
27681 TACTTTTAGT
*
27691 TGATATTATATGTAGAAAA
1 TGATATTATAGGTAGAAAA
*
27710 TGATATTATAGGTATAAAA
1 TGATATTATAGGTAGAAAA
*
27729 TGATATTTTAGGT
1 TGATATTATAGGT
27742 TGTATAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (19 bp):
TGATATTATAGGTAGAAAA
Found at i:27749 original size:22 final size:20
Alignment explanation
Indices: 27691--27749 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
27681 TACTTTTAGT
*
27691 TGATATTATA-TGTAGAAAA
1 TGATATTATAGTGTATAAAA
27710 TGATATTATAG-GTATAAAA
1 TGATATTATAGTGTATAAAA
*
27729 TGATATTTTAGGTTGTATAAA
1 TGATATTATA-G-TGTATAAA
27750 TGTGTCGACA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 26 0.76
20 1 0.03
22 7 0.21
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.41
Consensus pattern (20 bp):
TGATATTATAGTGTATAAAA
Found at i:30876 original size:13 final size:13
Alignment explanation
Indices: 30858--30883 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
30848 TCCAAATGTC
30858 ACTAACATAATTG
1 ACTAACATAATTG
30871 ACTAACATAATTG
1 ACTAACATAATTG
30884 TCATCATGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
ACTAACATAATTG
Found at i:31835 original size:199 final size:199
Alignment explanation
Indices: 31120--32604 Score: 2326
Period size: 199 Copynumber: 7.5 Consensus size: 199
31110 TTATGTGTTA
* * * *
31120 ATACATTTATAAGAAGTGTCGAT-CCAAAAAAATCGAAACCTATAATTATAATATAATAGGTAAA
1 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
* **
31184 TTAACAATGTAACCGGTCTAAATATACCAATTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
66 TTAACAATTTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
* *
31249 CAAA-AAAACAAGTGTCGATACTTTTGGTCTAGAATGTATTTCAAAACCAAGTACACTAAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
31313 GTCG
196 GTCG
31317 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
1 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
* * * *
31382 TTAACAATTTAACCGGTCTAAATATACCAGTTTTTGAGAAAATAGATGTACAAAAAGTATCGATA
66 TTAACAATTTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
* * *
31447 CAAATACAACAAGTGTCGATACTTTTGGTCTAAAATGTATTTCAAAACCAAGTGCACTAAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
31512 GTCG
196 GTCG
* * * * * *
31516 ATACATTTATAAAGAAGTGTCAATCCTAGAAACATCGAAATCCATAATTATAATTTAATAGGTAA
1 ATACATTTAT-AAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAA
* * * *
31581 ATTAGCAATGTAACTGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGAC
65 ATTAACAATTTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGAC
*
31646 ACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTTTTTCAAAACCAAGTGCACTAAAAAG
130 ACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAG
*
31711 TGTAG
195 TGTCG
*
31716 ATACATTTATTAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
1 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
* * *
31781 TTAACAATTTAACTGGTCTAAATATATCGGTTTTTGAGAAAACAGGTATACAAAAAGTATCGACA
66 TTAACAATTTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
* *
31846 CAAATACAACAAGTGACGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
31911 GTCG
196 GTCG
* *
31915 ATACATTTATAAAGAAGTGTCGATCCCAGAAACATCGAAACTCATAATTATGATGTAATAGGTAA
1 ATACATTTAT-AAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAA
* * * * * **
31980 ATTAACAATTTAACCGGTATAACTATATCGATTTTTGAGAAAATAGGTGTACAAAAAGTATATAC
65 ATTAACAATTTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGAC
* *
32045 ACAAATAAAACAAGTGTCGATACTTTTGGTCCAGATTGTATTCCAAAACCAAGTGCACTAAAAAG
130 ACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAG
32110 TGTCG
195 TGTCG
*
32115 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACTCATAATTATGATGTAATAGGTAAA
1 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
* * *
32180 TTAACAATTTAACCGGTCTAAATATACTGGTTTTTTAGAAAAGAGGTGTACAAAAAGTATCGACA
66 TTAACAATTTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
* * ** *
32245 TAACTAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCTGAACCAAGTGCACGAAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
32310 GTCG
196 GTCG
* *
32314 ATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGAAGTAATAGGTAAA
1 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
* * * * *
32379 TTAACAATTTAACCGGTATAACTATATCGATTTTTGAGAAAATAGGTGTACAAAAAGTATCGACA
66 TTAACAATTTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
* **
32444 CAAATAAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCACGGAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
* *
32509 ATCA
196 GTCG
* *
32513 ATACATTTATAACAAGTGTCGATCCCAGAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
1 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
32578 TTAACAATTTAACCGGTCTAAATATAC
66 TTAACAATTTAACCGGTCTAAATATAC
32605 TTTTTGTCCA
Statistics
Matches: 1184, Mismatches: 100, Indels: 6
0.92 0.08 0.00
Matches are distributed among these distances:
197 23 0.02
198 101 0.09
199 694 0.59
200 366 0.31
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (199 bp):
ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
TTAACAATTTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
GTCG
Found at i:31888 original size:399 final size:396
Alignment explanation
Indices: 31120--32604 Score: 2323
Period size: 399 Copynumber: 3.7 Consensus size: 396
31110 TTATGTGTTA
* *
31120 ATACATTTATAAGAAGTGTCGAT-CCAAAAAAATCGAAACCTATAATTATAATATAATAGGTAAA
1 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACC-ATAATTATAATGTAATAGGTAAA
* *
31184 TTAACAATGTAACCGGTCTAAATATACCAATTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
65 TTAACAATGTAACCGGTATAAATATACCGATTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
* *
31249 CAAA-AAAACAAGTGTCGATACTTTTGGTCTAGAATGTATTTCAAAACCAAGTACACTAAAAAGT
130 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
*
31313 GTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGG
195 GTAGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGG
* * *
31378 TAAATTAACAATTTAACCGGTCTAAATATACCAGTTTTTGAGAAAATAGATGTACAAAAAGTATC
260 TAAATTAACAATTTAACCGGTCTAAATATA-CGGTTTTTGAGAAAACAGGTGTACAAAAAGTATC
* * *
31443 GATACAAATACAACAAGTGTCGATACTTTTGGTCTAAAATGTATTTCAAAACCAAGTGCACTAAA
324 GACACAAATACAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAA
31508 AAGTGTCG
389 AAGTGTCG
* * * *
31516 ATACATTTATAAAGAAGTGTCAATCCTAGAAACATCGAAATCCATAATTATAATTTAATAGGTAA
1 ATACATTTAT-AAGAAGTGTCGATCCCAAAAACATCGAAA-CCATAATTATAATGTAATAGGTAA
* * *
31581 ATTAGCAATGTAACTGGTCTAAATATACC-AGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGA
64 ATTAACAATGTAACCGGTATAAATATACCGA-TTTTTGAGAAAACAGGTGTACAAAAAGTATCGA
*
31645 CACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTTTTTCAAAACCAAGTGCACTAAAAA
128 CACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAA
*
31710 GTGTAGATACATTTATTAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATA
193 GTGTAGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATA
* *
31775 GGTAAATTAACAATTTAACTGGTCTAAATATATCGGTTTTTGAGAAAACAGGTATACAAAAAGTA
258 GGTAAATTAACAATTTAACCGGTCTAAATATA-CGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
*
31840 TCGACACAAATACAACAAGTGACGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
322 TCGACACAAATACAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
31905 AAAAGTGTCG
387 AAAAGTGTCG
* *
31915 ATACATTTATAAAGAAGTGTCGATCCCAGAAACATCGAAACTCATAATTATGATGTAATAGGTAA
1 ATACATTTAT-AAGAAGTGTCGATCCCAAAAACATCGAAAC-CATAATTATAATGTAATAGGTAA
* * * * **
31980 ATTAACAATTTAACCGGTATAACTATATCGATTTTTGAGAAAATAGGTGTACAAAAAGTATATAC
64 ATTAACAATGTAACCGGTATAAATATACCGATTTTTGAGAAAACAGGTGTACAAAAAGTATCGAC
* *
32045 ACAAATAAAACAAGTGTCGATACTTTTGGTCCAGATTGTATTCCAAAACCAAGTGCACTAAAAAG
129 ACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAG
* *
32110 TGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACTCATAATTATGATGTAATAG
194 TGTAGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAG
* *
32175 GTAAATTAACAATTTAACCGGTCTAAATATACTGGTTTTTTAGAAAAGAGGTGTACAAAAAGTAT
259 GTAAATTAACAATTTAACCGGTCTAAATATAC-GGTTTTTGAGAAAACAGGTGTACAAAAAGTAT
* * * ** *
32240 CGACATAACTAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCTGAACCAAGTGCACGAA
323 CGACACAAATACAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAA
32305 AAAGTGTCG
388 AAAGTGTCG
*
32314 ATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGAA-GTAATAGGTAA
1 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAA-CCATAATTAT-AATGTAATAGGTAA
* * * *
32378 ATTAACAATTTAACCGGTATAACTATATCGATTTTTGAGAAAATAGGTGTACAAAAAGTATCGAC
64 ATTAACAATGTAACCGGTATAAATATACCGATTTTTGAGAAAACAGGTGTACAAAAAGTATCGAC
* **
32443 ACAAATAAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCACGGAAAAG
129 ACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAG
* * *
32508 TATCA-ATACATTTATAACAAGTGTCGATCCCAGAAACATCGAAACCCATAATTATGATGTAATA
194 TGT-AGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATA
32572 GGTAAATTAACAATTTAACCGGTCTAAATATAC
258 GGTAAATTAACAATTTAACCGGTCTAAATATAC
32605 TTTTTGTCCA
Statistics
Matches: 1011, Mismatches: 67, Indels: 20
0.92 0.06 0.02
Matches are distributed among these distances:
396 10 0.01
397 13 0.01
398 362 0.36
399 625 0.62
400 1 0.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (396 bp):
ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCATAATTATAATGTAATAGGTAAAT
TAACAATGTAACCGGTATAAATATACCGATTTTTGAGAAAACAGGTGTACAAAAAGTATCGACAC
AAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGTG
TAGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGT
AAATTAACAATTTAACCGGTCTAAATATACGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGA
CACAAATACAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAA
GTGTCG
Found at i:32277 original size:598 final size:598
Alignment explanation
Indices: 31120--32604 Score: 2377
Period size: 598 Copynumber: 2.5 Consensus size: 598
31110 TTATGTGTTA
* * * *
31120 ATACATTTATAAGAAGTGTCGAT-CCAAAAAAATCGAAACCTATAATTATAATATAATAGGTAAA
1 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
* * *
31184 TTAACAATGTAACCGGTCTAAATATACCAATTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
66 TTAACAATTTAACCGGTCTAAATATATCGATTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
* *
31249 CAAA-AAAACAAGTGTCGATACTTTTGGTCTAGAATGTATTTCAAAACCAAGTACACTAAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
*
31313 GTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGG
196 GTCGATACATTTATAAGAAGTGTCGATCCCAGAAACATCGAAACCCATAATTATGATGTAATAGG
*
31378 TAAATTAACAATTTAACCGGTCTAAATATACCAGTTTTTGAGAAAATAGATGTACAAAAAGTATC
261 TAAATTAACAATTTAACCGGTCTAAATATACCAGTTTTTGAGAAAATAGATGTACAAAAAGTATA
* * * *
31443 GATACAAATACAACAAGTGTCGATACTTTTGGTCTAAAATGTATTTCAAAACCAAGTGCACTAAA
326 GACACAAATAAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTCCAAAACCAAGTGCACTAAA
* * *
31508 AAGTGTCGATACATTTATAAAGAAGTGTCAATCCTAGAAACATCGAAATCCATAATTATAATTTA
391 AAGTGTCGATACATTTATAAAGAAGTGTCAATCCCAAAAACATCGAAATCCATAATTATAATGTA
* *
31573 ATAGGTAAATTAGCAATGTAACTGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAA
456 ATAGGTAAATTAACAATGTAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAA
*
31638 GTATCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTTTTTCAAAACCAAGTGCA
521 GTATCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCA
*
31703 CTAAAAAGTGTAG
586 CGAAAAAGTGTAG
*
31716 ATACATTTATTAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
1 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
* * *
31781 TTAACAATTTAACTGGTCTAAATATATCGGTTTTTGAGAAAACAGGTATACAAAAAGTATCGACA
66 TTAACAATTTAACCGGTCTAAATATATCGATTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
* *
31846 CAAATACAACAAGTGACGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
*
31911 GTCGATACATTTATAAAGAAGTGTCGATCCCAGAAACATCGAAACTCATAATTATGATGTAATAG
196 GTCGATACATTTAT-AAGAAGTGTCGATCCCAGAAACATCGAAACCCATAATTATGATGTAATAG
* * * *
31976 GTAAATTAACAATTTAACCGGTATAACTATATC-GATTTTTGAGAAAATAGGTGTACAAAAAGTA
260 GTAAATTAACAATTTAACCGGTCTAAATATACCAG-TTTTTGAGAAAATAGATGTACAAAAAGTA
* * *
32040 TATACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGATTGTATTCCAAAACCAAGTGCACTA
324 TAGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTCCAAAACCAAGTGCACTA
* *
32105 AAAAGTGTCGATACATTTAT-AAGAAGTGTCGATCCCAAAAACATCGAAA-CTCATAATTATGAT
389 AAAAGTGTCGATACATTTATAAAGAAGTGTCAATCCCAAAAACATCGAAATC-CATAATTATAAT
* ** * *
32168 GTAATAGGTAAATTAACAATTTAACCGGTCTAAATATACTGGTTTTTTAGAAAAGAGGTGTACAA
453 GTAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAA
* * **
32233 AAAGTATCGACATAACTAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCTGAACCAAGT
518 AAAGTATCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGT
*
32298 GCACGAAAAAGTGTCG
583 GCACGAAAAAGTGTAG
* *
32314 ATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGAAGTAATAGGTAAA
1 ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
* * *
32379 TTAACAATTTAACCGGTATAACTATATCGATTTTTGAGAAAATAGGTGTACAAAAAGTATCGACA
66 TTAACAATTTAACCGGTCTAAATATATCGATTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
* **
32444 CAAATAAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCACGGAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
* * *
32509 ATCAATACATTTATAACAAGTGTCGATCCCAGAAACATCGAAACCCATAATTATGATGTAATAGG
196 GTCGATACATTTATAAGAAGTGTCGATCCCAGAAACATCGAAACCCATAATTATGATGTAATAGG
32574 TAAATTAACAATTTAACCGGTCTAAATATAC
261 TAAATTAACAATTTAACCGGTCTAAATATAC
32605 TTTTTGTCCA
Statistics
Matches: 815, Mismatches: 69, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
596 22 0.03
597 178 0.22
598 432 0.53
599 183 0.22
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (598 bp):
ATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
TTAACAATTTAACCGGTCTAAATATATCGATTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
GTCGATACATTTATAAGAAGTGTCGATCCCAGAAACATCGAAACCCATAATTATGATGTAATAGG
TAAATTAACAATTTAACCGGTCTAAATATACCAGTTTTTGAGAAAATAGATGTACAAAAAGTATA
GACACAAATAAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTCCAAAACCAAGTGCACTAAA
AAGTGTCGATACATTTATAAAGAAGTGTCAATCCCAAAAACATCGAAATCCATAATTATAATGTA
ATAGGTAAATTAACAATGTAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAA
GTATCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCA
CGAAAAAGTGTAG
Found at i:32636 original size:140 final size:139
Alignment explanation
Indices: 32462--32744 Score: 415
Period size: 140 Copynumber: 2.0 Consensus size: 139
32452 ACAAGTGTCG
* *
32462 ATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCACGGA-AAAGTATCAATACATTTATAAC
1 ATACTTTTGGTCCAAAATGTATTTAAAAACCAAGTGCAC-AACAAAGTATCAATACATTTATAAC
* * *
32526 AAGTGTCGATCCCAGAAACATCGAAACCCATAATTATGATGTAATAGGTAAATTAACAATTTAAC
65 AAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAATGTAAC
* *
32591 CGGTCTAAAT
130 CGGTATAAAA
* * * * * *
32601 ATACTTTTTGTCCAGAGTGTATTTTAAAAACCAAGTGCACAACAAAGTTTCGATACATTTATAAT
1 ATACTTTTGGTCCAAAATGTA-TTTAAAAACCAAGTGCACAACAAAGTATCAATACATTTATAAC
*
32666 ATGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAATGTAAC
65 AAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAATGTAAC
32731 CGGTATAAAA
130 CGGTATAAAA
32741 ATAC
1 ATAC
32745 CGGTTTAATT
Statistics
Matches: 128, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
139 19 0.15
140 109 0.85
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (139 bp):
ATACTTTTGGTCCAAAATGTATTTAAAAACCAAGTGCACAACAAAGTATCAATACATTTATAACA
AGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAATGTAACC
GGTATAAAA
Found at i:33115 original size:15 final size:15
Alignment explanation
Indices: 33095--33123 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33085 TCTTTCTCAA
33095 AGCTCTTCTCAACCC
1 AGCTCTTCTCAACCC
33110 AGCTCTTCTCAACC
1 AGCTCTTCTCAACC
33124 ACAACCTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.45, G:0.07, T:0.28
Consensus pattern (15 bp):
AGCTCTTCTCAACCC
Found at i:35691 original size:24 final size:24
Alignment explanation
Indices: 35664--35710 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
35654 TTTCATTTAT
35664 AATTAGAGTTTGAATTTAAATTTC
1 AATTAGAGTTTGAATTTAAATTTC
* * *
35688 AATTTGAGTTTGAGTTTGAATTT
1 AATTAGAGTTTGAATTTAAATTT
35711 AAATGTAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.02, G:0.17, T:0.49
Consensus pattern (24 bp):
AATTAGAGTTTGAATTTAAATTTC
Found at i:36250 original size:199 final size:198
Alignment explanation
Indices: 35927--36482 Score: 706
Period size: 199 Copynumber: 2.8 Consensus size: 198
35917 ATGTATTTCC
* * *
35927 AAACCAAGTGCACGAAAAAAGTGTCGATACATTTATAACAAGTGTCTATACTAAAAACATCGAAA
1 AAACCAAGTGCAC--AAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAA
** * * *
35992 TACATAGA-TATAATGTAATAGGTAAAATAACAATGTAACCGGCCTAAATATATCGGTTTTTGAG
64 CCCATA-ATTATAATGTAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAG
* * * * **
36056 AAAATAAGTATACATAAAGTATCGACACAAATACAATAAGTGTCGA-TCTTTTTGTCCAGCGTAT
128 AAAATAGGTATACATAAAGTATCGACACAAATAAAATAAGTGTCGATTCGTTTGGTCCAGAATAT
36120 ATTTTAA
193 A-TTTAA
*
36127 AAATCAAGTGCACAACAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAC
1 AAACCAAGTGCACAA-AAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAC
* *
36192 CCATAATTATGAA-GTAATAGGTAAATTAACAATTTAACTGGTCTAAATATACCGGTTTTTGAGA
65 CCATAATTAT-AATGTAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAGA
* * * *
36256 AAACAGGTGTACA-AAGAGTATCGACATAAATAAAATAAGTGTCGATTCGTTTGGTCCAGAATGT
129 AAATAGGTATACATAA-AGTATCGACACAAATAAAATAAGTGTCGATTCGTTTGGTCCAGAATAT
*
36320 ATTTCA
193 ATTTAA
* *
36326 AAACCAAGTGCAGTAAAAAGTGTCGATACATTTATAATAAGTGTCGATCCCAAAAACATCGAAAC
1 AAACCAAGTGCA-CAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAC
* ** * * *
36391 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCAATTTAAATTTACCAGTTTTATGAGA
65 CCATAATTATAATGTAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTT-TGAGA
* * *
36456 AAATAGGTCTAAATAATGTATCGACAC
129 AAATAGGTATACATAAAGTATCGACAC
36483 TTTATTTATT
Statistics
Matches: 309, Mismatches: 38, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
198 7 0.02
199 246 0.80
200 54 0.17
201 2 0.01
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (198 bp):
AAACCAAGTGCACAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACC
CATAATTATAATGTAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAGAAA
ATAGGTATACATAAAGTATCGACACAAATAAAATAAGTGTCGATTCGTTTGGTCCAGAATATATT
TAA
Found at i:36605 original size:201 final size:197
Alignment explanation
Indices: 36341--36910 Score: 594
Period size: 201 Copynumber: 2.8 Consensus size: 197
36331 AAGTGCAGTA
* * * * *
36341 AAAAGTGTCGATACATTTA-TAATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATG
1 AAAA-TGTCGATACATTTATTAA-AAGTATCGACCCCAAATACATCGAGA-CCAAAATTATAATG
* *
36405 TAATAGGTAAATTTACAATGTAACCAATTTAAATTTACCAGTTTTATGAGAAAATAGGTCTAAAT
63 TAATAGGTCAATTTACAATGTAACCAGTTTAAATTTACCAGTTTTATGAGAAAATAGGTCTAAAT
** * **
36470 AATGTATCGACACTTTATTTATTTGTGTCGATACTTTTTATCCATAATGAATTCTCAAACTTTGT
128 AATGTATCGACACTTT-TAAATTTGTGTCGATACTTTTTAT-CATAATGAATGC-CAAACGATGT
* *
36535 GCACGCTT
190 CCACGCAT
* *
36543 AAAATGTCGATACATTTATTAAAAGTATCAACCCCAAATACATAGAGACCGAAAATTATAATGTA
1 AAAATGTCGATACATTTATTAAAAGTATCGACCCCAAATACATCGAGACC-AAAATTATAATGTA
* * * * * *
36608 ATAGGTCACTTTACAATG-AAACATGTTTAAATATACCGGTTTTATGAGTAAATAGGTCTACATA
65 ATAGGTCAATTTACAATGTAACCA-GTTTAAATTTACCAGTTTTATGAGAAAATAGGTCTAAATA
* * * * * *
36672 ATGTATCGATACTTTGTACATTTATGTCGATACTTATGT-TCATAATTAATGCCAACCGATGTCC
129 ATGTATCGACACTTT-TAAATTTGTGTCGATACTT-TTTATCATAATGAATGCCAAACGATGTCC
36736 ACGCAT
192 ACGCAT
* * * * *
36742 AAAGTTTTGATACATTTATAAAAAGTATCGGCCCCAAATACATCGAGACCAGAAATTATAATGTA
1 AAAATGTCGATACATTTATTAAAAGTATCGACCCCAAATACATCGAGACCA-AAATTATAATGTA
* * * **
36807 ATAGGTCGATTTACAATGTAACCGGTTGAAATTTTA-CAGGTGTAAAT-AGAAAATAGGTC-AAC
65 ATAGGTCAATTTACAATGTAACCAGTTTAAA-TTTACCA-GT-TTTATGAGAAAATAGGTCTAA-
* *
36869 ATAATGTTTCGACACTTTTAAAATTTGTGTCGACACTTTTTA
126 ATAATGTATCGACACTTTT-AAATTTGTGTCGATACTTTTTA
36911 AAATTCGTGT
Statistics
Matches: 304, Mismatches: 52, Indels: 26
0.80 0.14 0.07
Matches are distributed among these distances:
198 1 0.00
199 96 0.32
200 66 0.22
201 132 0.43
202 9 0.03
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.34
Consensus pattern (197 bp):
AAAATGTCGATACATTTATTAAAAGTATCGACCCCAAATACATCGAGACCAAAATTATAATGTAA
TAGGTCAATTTACAATGTAACCAGTTTAAATTTACCAGTTTTATGAGAAAATAGGTCTAAATAAT
GTATCGACACTTTTAAATTTGTGTCGATACTTTTTATCATAATGAATGCCAAACGATGTCCACGC
AT
Found at i:36912 original size:22 final size:22
Alignment explanation
Indices: 36877--36937 Score: 106
Period size: 22 Copynumber: 2.8 Consensus size: 22
36867 ACATAATGTT
*
36877 TCGACAC-TTTTAAAATTTGTG
1 TCGACACTTTTTAAAATTCGTG
36898 TCGACACTTTTTAAAATTCGTG
1 TCGACACTTTTTAAAATTCGTG
36920 TCGACACTTTTTAAAATT
1 TCGACACTTTTTAAAATT
36938 ACTCGTGTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
21 7 0.18
22 31 0.82
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (22 bp):
TCGACACTTTTTAAAATTCGTG
Found at i:39163 original size:2 final size:2
Alignment explanation
Indices: 39156--39180 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
39146 GATTGGGACG
39156 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
39181 TATTTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:40699 original size:161 final size:163
Alignment explanation
Indices: 40506--41125 Score: 531
Period size: 176 Copynumber: 3.6 Consensus size: 163
40496 GTAAATTAAC
*
40506 AGTGTCGATATTTTAATATAAGTATCGACACTTTTGGAAATAAAAAGAGAAGAAGTTATAGAGCC
1 AGTGTCGATAATTTAATATAAGTATCGACACTTTTGGAAAT-AAAAGAGAAGAAGTTATAGAGCC
* *
40571 TAAAAAGTGTCGATACTTTAAAAAATGTATTGATCCATAACAATATTACAGGTAAAAATATGACA
65 TAAAAAGTGTCGATACTTTAAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACA
*
40636 AAACCGGT-AAAAC-G-CTACCGGATATGTTGAA
130 AAACCGGTAAAAACAGACTACCAGATATGTTGAA
* * * *
40667 AGTGTCGATAATTTAATATAAATATCGACACTTTCT-GAATTTAAAAGAGAATAAGTTATAGCGC
1 AGTGTCGATAATTTAATATAAGTATCGACACTTT-TGGAA-ATAAAAGAGAAGAAGTTATAGAGC
* * * *
40731 CTAAAAAGTGTCGACACTTTATGAAAATGTATCGATCTATAACAATATAACAGCTAAAAATATGA
64 CTAAAAAGTGTCGATACTTTA-AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGA
**
40796 CAATTCCGGTCTCAAAATGACAAAACAGGTAAATAACTACCAGATATGTTGAA
128 CAAAACCGG--------T-A-AAAACA-G------ACTACCAGATATGTTGAA
* * * ** *
40849 AGTGTCGATACTTTAATATAGGCATCGACAC-TTTGG-AAT-TTA-A-AAGAAGTTATAGTGCCT
1 AGTGTCGATAATTTAATATAAGTATCGACACTTTTGGAAATAAAAGAGAAGAAGTTATAGAGCCT
*
40909 ATAAAGTGTCGATACTTTAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACA
66 AAAAAGTGTCGATACTTT-AAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACA
*
40974 AAACCGGTCTCAAAATGACAAAACCGATAAAACGCTACCGGATATGTTGAA
130 AAACCGG--T-AAAA--AC---A--G-----A--CTACCAGATATGTTGAA
** * *
41025 AGTGTCGATAATTTAATATAAGTATATACACTTTCT-GAATTTAAAAGAGAAGAAGTTATAGCGC
1 AGTGTCGATAATTTAATATAAGTATCGACACTTT-TGGAA-ATAAAAGAGAAGAAGTTATAGAGC
* * *
41089 TTAAAAAGTGTCGACACTTTATGAAAATGTATCGATC
64 CTAAAAAGTGTCGATACTTTA-AAAAATGTATCGATC
41126 GATCAACATA
Statistics
Matches: 368, Mismatches: 50, Indels: 61
0.77 0.10 0.13
Matches are distributed among these distances:
161 75 0.20
162 47 0.13
169 3 0.01
170 3 0.01
171 2 0.01
173 5 0.01
174 5 0.01
175 2 0.01
176 120 0.33
177 5 0.01
178 3 0.01
179 2 0.01
180 3 0.01
181 5 0.01
182 88 0.24
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.28
Consensus pattern (163 bp):
AGTGTCGATAATTTAATATAAGTATCGACACTTTTGGAAATAAAAGAGAAGAAGTTATAGAGCCT
AAAAAGTGTCGATACTTTAAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAA
AACCGGTAAAAACAGACTACCAGATATGTTGAA
Found at i:40967 original size:176 final size:178
Alignment explanation
Indices: 40630--41125 Score: 701
Period size: 176 Copynumber: 2.8 Consensus size: 178
40620 AGGTAAAAAT
*
40630 ATGACAAAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAATATCGA
1 ATGACAAAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGA
40695 CACTTTCTGAATTTAAAAGAGAATAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATG
66 CACTTTCTGAATTTAAAA-AG---AAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATG
* **
40760 TATCGATCTATAACAATATAACAGCTAAAAATATGACAATTCCGGTCTCAAA
127 TATCGATCCATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAA
* * * * * *
40812 ATGACAAAACAGGTAAATA-ACTACCAGATATGTTGAAAGTGTCGATACTTTAATATAGGCATCG
1 ATGACAAAACCGGTAAA-ACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCG
* * * * **
40876 ACACTTT-GGAATTT-AAAAGAAGTTATAGTGCCTATAAAGTGTCGATACTTTAAAAAAATGTAT
65 ACACTTTCTGAATTTAAAAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTAT
*
40939 CGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAA
130 CGATCCATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAA
* **
40988 ATGACAAAACCGATAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATATA
1 ATGACAAAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGA
*
41053 CACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCTTAAAAAGTGTCGACACTTTATGAAAATG
66 CACTTTCTGAATTT--AA-A-AAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATG
41118 TATCGATC
127 TATCGATC
41126 GATCAACATA
Statistics
Matches: 273, Mismatches: 33, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
175 1 0.00
176 144 0.53
177 6 0.02
179 2 0.01
180 4 0.01
181 7 0.03
182 108 0.40
183 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (178 bp):
ATGACAAAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGA
CACTTTCTGAATTTAAAAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATC
GATCCATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAA
Found at i:41553 original size:23 final size:23
Alignment explanation
Indices: 41497--41553 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
41487 TTTATGAGAA
41497 AATATGTTAATATAAGCGCTACCT
1 AATATGTT-ATATAAGCGCTACCT
* **
41521 ATTACATTATATAAGCGCTACCT
1 AATATGTTATATAAGCGCTACCT
41544 AATATGTTAT
1 AATATGTTAT
41554 TGTACTTGAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
23 22 0.81
24 5 0.19
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (23 bp):
AATATGTTATATAAGCGCTACCT
Found at i:41609 original size:23 final size:23
Alignment explanation
Indices: 41594--41640 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
41584 TATTTTATTT
41594 TATAAGCGCTACCTATTACATTA
1 TATAAGCGCTACCTATTACATTA
* *
41617 TATAAGCGCTACCTAATATATTA
1 TATAAGCGCTACCTATTACATTA
41640 T
1 T
41641 TGTGCTTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (23 bp):
TATAAGCGCTACCTATTACATTA
Found at i:41653 original size:87 final size:87
Alignment explanation
Indices: 41507--41668 Score: 297
Period size: 87 Copynumber: 1.9 Consensus size: 87
41497 AATATGTTAA
*
41507 TATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTC
1 TATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTACTTGATAATATTTC
*
41572 TGGTTAAATGTCTATTTTATTT
66 CGGTTAAATGTCTATTTTATTT
*
41594 TATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTGCTTGATAATATTTC
1 TATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTACTTGATAATATTTC
41659 CGGTTAAATG
66 CGGTTAAATG
41669 ATATAACATA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (87 bp):
TATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTACTTGATAATATTTC
CGGTTAAATGTCTATTTTATTT
Found at i:45037 original size:20 final size:20
Alignment explanation
Indices: 44988--45039 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
44978 CGGTAGGGAA
*
44988 TGCATCGATACACTGTGCAG
1 TGCATCGATGCACTGTGCAG
45008 TGCATCGATGCACTGTGCAG
1 TGCATCGATGCACTGTGCAG
45028 TGCATCGATGCA
1 TGCATCGATGCA
45040 TACCTTCATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (20 bp):
TGCATCGATGCACTGTGCAG
Found at i:45966 original size:103 final size:103
Alignment explanation
Indices: 45784--46006 Score: 376
Period size: 103 Copynumber: 2.2 Consensus size: 103
45774 GTCGAGGGTC
* * *
45784 TATGTGGTCCTTC-GATACATATATGTATTCTTTGGAACATGTGTGAAGTTTGGTGAGACACATA
1 TATGTGGTCCTTCTG-GACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGAGAGACACATA
* *
45848 CTTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
65 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
45887 TATGTGGTCCTTCTGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGAGAGACACATAC
1 TATGTGGTCCTTCTGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGAGAGACACATAC
45952 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
*
45990 TATGTGGTCCTTATGGA
1 TATGTGGTCCTTCTGGA
46007 TATTATTATA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 112 0.99
104 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCTGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGAGAGACACATAC
TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
Found at i:46084 original size:23 final size:23
Alignment explanation
Indices: 46008--46085 Score: 93
Period size: 23 Copynumber: 3.3 Consensus size: 23
45998 CCTTATGGAT
*
46008 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATGTGGCACTACGGTGCA
* * * *
46032 ATTCTACGCGGCACTCCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
*
46055 ATTATATGTGGCACTTCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
46078 ATTATATG
1 ATTATATG
46086 AGCTGTGGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
23 42 0.93
24 3 0.07
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (23 bp):
ATTATATGTGGCACTACGGTGCA
Found at i:51771 original size:103 final size:101
Alignment explanation
Indices: 51589--51801 Score: 336
Period size: 103 Copynumber: 2.1 Consensus size: 101
51579 GAGGGTCTAT
51589 GTGGTCCTTCGGGACATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTAAT
1 GTGGTCCTTCGGGACATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTAAT
* * *
51654 CCTTGGCATATGTATATGATTCTTAAGGAATGATAA
66 CCCTAGCATATGTATATGATTCTTAAAGAATGATAA
* * *
51690 GTGGCCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTG
1 GTGGTCCTTCGGGACATATA--TATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTA
* *
51755 ATCCCTAGTATATGTATATGATTCTTAAAGAATGATAT
64 ATCCCTAGCATATGTATATGATTCTTAAAGAATGATAA
51793 GTGGTCCTT
1 GTGGTCCTT
51802 ATGGACATTA
Statistics
Matches: 101, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 18 0.18
103 83 0.82
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (101 bp):
GTGGTCCTTCGGGACATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTAAT
CCCTAGCATATGTATATGATTCTTAAAGAATGATAA
Found at i:51884 original size:23 final size:23
Alignment explanation
Indices: 51808--51885 Score: 93
Period size: 23 Copynumber: 3.3 Consensus size: 23
51798 CCTTATGGAC
*
51808 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATGTGGCACTACGGTGCA
* * * *
51832 ATTCTACGCGGCACTCCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
*
51855 ATTATATGTGGCACTTCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
51878 ATTATATG
1 ATTATATG
51886 AGCTGTGGTG
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
23 42 0.93
24 3 0.07
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (23 bp):
ATTATATGTGGCACTACGGTGCA
Found at i:55056 original size:20 final size:20
Alignment explanation
Indices: 55033--55081 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
55023 TTGTACTATT
*
55033 TGAATAGTATCGATACTGTA
1 TGAATAGTACCGATACTGTA
55053 TGAATAGTACCGATACTGTA
1 TGAATAGTACCGATACTGTA
*
55073 TGAACAGTA
1 TGAATAGTA
55082 ATGAACAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
TGAATAGTACCGATACTGTA
Found at i:55166 original size:20 final size:20
Alignment explanation
Indices: 55126--55166 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
55116 AAATGGGTAC
*
55126 CGATACTGCTACAGTAGTAT
1 CGATACTGCTACAGTAATAT
*
55146 CGATACTGCTACATTAATAT
1 CGATACTGCTACAGTAATAT
55166 C
1 C
55167 TAGCCCAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.32
Consensus pattern (20 bp):
CGATACTGCTACAGTAATAT
Found at i:57836 original size:20 final size:20
Alignment explanation
Indices: 57797--57868 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
57787 CAAATTTTTT
**
57797 TATGAATAGTATTG-TATTG
1 TATGAATAGTACCGATATTG
57816 TATGAATAGTACCGATATTG
1 TATGAATAGTACCGATATTG
* * *
57836 TATGAAAAGTATCGATAATG
1 TATGAATAGTACCGATATTG
*
57856 TGTGAATAGTACC
1 TATGAATAGTACC
57869 AATGCTCAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 12 0.27
20 32 0.73
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (20 bp):
TATGAATAGTACCGATATTG
Found at i:57942 original size:20 final size:20
Alignment explanation
Indices: 57903--57942 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
57893 AATGGGTACT
*
57903 GATACTGCTACAGTAGTATC
1 GATACTGCTACAGTAATATC
*
57923 GATACTGCTACATTAATATC
1 GATACTGCTACAGTAATATC
57943 AAGCCCAACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (20 bp):
GATACTGCTACAGTAATATC
Found at i:70061 original size:30 final size:26
Alignment explanation
Indices: 70007--70070 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
69997 TTCAAATCTT
70007 CATTGAAGGAATGATTGATTTGCATG
1 CATTGAAGGAATGATTGATTTGCATG
*
70033 CATTGAAGGAATGATTGATTTACATG
1 CATTGAAGGAATGATTGATTTGCATG
* *
70059 CATGGAACGAAT
1 CATTGAAGGAAT
70071 CTGAGGGACA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.34, C:0.09, G:0.25, T:0.31
Consensus pattern (26 bp):
CATTGAAGGAATGATTGATTTGCATG
Found at i:76374 original size:53 final size:49
Alignment explanation
Indices: 76311--76415 Score: 156
Period size: 53 Copynumber: 2.1 Consensus size: 49
76301 CAAAAGATTC
* *
76311 ACTTTTAAATGTTCATGGACTAAAATGTTCCTTTAATAGTATGACTAAAATGA
1 ACTTTCAAATGTTCATGGACTAAAATATT--TTTAATAGT-TGACTAAAA-GA
76364 ACTTTCAAATGTTCATGGACTAAAATATTTTTAATAGTTGACTAAAAGA
1 ACTTTCAAATGTTCATGGACTAAAATATTTTTAATAGTTGACTAAAAGA
76413 ACT
1 ACT
76416 AAGTATAGTA
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
49 5 0.10
50 9 0.18
51 9 0.18
53 27 0.54
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.37
Consensus pattern (49 bp):
ACTTTCAAATGTTCATGGACTAAAATATTTTTAATAGTTGACTAAAAGA
Done.