Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007124.1 Hibiscus syriacus cultivar Beakdansim tig00018613_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 94632
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:1545 original size:34 final size:34
Alignment explanation
Indices: 1475--1545 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 34
1465 TTTTTATGCT
* *
1475 TTTAATTTGTAAACAATTATATAAATATTATGAA
1 TTTAATTTGTAAACAATAATATAAATATTATCAA
* * *
1509 TTTAATTTTTAAAGAA-AATATAAATATTTTACAA
1 TTTAATTTGTAAACAATAATATAAATATTAT-CAA
1543 TTT
1 TTT
1546 GTAATATTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 12 0.39
34 19 0.61
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.46
Consensus pattern (34 bp):
TTTAATTTGTAAACAATAATATAAATATTATCAA
Found at i:1717 original size:19 final size:20
Alignment explanation
Indices: 1683--1750 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
1673 AATCCTATTC
1683 CTGGTAATCTTTTATTTCCA
1 CTGGTAATCTTTTATTTCCA
1703 CTGGTAATC-TTTATTTCCA
1 CTGGTAATCTTTTATTTCCA
1722 CTGGTAATCTTTTATTTCCA
1 CTGGTAATCTTTTATTTCCA
*
1742 CTGATAATC
1 CTGGTAATC
1751 CTACATTCCG
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
19 19 0.41
20 27 0.59
ACGTcount: A:0.22, C:0.21, G:0.10, T:0.47
Consensus pattern (20 bp):
CTGGTAATCTTTTATTTCCA
Found at i:2601 original size:30 final size:31
Alignment explanation
Indices: 2544--2602 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
2534 GTTTCTAAAA
*
2544 TATCATTTTATATAAATTAAAATATTATAAT
1 TATCATTTTATATAAATTAAAAAATTATAAT
*
2575 TATC-TTTTATAT-ATTTAAGAAAATTATA
1 TATCATTTTATATAAATTAA-AAAATTATA
2603 GTCATAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 16 0.64
31 4 0.16
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (31 bp):
TATCATTTTATATAAATTAAAAAATTATAAT
Found at i:2695 original size:16 final size:16
Alignment explanation
Indices: 2674--2729 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
2664 TATTCATTTG
2674 TATTTTATACATTTAA
1 TATTTTATACATTTAA
* ** *
2690 TATTTTAATAAAAATAT
1 TATTTT-ATACATTTAA
2707 TATTTTATACATTTAA
1 TATTTTATACATTTAA
2723 TATTTTA
1 TATTTTA
2730 ATAAAAATAT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
16 19 0.61
17 12 0.39
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (16 bp):
TATTTTATACATTTAA
Found at i:2711 original size:33 final size:33
Alignment explanation
Indices: 2674--2741 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
2664 TATTCATTTG
2674 TATTTTATACATTTAATATTTTAATAAAAATAT
1 TATTTTATACATTTAATATTTTAATAAAAATAT
2707 TATTTTATACATTTAATATTTTAATAAAAATAT
1 TATTTTATACATTTAATATTTTAATAAAAATAT
2740 TA
1 TA
2742 ATTATTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (33 bp):
TATTTTATACATTTAATATTTTAATAAAAATAT
Found at i:2712 original size:17 final size:17
Alignment explanation
Indices: 2690--2741 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
2680 ATACATTTAA
2690 TATTTTAATAAAAATAT
1 TATTTTAATAAAAATAT
* ** *
2707 TATTTT-ATACATTTAA
1 TATTTTAATAAAAATAT
2723 TATTTTAATAAAAATAT
1 TATTTTAATAAAAATAT
2740 TA
1 TA
2742 ATTATTAAAA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
16 12 0.46
17 14 0.54
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (17 bp):
TATTTTAATAAAAATAT
Found at i:2793 original size:16 final size:16
Alignment explanation
Indices: 2689--2804 Score: 50
Period size: 17 Copynumber: 7.2 Consensus size: 16
2679 TATACATTTA
* *
2689 ATATTTTAATAAAAAT
1 ATATTTTAATAATATT
2705 ATTATTTT-ATACAT-TT
1 A-TATTTTAATA-ATATT
2721 AATATTTTAATAAAAATATT
1 -ATATTTTAAT---AATATT
2741 A-ATTATTAA-AATATT
1 ATATT-TTAATAATATT
* * *
2756 -TAATATACAT-ATAAT
1 ATATTTTA-ATAATATT
2771 ATAATTTTAATAATATT
1 AT-ATTTTAATAATATT
2788 ATATTTT--TAATATT
1 ATATTTTAATAATATT
2802 ATA
1 ATA
2805 ATAATATATA
Statistics
Matches: 77, Mismatches: 8, Indels: 32
0.66 0.07 0.27
Matches are distributed among these distances:
14 12 0.16
15 13 0.17
16 19 0.25
17 20 0.26
18 3 0.04
19 7 0.09
20 3 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATTTTAATAATATT
Found at i:6324 original size:24 final size:25
Alignment explanation
Indices: 6286--6359 Score: 82
Period size: 24 Copynumber: 3.0 Consensus size: 25
6276 ACCGATGCAC
*
6286 AAGTAGTGCATCGATACACACGTTA
1 AAGTAATGCATCGATACACACGTTA
*
6311 AAG-AATGCATCGATACACA-G-CA
1 AAGTAATGCATCGATACACACGTTA
* *
6333 CAGGTAGTGCATCGATACACACGTTA
1 -AAGTAATGCATCGATACACACGTTA
6359 A
1 A
6360 TGAAGGTAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
22 1 0.03
23 3 0.08
24 30 0.75
25 5 0.12
26 1 0.03
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (25 bp):
AAGTAATGCATCGATACACACGTTA
Found at i:6958 original size:18 final size:18
Alignment explanation
Indices: 6937--6971 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6927 AGGGATTATC
*
6937 AGTGGTCCTTCGGGACAT
1 AGTGGTCATTCGGGACAT
*
6955 AGTGGTTATTCGGGACA
1 AGTGGTCATTCGGGACA
6972 AATATTCAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.29
Consensus pattern (18 bp):
AGTGGTCATTCGGGACAT
Found at i:19407 original size:17 final size:17
Alignment explanation
Indices: 19385--19477 Score: 91
Period size: 17 Copynumber: 5.5 Consensus size: 17
19375 ATTGTAAAAC
19385 ATCTGATATCTGTAAAT
1 ATCTGATATCTGTAAAT
* *
19402 ATCTGATAACTAT-AAT
1 ATCTGATATCTGTAAAT
19418 CATCTGATATCTGTAAAT
1 -ATCTGATATCTGTAAAT
* * **
19436 ATATGGTAAATGT-AAT
1 ATCTGATATCTGTAAAT
*
19452 AATCTTATATCTGTAAAT
1 -ATCTGATATCTGTAAAT
19470 ATCTGATA
1 ATCTGATA
19478 ACTGAAAATC
Statistics
Matches: 58, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
16 6 0.10
17 46 0.79
18 6 0.10
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.40
Consensus pattern (17 bp):
ATCTGATATCTGTAAAT
Found at i:19427 original size:34 final size:34
Alignment explanation
Indices: 19384--19495 Score: 143
Period size: 34 Copynumber: 3.3 Consensus size: 34
19374 TATTGTAAAA
19384 CATCTGATATCTGTAAATATCTGATAACTATAAT
1 CATCTGATATCTGTAAATATCTGATAACTATAAT
* * * *
19418 CATCTGATATCTGTAAATATATGGTAAATGTAAT
1 CATCTGATATCTGTAAATATCTGATAACTATAAT
* * *
19452 AATCTTATATCTGTAAATATCTGATAACTGAAAAT
1 CATCTGATATCTGTAAATATCTGATAACT-ATAAT
*
19487 CATATGATA
1 CATCTGATA
19496 AATGTAAACA
Statistics
Matches: 63, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
34 54 0.86
35 9 0.14
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.38
Consensus pattern (34 bp):
CATCTGATATCTGTAAATATCTGATAACTATAAT
Found at i:19486 original size:17 final size:17
Alignment explanation
Indices: 19380--19496 Score: 67
Period size: 17 Copynumber: 6.8 Consensus size: 17
19370 TGATTATTGT
* *
19380 AAAACATCTGATATCTG
1 AAAATATCTGATAACTG
*
19397 TAAATATCTGATAACT-
1 AAAATATCTGATAACTG
* *
19413 ATAATCATCTGATATCTG
1 AAAAT-ATCTGATAACTG
* * * *
19431 TAAATATATGGTAAATG
1 AAAATATCTGATAACTG
* * *
19448 -TAATAATCTTATATCTG
1 AAAAT-ATCTGATAACTG
*
19465 TAAATATCTGATAACTG
1 AAAATATCTGATAACTG
*
19482 AAAATCATATGATAA
1 AAAAT-ATCTGATAA
19497 ATGTAAACAT
Statistics
Matches: 72, Mismatches: 23, Indels: 9
0.69 0.22 0.09
Matches are distributed among these distances:
16 6 0.08
17 52 0.72
18 14 0.19
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.36
Consensus pattern (17 bp):
AAAATATCTGATAACTG
Found at i:20304 original size:3 final size:3
Alignment explanation
Indices: 20272--20344 Score: 78
Period size: 3 Copynumber: 24.3 Consensus size: 3
20262 ACTTAAAAAA
* * *
20272 TAT TA- TAT TGT TAT TAT AAT AAT TACT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
*
20317 TAT TAT TAT T-T TAT ATAT TAT AAT TAT T
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT T
20345 TTGTGGGCCA
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
2 4 0.07
3 50 0.83
4 6 0.10
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:22431 original size:6 final size:6
Alignment explanation
Indices: 22417--22472 Score: 60
Period size: 6 Copynumber: 9.2 Consensus size: 6
22407 TATATATATA
* * *
22417 TATTATT TATTTT TATTTT TATTTT TATTTT CT-TTTT TATTTA TATATA
1 TATT-TT TATTTT TATTTT TATTTT TATTTT -TATTTT TATTTT TATTTT
22466 TATTTT T
1 TATTTT T
22473 TATTACCTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
5 1 0.02
6 37 0.86
7 5 0.12
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:22531 original size:3 final size:3
Alignment explanation
Indices: 22523--22577 Score: 51
Period size: 3 Copynumber: 18.7 Consensus size: 3
22513 TTTAATAACC
* * * *
22523 TTA TTA TTA TTCT TTA TTG TTA TTG TTA TTG TTA TT- TTA TTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22568 TT- TTA TTA TT
1 TTA TTA TTA TT
22578 TTCAATTTCT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
2 4 0.10
3 35 0.85
4 2 0.05
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:22536 original size:43 final size:43
Alignment explanation
Indices: 22441--22537 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
22431 ATTTTTATTT
*
22441 TTATTTTCTTTTTTATTTATATATATATTTTTTATTACCTTAA
1 TTATTTTCTTTTTTATTTATATATATATTTTTTATAACCTTAA
* * *
22484 TTTTTTTCTTTTTTATTTAT-TTTCTATTTTTTAATAACCTT-A
1 TTATTTTCTTTTTTATTTATATATATATTTTTT-ATAACCTTAA
22526 TTATTATTCTTT
1 TTATT-TTCTTT
22538 ATTGTTATTG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 15 0.32
43 32 0.68
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.70
Consensus pattern (43 bp):
TTATTTTCTTTTTTATTTATATATATATTTTTTATAACCTTAA
Found at i:22546 original size:42 final size:42
Alignment explanation
Indices: 22466--22546 Score: 94
Period size: 43 Copynumber: 1.9 Consensus size: 42
22456 TTTATATATA
* * * *
22466 TATTTTTTATTACCTTAATTTTTTTCTTTTTTATTTATTTTC
1 TATTTTTTATAACCTTAATTTTATTCTTTATTAGTTATTTTC
22508 TATTTTTTAATAACCTT-ATTATTATTCTTTATT-GTTATT
1 TATTTTTT-ATAACCTTAATT-TTATTCTTTATTAGTTATT
22547 GTTATTGTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
42 16 0.48
43 17 0.52
ACGTcount: A:0.21, C:0.09, G:0.01, T:0.69
Consensus pattern (42 bp):
TATTTTTTATAACCTTAATTTTATTCTTTATTAGTTATTTTC
Found at i:22578 original size:19 final size:18
Alignment explanation
Indices: 22523--22579 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
22513 TTTAATAACC
*
22523 TTATTATTATTCTTTATT
1 TTATTATTATTTTTTATT
* *
22541 GTTATTGTTA-TTGTTATT
1 -TTATTATTATTTTTTATT
22559 TTATTATTATTTTATTATT
1 TTATTATTATTTT-TTATT
22578 TT
1 TT
22580 CAATTTCTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
17 8 0.26
18 8 0.26
19 15 0.48
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (18 bp):
TTATTATTATTTTTTATT
Found at i:22579 original size:8 final size:9
Alignment explanation
Indices: 22523--22577 Score: 51
Period size: 8 Copynumber: 6.2 Consensus size: 9
22513 TTTAATAACC
22523 TTATTATTA
1 TTATTATTA
* *
22532 TTCTTTATTG
1 TT-ATTATTA
*
22542 TTATTGTTA
1 TTATTATTA
*
22551 TTGTTATT-
1 TTATTATTA
22559 TTATTATTA
1 TTATTATTA
22568 TT-TTATTA
1 TTATTATTA
22576 TT
1 TT
22578 TTCAATTTCT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
8 15 0.42
9 14 0.39
10 7 0.19
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (9 bp):
TTATTATTA
Found at i:27344 original size:110 final size:110
Alignment explanation
Indices: 26408--27331 Score: 1434
Period size: 110 Copynumber: 8.4 Consensus size: 110
26398 CTGAGTCTCG
* * * *
26408 TTCAAAGTCAATTTCAACTTCACATCGAATGATATTGGACTCGAGATAACACAAGCTCAACTTCA
1 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCA
* * * *
26473 CAGTGAAGGGGGGACTGACTGTTAACAAACAACTTTTTAGTTTCA
66 CAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCA
* ** *
26518 TTCAGAGTCAATTTCAACTTCACAGCGAAGTATATTACACTCGAGATAACACAAGCTCAACTTCA
1 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCA
*
26583 CAGCGAAGAGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCA
66 CAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCA
** *
26628 TTCAGAGTCAATTTCAACTTCACAATGAATGATATTGGACTCGAGACAACACAAGCTCAACTTCA
1 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCA
26693 CAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCA
66 CAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCA
*
26738 TTCAGAGTCAATTTCAACTTCACAGCGAATGATATTGGACTCGAGACAACACAAGCTCAACTTCA
1 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCA
*
26803 CAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCATTTTCA
66 CAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCA
*
26848 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTAGACTCGAGACAACACAAGCTCAACTTCA
1 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCA
* * *
26913 CAGCGAAGGGGCGATTGAATGTCAACAAACAAATTTTCAGTTTCA
66 CAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCA
* *
26958 TTTAGAGTCAATTTCAACTTCATAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCA
1 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCA
* *
27023 CAACGAAGGGGCGACTGACTGTCAATAAACAACTTTTCAGTTTCA
66 CAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCA
* *
27068 TTCAGAGTCAATTTCAACTTCACAGCAAATGATATTGGACTCGAGACAACACAAGCTCAACTTCA
1 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCA
* *
27133 CAGCGAATGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTTA
66 CAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCA
* ** * * *
27178 TTCAGAGTCAATTTCAACTTCACAACGAAATATATTCGCCTCAAGACAACACAAGCTCAACTTCA
1 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCA
* ** * ** * *
27243 CAGCGAATGGGCGGTTGGCTGTCAACAAACAACTTCCCAATTTTA
66 CAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCA
* *
27288 TTCAGAGCCAATTTCAACTTCACGGCGAAGGATATTGGACTCGA
1 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGA
27332 AACAGTACAA
Statistics
Matches: 749, Mismatches: 65, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
110 749 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (110 bp):
TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCA
CAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCA
Found at i:27730 original size:84 final size:84
Alignment explanation
Indices: 27589--27985 Score: 508
Period size: 84 Copynumber: 4.7 Consensus size: 84
27579 GATATCGTGT
** * * * *
27589 TCATTTGCAATATAGCTCAAGGAAAGAAGGACTATTTGCCAACAAAAGACATTCGAGTTCGACTA
1 TCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* * *
27654 CGCTCAGCTCCAAGGCACA
66 CACTCAACTCAAAGGCACA
* * *
27673 TCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* * *
27738 CGCTCAGCTCCAAGGCACA
66 CACTCAACTCAAAGGCACA
* * * *
27757 TCATTTGCAACATAGCTCAAGTCAAGAAGGGCTATTTGCCAACAAAATACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
27822 CACTCAACTCAAAGGCACA
66 CACTCAACTCAAAGGCACA
* * * *
27841 TCATTTGTAGCATAGCTTAAGGCAAGAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGATTA
1 TCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
*
27906 CACTCAACTTAAAGGCACA
66 CACTCAACTCAAAGGCACA
* * * * * * *
27925 TCATTTACAGCTTAGCTCAAGGCAAGAAGTGATATCTGACAATAAAA-ACCATCGAGTTCGA
1 TCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCGA
27986 TTCCATTCAG
Statistics
Matches: 275, Mismatches: 38, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
83 13 0.05
84 262 0.95
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (84 bp):
TCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
CACTCAACTCAAAGGCACA
Found at i:28309 original size:3 final size:3
Alignment explanation
Indices: 28277--28349 Score: 69
Period size: 3 Copynumber: 24.3 Consensus size: 3
28267 GCTTAAAAAA
* * *
28277 TAT TA- TAT TGT TAT TAT AAT AAT TACT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* *
28322 TAT TAT TAA T-T TAT ATAT TAT AAT TAT T
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT T
28350 TTGTGGGCCA
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
2 3 0.05
3 49 0.84
4 6 0.10
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:29522 original size:48 final size:48
Alignment explanation
Indices: 29458--29549 Score: 121
Period size: 48 Copynumber: 1.9 Consensus size: 48
29448 CGATACTACT
* * **
29458 TATATATATATATTATTTCTTTTTCTTTTTATTTTCTTTTTTTATTTA
1 TATATATATATATTATTACCTTAACTTTTTATTTTCTTTTTTTATTTA
* * *
29506 TATATATATTTTTTATTACCTTAACTTTTTTTTTTCTTTTTTTA
1 TATATATATATATTATTACCTTAACTTTTTATTTTCTTTTTTTA
29550 ATAACCTTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 37 1.00
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (48 bp):
TATATATATATATTATTACCTTAACTTTTTATTTTCTTTTTTTATTTA
Found at i:29595 original size:11 final size:11
Alignment explanation
Indices: 29569--29604 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
29559 TTATTATTCT
*
29569 TTATTGTTATTG
1 TTATT-TTATTA
29581 TTATTTTATTA
1 TTATTTTATTA
29592 TTATTTTATTA
1 TTATTTTATTA
29603 TT
1 TT
29605 TTTAATTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 18 0.78
12 5 0.22
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:30138 original size:17 final size:16
Alignment explanation
Indices: 30118--30207 Score: 76
Period size: 17 Copynumber: 5.3 Consensus size: 16
30108 TATAATCATA
30118 TGATATATGCAAATATC
1 TGATATATG-AAATATC
*
30135 TGATA-ACTGTAATCATC
1 TGATATA-TGAAAT-ATC
30152 TGATATATGTAAATATC
1 TGATATATG-AAATATC
* *
30169 TTATA-ATTGTAATCATC
1 TGATATA-TGAAAT-ATC
30186 TGATATATGTAAATATC
1 TGATATATG-AAATATC
30203 TGATA
1 TGATA
30208 ATTGAAAATC
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
16 8 0.14
17 43 0.73
18 8 0.14
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (16 bp):
TGATATATGAAATATC
Found at i:30141 original size:34 final size:34
Alignment explanation
Indices: 30099--30225 Score: 164
Period size: 34 Copynumber: 3.7 Consensus size: 34
30089 TTAATATATG
*
30099 TCTGATAACTATAATCATATGATATATGCAAATA
1 TCTGATAACTATAATCATATGATATATGTAAATA
* *
30133 TCTGATAACTGTAATCATCTGATATATGTAAATA
1 TCTGATAACTATAATCATATGATATATGTAAATA
* * * *
30167 TCTTATAATTGTAATCATCTGATATATGTAAATA
1 TCTGATAACTATAATCATATGATATATGTAAATA
* *
30201 TCTGATAATTGAAAATCATATGATA
1 TCTGATAACT-ATAATCATATGATA
30226 ACTGTAACGT
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
34 72 0.87
35 11 0.13
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (34 bp):
TCTGATAACTATAATCATATGATATATGTAAATA
Found at i:30216 original size:17 final size:17
Alignment explanation
Indices: 30128--30226 Score: 73
Period size: 17 Copynumber: 5.8 Consensus size: 17
30118 TGATATATGC
*
30128 AAAT-ATCTGATAACTG
1 AAATCATCTGATAATTG
*
30144 TAATCATCTGAT-ATATG
1 AAATCATCTGATAAT-TG
*
30161 TAAAT-ATCTTATAATTG
1 -AAATCATCTGATAATTG
*
30178 TAATCATCTGAT-ATATG
1 AAATCATCTGATAAT-TG
30195 TAAAT-ATCTGATAATTG
1 -AAATCATCTGATAATTG
*
30212 AAAATCATATGATAA
1 -AAATCATCTGATAA
30227 CTGTAACGTT
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
16 9 0.14
17 38 0.58
18 18 0.28
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.38
Consensus pattern (17 bp):
AAATCATCTGATAATTG
Found at i:30645 original size:97 final size:98
Alignment explanation
Indices: 30541--30727 Score: 245
Period size: 97 Copynumber: 1.9 Consensus size: 98
30531 GTTTACACAA
* * *
30541 TTTAATCTCACTTTATATC-TTTATAATTGAAGCATTTAATTTTTTCAATCCCACATTTTCCCTT
1 TTTAATCTAACTTTATA-CATTTATAATTGAAGCACTTAATTTTTTCAATCCCACATTTTACCTT
30605 TATAATTGAAGCTC-CT-ATTTTTTCCCTAACTTT
65 TATAATTG-AGCTCTCTGATTTTTTCCCTAACTTT
* * * * * *
30638 TTTAATCTAACTTTTTACATTTATAATTGAGGCCCTTAATTTTTTCAATCTCACTTTTTATCTTT
1 TTTAATCTAACTTTATACATTTATAATTGAAGCACTTAATTTTTTCAATCCCACATTTTACCTTT
*
30703 ATAATTGAGGTCTCTGATTTTTTCC
66 ATAATTGAGCTCTCTGATTTTTTCC
30728 AGTCTCACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
96 5 0.06
97 63 0.82
98 9 0.12
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.51
Consensus pattern (98 bp):
TTTAATCTAACTTTATACATTTATAATTGAAGCACTTAATTTTTTCAATCCCACATTTTACCTTT
ATAATTGAGCTCTCTGATTTTTTCCCTAACTTT
Found at i:30747 original size:44 final size:43
Alignment explanation
Indices: 30630--30794 Score: 167
Period size: 44 Copynumber: 3.8 Consensus size: 43
30620 TATTTTTTCC
* * * *
30630 CTAACTTTTTT-AATCTAACTTTTTACATTTATAATTGAGG-CC
1 CTAA-TTTTTTCAATCTCACTTTCTACCTTTATAATTGAGGTCA
* * *
30672 CTTAATTTTTTCAATCTCACTTTTTATCTTTATAATTGAGGTCT
1 C-TAATTTTTTCAATCTCACTTTCTACCTTTATAATTGAGGTCA
* * *
30716 CTGATTTTTTCCAGTCTCACTTTCTACCTTTATAATTGAAGTCA
1 CTAATTTTTT-CAATCTCACTTTCTACCTTTATAATTGAGGTCA
*
30760 CTAACTTTTT-AATCTCAC-TTCTTACCTTTATAATT
1 CTAATTTTTTCAATCTCACTTTC-TACCTTTATAATT
30795 AAGACCTCTA
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
41 3 0.03
42 27 0.26
43 37 0.35
44 38 0.36
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.50
Consensus pattern (43 bp):
CTAATTTTTTCAATCTCACTTTCTACCTTTATAATTGAGGTCA
Found at i:30789 original size:42 final size:43
Alignment explanation
Indices: 30630--30794 Score: 172
Period size: 43 Copynumber: 3.8 Consensus size: 43
30620 TATTTTTTCC
* * * * *
30630 CTAACTTTTTTAATCTAACTTTTTACATTTATAATTG-AGGCC
1 CTAACTTTTTCAATCTCACTTTTTACCTTTATAATTGAAGTCA
* * * *
30672 CTTAATTTTTTCAATCTCACTTTTTATCTTTATAATTGAGGTCT
1 C-TAACTTTTTCAATCTCACTTTTTACCTTTATAATTGAAGTCA
* * * *
30716 CTGATTTTTTCCAGTCTCACTTTCTACCTTTATAATTGAAGTCA
1 CTAACTTTTT-CAATCTCACTTTTTACCTTTATAATTGAAGTCA
*
30760 CTAACTTTTT-AATCTCACTTCTTACCTTTATAATT
1 CTAACTTTTTCAATCTCACTTTTTACCTTTATAATT
30795 AAGACCTCTA
Statistics
Matches: 101, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 23 0.23
43 39 0.39
44 39 0.39
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.50
Consensus pattern (43 bp):
CTAACTTTTTCAATCTCACTTTTTACCTTTATAATTGAAGTCA
Found at i:30809 original size:86 final size:87
Alignment explanation
Indices: 30647--30811 Score: 208
Period size: 86 Copynumber: 1.9 Consensus size: 87
30637 TTTTAATCTA
* * * * * *
30647 ACTTTTTACATTTATAATTGAGGCCCTTAATTTTTTCAATCTCACTTTTTATCTTTATAATTGAG
1 ACTTTCTACATTTATAATTGAGGCACTTAACTTTTTCAATCTCACTTCTTACCTTTATAATTAAG
** *
30712 GTCTCTGATTTTTTCCAGTCTC
66 ACCTCTAATTTTTTCCAGTCTC
* *
30734 ACTTTCTACCTTTATAATTGAAGTCAC-TAACTTTTT-AATCTCACTTCTTACCTTTATAATTAA
1 ACTTTCTACATTTATAATTG-AGGCACTTAACTTTTTCAATCTCACTTCTTACCTTTATAATTAA
30797 GACCTCTAATTTTTT
65 GACCTCTAATTTTTT
30812 AATAATTTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
86 36 0.55
87 26 0.39
88 4 0.06
ACGTcount: A:0.25, C:0.19, G:0.07, T:0.49
Consensus pattern (87 bp):
ACTTTCTACATTTATAATTGAGGCACTTAACTTTTTCAATCTCACTTCTTACCTTTATAATTAAG
ACCTCTAATTTTTTCCAGTCTC
Found at i:30811 original size:42 final size:42
Alignment explanation
Indices: 30630--30814 Score: 176
Period size: 42 Copynumber: 4.3 Consensus size: 42
30620 TATTTTTTCC
* * *
30630 CTAACTTTTTTAATCTAACTTTTTACATTTATAATTGAGGCC-
1 CTAA-TTTTTTAATCTCACTTTTTACCTTTATAATTAAGGCCT
* * *
30672 CTTAATTTTTTCAATCTCACTTTTTATCTTTATAATTGAGGTCT
1 C-TAATTTTTT-AATCTCACTTTTTACCTTTATAATTAAGGCCT
* * * * *
30716 CTGATTTTTTCCAGTCTCACTTTCTACCTTTATAATTGAA-GTCA
1 CTAATTTTTT--AATCTCACTTTTTACCTTTATAATT-AAGGCCT
* * *
30760 CTAACTTTTTAATCTCACTTCTTACCTTTATAATTAAGACCT
1 CTAATTTTTTAATCTCACTTTTTACCTTTATAATTAAGGCCT
30802 CTAATTTTTTAAT
1 CTAATTTTTTAAT
30815 AATTTAAGAT
Statistics
Matches: 118, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.02
42 42 0.36
43 38 0.32
44 35 0.30
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.49
Consensus pattern (42 bp):
CTAATTTTTTAATCTCACTTTTTACCTTTATAATTAAGGCCT
Found at i:41174 original size:17 final size:17
Alignment explanation
Indices: 41152--41190 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
41142 TGAATCAAAT
41152 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
41169 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
41186 -AATTA
1 TAATTA
41191 ATTGTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TAATTAGATATTATTTA
Found at i:41715 original size:3 final size:3
Alignment explanation
Indices: 41707--41752 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
41697 ATATTTATAC
41707 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
41753 ATATAAAACA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:41786 original size:27 final size:26
Alignment explanation
Indices: 41709--41800 Score: 89
Period size: 27 Copynumber: 3.4 Consensus size: 26
41699 ATTTATACAT
* *
41709 AATAATAATAATAAT-AATAATAATAAT
1 AATAATAAAAATAATAAAT-ATAA-AAC
*
41736 AATAATAATAATAATAAATATAAAAC
1 AATAATAAAAATAATAAATATAAAAC
41762 AATAACTAAAAATAATGAAAT-TAAAAC
1 AATAA-TAAAAATAAT-AAATATAAAAC
*
41789 TATAAATAAAAA
1 AAT-AATAAAAA
41801 ACTAGTAATT
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
26 7 0.12
27 42 0.72
28 9 0.16
ACGTcount: A:0.68, C:0.03, G:0.01, T:0.27
Consensus pattern (26 bp):
AATAATAAAAATAATAAATATAAAAC
Found at i:43047 original size:3 final size:3
Alignment explanation
Indices: 43032--43139 Score: 107
Period size: 3 Copynumber: 36.0 Consensus size: 3
43022 ATTTGGCCTG
* *
43032 TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA TAAA TAAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA T-AA TAA TAA TAA
* *
43079 TAA TAA -AA TGA TAA TAA TAA TAA TAA T-A TAA TAT TAA -ATA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
*
43122 TAAA TAA -AA AAA TAA TAA
1 T-AA TAA TAA TAA TAA TAA
43140 ATAAAAAAAT
Statistics
Matches: 89, Mismatches: 9, Indels: 14
0.79 0.08 0.12
Matches are distributed among these distances:
2 7 0.08
3 71 0.80
4 11 0.12
ACGTcount: A:0.68, C:0.02, G:0.01, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:43077 original size:20 final size:19
Alignment explanation
Indices: 43039--43154 Score: 98
Period size: 20 Copynumber: 6.0 Consensus size: 19
43029 CTGTAATAAC
43039 AATAAT-AAT-AATAATAAT
1 AATAATAAATAAATAA-AAT
43057 AATAATAAATAAATAACAAT
1 AATAATAAATAAATAA-AAT
*
43077 AATAATAAA-ATGATAATAAT
1 AATAATAAATA-AATAA-AAT
*
43097 AATAATAATATAATATTAAAT
1 AATAATAA-ATAA-ATAAAAT
43118 -ATAATAAATAAA-AAAAT
1 AATAATAAATAAATAAAAT
* *
43135 AATAAATAAAAAAATCAAAT
1 AAT-AATAAATAAATAAAAT
43155 GGGAAAAAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
17 4 0.05
18 9 0.11
19 17 0.21
20 43 0.53
21 4 0.05
22 4 0.05
ACGTcount: A:0.69, C:0.02, G:0.01, T:0.28
Consensus pattern (19 bp):
AATAATAAATAAATAAAAT
Found at i:43797 original size:113 final size:111
Alignment explanation
Indices: 43385--43879 Score: 580
Period size: 113 Copynumber: 4.3 Consensus size: 111
43375 ATTGAACAAA
* * * * *
43385 TTCTTCTCATTATGAACTCTTCTGGAAAAGTTGATCCATCGAGTAATGAATTCGAGCAAAAAGTT
1 TTCTTCTCATTATGAACTCTTCTGGCAATGTTGATCCACCGAGTGATGAATTCAAGCAAAAAGTT
*
43450 GAACAAGTTCTTCTCATTATGAAATTCTTCTTCTTCTTCAGATGAG
66 GAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAG
* * **
43496 TTCTTCTCATTATGAACACTTCTGGAAATGCTAATGTTGATCTATCTTCTTCTGTGAT-AGATTC
1 TTCTTCTCATTATGAACTCTTCT-G----GC-AATGTTGATCCA-C--C--GAGTGATGA-ATTC
* * * * *
43560 AAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCGTCCTCTTCAGATAAG
54 AAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAG
* * * * *
43618 TTCTTCTCATTATGAAC-CTTCTGGCAACGTTGATCTATCGAATGATGAATTCAAGCAAAAGGTT
1 TTCTTCTCATTATGAACTCTTCTGGCAATGTTGATCCACCGAGTGATGAATTCAAGCAAAAAGTT
* * * *
43682 GAACAAATTCTTCTCATTATGAATTTATTTTTTCTTCTTCAGATGAG
66 GAACAAGTTCTTCTCATTATGAACTT-CTTCTTCTTCTTCAGATGAG
* * *
43729 TTCTTCTCATTATGAACTCTAACTGGCACTGTTGATCCACCGAGTGATGAATTTAAGCAAAAAGT
1 TTCTTCTCATTATGAACTCT-TCTGGCAATGTTGATCCACCGAGTGATGAATTCAAGCAAAAAGT
*
43794 TGAACAAGTTCTTCTCATTGTGAACTTCTTCTTCCTTCTTCAGATGAG
65 TGAACAAGTTCTTCTCATTATGAACTTCTTCTT-CTTCTTCAGATGAG
*
43842 TTCTTCTCATTATGAACTCTTCTGGAAATGTTGATCCA
1 TTCTTCTCATTATGAACTCTTCTGGCAATGTTGATCCA
43880 TTGAATGATG
Statistics
Matches: 323, Mismatches: 44, Indels: 33
0.81 0.11 0.08
Matches are distributed among these distances:
110 43 0.13
111 55 0.17
112 23 0.07
113 94 0.29
115 11 0.03
116 3 0.01
117 10 0.03
120 2 0.01
121 6 0.02
122 76 0.24
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (111 bp):
TTCTTCTCATTATGAACTCTTCTGGCAATGTTGATCCACCGAGTGATGAATTCAAGCAAAAAGTT
GAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAG
Found at i:45064 original size:18 final size:19
Alignment explanation
Indices: 45036--45091 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
45026 TTTACAAAAT
45036 AAAAGAATAAATTGAATTTC
1 AAAA-AATAAATTGAATTTC
* *
45056 -GAAAATAAATTGAATCTC
1 AAAAAATAAATTGAATTTC
45074 AAAAAATAAATTGAATTT
1 AAAAAATAAATTGAATTT
45092 AGAGAAACTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
18 14 0.45
19 17 0.55
ACGTcount: A:0.55, C:0.05, G:0.09, T:0.30
Consensus pattern (19 bp):
AAAAAATAAATTGAATTTC
Found at i:52839 original size:15 final size:15
Alignment explanation
Indices: 52816--52847 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
52806 TGCAATGAAT
52816 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
52831 AATGCATGTATGCAA
1 AATGAATGTATGCAA
52846 AA
1 AA
52848 GGTATTGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:56919 original size:3 final size:3
Alignment explanation
Indices: 56913--56973 Score: 81
Period size: 3 Copynumber: 20.7 Consensus size: 3
56903 ATATTTATAC
*
56913 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA A-A ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
56959 ATA ACTA AAA ATA AT
1 ATA A-TA ATA ATA AT
56974 GAAATTAAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
2 4 0.08
3 45 0.87
4 3 0.06
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:58248 original size:3 final size:3
Alignment explanation
Indices: 58227--58306 Score: 117
Period size: 3 Copynumber: 26.7 Consensus size: 3
58217 ATTTAGCCTG
* *
58227 TAA TAA CAA TAA TAT TAA TAA TAA TAA TAA TAAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
*
58273 TAA -AA TGA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
58307 TATATTAAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
2 2 0.03
3 64 0.93
4 3 0.04
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:58636 original size:21 final size:21
Alignment explanation
Indices: 58590--58640 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
58580 ACCGTGCGGC
* *
58590 CGTCACGGGCGCTATTACGGT
1 CGTCGCGGGCGCTATTACGCT
*
58611 CGTCGCGGGCGCTATTGCGACT
1 CGTCGCGGGCGCTATTACG-CT
58633 -GTCGCGGG
1 CGTCGCGGG
58641 TAACTCGGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.10, C:0.29, G:0.39, T:0.22
Consensus pattern (21 bp):
CGTCGCGGGCGCTATTACGCT
Found at i:61150 original size:19 final size:19
Alignment explanation
Indices: 61085--61153 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 19
61075 ATAATACCCC
*
61085 TTATTTTTCAATTAAATATA
1 TTATTTTTTAA-TAAATATA
61105 TATATTTTTATTGAATAAA-AGTA
1 T-TA-TTTT-TT-AATAAATA-TA
61128 --ATTTTTTAATAAATATA
1 TTATTTTTTAATAAATATA
61145 TTATTTTTT
1 TTATTTTTT
61154 GTCAGATCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 17
0.69 0.02 0.29
Matches are distributed among these distances:
17 8 0.20
18 3 0.08
19 11 0.28
20 2 0.05
21 2 0.05
22 5 0.12
23 7 0.17
24 2 0.05
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (19 bp):
TTATTTTTTAATAAATATA
Found at i:67720 original size:19 final size:19
Alignment explanation
Indices: 67685--67763 Score: 53
Period size: 17 Copynumber: 4.4 Consensus size: 19
67675 GTAATATTTT
67685 TTTATAATTAATGTTAATA
1 TTTATAATTAATGTTAATA
* *
67704 TTTATTATT-ATGTTTA-A
1 TTTATAATTAATGTTAATA
* *
67721 TTTA-AATTTAT-TATGA-A
1 TTTATAATTAATGT-TAATA
* *
67738 TTTAT-ATTAATTTTAATT
1 TTTATAATTAATGTTAATA
67756 TTTATAAT
1 TTTATAAT
67764 GCATATTATT
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
16 4 0.09
17 21 0.45
18 12 0.26
19 10 0.21
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (19 bp):
TTTATAATTAATGTTAATA
Found at i:69363 original size:42 final size:42
Alignment explanation
Indices: 69304--69404 Score: 175
Period size: 42 Copynumber: 2.4 Consensus size: 42
69294 TCCACTTTAG
* * *
69304 ATGCCATCTCCTCAGGGGTATATGTCAAGCCCACCAGTTCAT
1 ATGCCATCTCCGCAGGGGTATATGCCAAGCCCACCAATTCAT
69346 ATGCCATCTCCGCAGGGGTATATGCCAAGCCCACCAATTCAT
1 ATGCCATCTCCGCAGGGGTATATGCCAAGCCCACCAATTCAT
69388 ATGCCATCTCCGCAGGG
1 ATGCCATCTCCGCAGGG
69405 TTGCATTCCT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.23
Consensus pattern (42 bp):
ATGCCATCTCCGCAGGGGTATATGCCAAGCCCACCAATTCAT
Found at i:69419 original size:42 final size:42
Alignment explanation
Indices: 69278--69404 Score: 157
Period size: 42 Copynumber: 3.0 Consensus size: 42
69268 ATACCACAGT
* * * * *
69278 GGTACATGCCCAA-CCCTCCACTTTAGATGCCATCTCCTCAGG
1 GGTACATG-CCAAGCCCACCAATTCATATGCCATCTCCGCAGG
* * *
69320 GGTATATGTCAAGCCCACCAGTTCATATGCCATCTCCGCAGG
1 GGTACATGCCAAGCCCACCAATTCATATGCCATCTCCGCAGG
*
69362 GGTATATGCCAAGCCCACCAATTCATATGCCATCTCCGCAGG
1 GGTACATGCCAAGCCCACCAATTCATATGCCATCTCCGCAGG
69404 G
1 G
69405 TTGCATTCCT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
41 3 0.04
42 72 0.96
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.23
Consensus pattern (42 bp):
GGTACATGCCAAGCCCACCAATTCATATGCCATCTCCGCAGG
Found at i:69448 original size:21 final size:21
Alignment explanation
Indices: 69397--69448 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
69387 TATGCCATCT
* *
69397 CCGCAGGGTTGCATTCCTAGC
1 CCGCAGGGTTACATGCCTAGC
69418 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
69439 CCGCAGGGTT
1 CCGCAGGGTT
69449 TTATACTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 2 0.07
21 23 0.85
22 2 0.07
ACGTcount: A:0.15, C:0.35, G:0.29, T:0.21
Consensus pattern (21 bp):
CCGCAGGGTTACATGCCTAGC
Found at i:70003 original size:34 final size:34
Alignment explanation
Indices: 69960--70066 Score: 160
Period size: 34 Copynumber: 3.1 Consensus size: 34
69950 ATAAATGTTT
69960 TTAAAATACAAATTATAGTATTCGAAATTTAAAA
1 TTAAAATACAAATTATAGTATTCGAAATTTAAAA
* *
69994 TTAAAATACAAATAATATTATTCGAAATTTAAAA
1 TTAAAATACAAATTATAGTATTCGAAATTTAAAA
* * * *
70028 TTTAAATATAAATTATAGTATTTGAAATTTAACA
1 TTAAAATACAAATTATAGTATTCGAAATTTAAAA
70062 TTAAA
1 TTAAA
70067 TTCAACTTAA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 64 1.00
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (34 bp):
TTAAAATACAAATTATAGTATTCGAAATTTAAAA
Found at i:74194 original size:73 final size:73
Alignment explanation
Indices: 74075--74221 Score: 294
Period size: 73 Copynumber: 2.0 Consensus size: 73
74065 AAGGATGCCA
74075 CTTCGAGAAATATATATCAAACAATGCTAAAAAGGAAGATATTCGATTAAACGTTGTCAATTAAA
1 CTTCGAGAAATATATATCAAACAATGCTAAAAAGGAAGATATTCGATTAAACGTTGTCAATTAAA
74140 TCAAATCG
66 TCAAATCG
74148 CTTCGAGAAATATATATCAAACAATGCTAAAAAGGAAGATATTCGATTAAACGTTGTCAATTAAA
1 CTTCGAGAAATATATATCAAACAATGCTAAAAAGGAAGATATTCGATTAAACGTTGTCAATTAAA
74213 TCAAATCG
66 TCAAATCG
74221 C
1 C
74222 CGGTCCAAGA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (73 bp):
CTTCGAGAAATATATATCAAACAATGCTAAAAAGGAAGATATTCGATTAAACGTTGTCAATTAAA
TCAAATCG
Found at i:77343 original size:20 final size:19
Alignment explanation
Indices: 77320--77375 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
77310 TCCCTAAAGG
*
77320 AAATATATTTTGAAGAATAA
1 AAATATATTTT-AAAAATAA
77340 AAATCA-ATTTTAAAAATCAA
1 AAAT-ATATTTTAAAAAT-AA
* *
77360 AATTATTTTTTAAAAA
1 AAATATATTTTAAAAA
77376 ATTGTTTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 6 0.20
20 23 0.77
21 1 0.03
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (19 bp):
AAATATATTTTAAAAATAA
Found at i:83090 original size:20 final size:20
Alignment explanation
Indices: 83065--83109 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
83055 GTTTTGATAT
83065 ATGTAATTTTAAAAAATTTA
1 ATGTAATTTTAAAAAATTTA
*
83085 ATGTAATTTTACAAAATTTA
1 ATGTAATTTTAAAAAATTTA
83105 ATGTA
1 ATGTA
83110 TTTATATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (20 bp):
ATGTAATTTTAAAAAATTTA
Found at i:83162 original size:16 final size:15
Alignment explanation
Indices: 83123--83196 Score: 57
Period size: 16 Copynumber: 4.8 Consensus size: 15
83113 ATATTTTGAT
83123 AAAATATTTAATATATA
1 AAAATATTTAAT-T-TA
83140 TAAATATATTT-ATTTA
1 -AAA-ATATTTAATTTA
83156 AAAATATTTAATTT-
1 AAAATATTTAATTTA
*
83170 -AATTATTT-ATTATA
1 AAAATATTTAATT-TA
83184 TAAAATATTTAAT
1 -AAAATATTTAAT
83197 ATGATACTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 15
0.73 0.03 0.23
Matches are distributed among these distances:
12 3 0.06
13 8 0.17
14 6 0.13
15 7 0.15
16 9 0.19
17 3 0.06
18 5 0.11
19 6 0.13
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AAAATATTTAATTTA
Found at i:83346 original size:30 final size:28
Alignment explanation
Indices: 83309--83379 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 28
83299 AATGAATATT
* *
83309 CAAATATTATATGGATATTTTAATAAAGTA
1 CAAATATTATATGAACATTTT-A-AAAGTA
*
83339 CATATATTATATTGAACATTTTAAAAGTA
1 CAAATATTATA-TGAACATTTTAAAAGTA
83368 CAAATATTATAT
1 CAAATATTATAT
83380 TAAATATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 16 0.44
30 11 0.31
31 8 0.22
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (28 bp):
CAAATATTATATGAACATTTTAAAAGTA
Found at i:83374 original size:29 final size:30
Alignment explanation
Indices: 83309--83422 Score: 108
Period size: 31 Copynumber: 3.8 Consensus size: 30
83299 AATGAATATT
*
83309 CAAATATTATA-TGGATATTTTAATAAAGTA
1 CAAATATTATATTGAATATTTT-ATAAAGTA
* *
83339 CATATATTATATTGAACATTTTA-AAAGTA
1 CAAATATTATATTGAATATTTTATAAAGTA
* **
83368 CAAATATTATATTAAATATTTTATTAAAAAA
1 CAAATATTATATTGAATATTTTA-TAAAGTA
* *
83399 TAAATATTAAATTTG-ATATTTTAT
1 CAAATATTATA-TTGAATATTTTAT
83423 TAAAAGATAA
Statistics
Matches: 69, Mismatches: 11, Indels: 8
0.78 0.12 0.09
Matches are distributed among these distances:
29 26 0.38
30 12 0.17
31 29 0.42
32 2 0.03
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (30 bp):
CAAATATTATATTGAATATTTTATAAAGTA
Found at i:83407 original size:31 final size:31
Alignment explanation
Indices: 83369--83453 Score: 107
Period size: 31 Copynumber: 2.7 Consensus size: 31
83359 TTAAAAGTAC
83369 AAATATTATATTAAATATTTTATTAAAAAAT
1 AAATATTATATTAAATATTTTATTAAAAAAT
* ** *
83400 AAATATTAAATTTGATATTTTATTAAAAGAT
1 AAATATTATATTAAATATTTTATTAAAAAAT
* * *
83431 AAGTATCATATTAAACATTTTAT
1 AAATATTATATTAAATATTTTAT
83454 CAGCCAATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (31 bp):
AAATATTATATTAAATATTTTATTAAAAAAT
Found at i:83860 original size:20 final size:20
Alignment explanation
Indices: 83835--83873 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
83825 AAGGGATCTC
* *
83835 TACATCTTAGAGTTCACATT
1 TACATCTCAGAGCTCACATT
83855 TACATCTCAGAGCTCACAT
1 TACATCTCAGAGCTCACAT
83874 ACCCCTCTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (20 bp):
TACATCTCAGAGCTCACATT
Found at i:84295 original size:20 final size:20
Alignment explanation
Indices: 84272--84314 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
84262 TGGTCTTACA
84272 GTATCGATACCCAACCCAAT
1 GTATCGATACCCAACCCAAT
*
84292 GTATCGATACCCAACCCATT
1 GTATCGATACCCAACCCAAT
84312 GTA
1 GTA
84315 CCAATACTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.33, G:0.12, T:0.23
Consensus pattern (20 bp):
GTATCGATACCCAACCCAAT
Found at i:84321 original size:20 final size:20
Alignment explanation
Indices: 84278--84321 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
84268 TACAGTATCG
* *
84278 ATACCCAACCCAATGTATCG
1 ATACCCAACCCAATGTACCA
*
84298 ATACCCAACCCATTGTACCA
1 ATACCCAACCCAATGTACCA
84318 ATAC
1 ATAC
84322 TCCAGTTGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.36, G:0.07, T:0.20
Consensus pattern (20 bp):
ATACCCAACCCAATGTACCA
Found at i:85853 original size:37 final size:37
Alignment explanation
Indices: 85801--85889 Score: 133
Period size: 37 Copynumber: 2.4 Consensus size: 37
85791 TTTTGTTCAG
* *
85801 GTCGGGTCGGGTTTTTTAAGTGTGGTATTCGGGTCGA
1 GTCGGGTCGAGTTTTTTAAGTGTGATATTCGGGTCGA
* *
85838 GTCGGGTCGATTTTTTTAAGTGTGATATTCGGGTCGG
1 GTCGGGTCGAGTTTTTTAAGTGTGATATTCGGGTCGA
85875 GTCGGGTTCGAGTTT
1 GTCGGG-TCGAGTTT
85890 AGGGTGAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 39 0.85
38 7 0.15
ACGTcount: A:0.11, C:0.11, G:0.38, T:0.39
Consensus pattern (37 bp):
GTCGGGTCGAGTTTTTTAAGTGTGATATTCGGGTCGA
Found at i:86006 original size:248 final size:252
Alignment explanation
Indices: 85590--86132 Score: 857
Period size: 248 Copynumber: 2.2 Consensus size: 252
85580 TCGGGTTGGA
* * *
85590 TCGGGTTTTTTTAAGTGTGATATTTC-GGTCGAGTCGGGTTCGGGTTTAGGGTGAAAAATATCGG
1 TCGGATTTTTTTAAGTGTGATA-TTCGGGTCGGGTCGGGTTCGAGTTTAGGGTGAAAAATATC-G
85654 ACCGACCCGAAAATATATATAATTCAGGTCGGGTCGAATTAAGTCACTGTTTTTATTAAATAAAA
64 -CCGACCCGAAAATATATATAATTCAGGTCGGGTCGAATTAAGTCACTGTTTTTATTAAATAAAA
** * *
85719 ATAATTTTTTATTATTTTGGGTCGGGTTGGATTTCTAATTCATATATTCGGGTCGGGTCGGATGA
128 ATAATTTTTTATTATTTCAGGTCGGGTCGGATTTCTAATTCATATATTCGGGTCGGGTCAGATGA
* *
85784 AACTTTATTTTGTTCAGGTCGGGTCGGGTTTTTTAAGTGTGGTATTCGGGTCGAGTCGGG
193 AACTTTATTTTGTTCAGGTCGGGTCGGGTTTTTTAAGTGTGATATTCGAGTCGAGTCGGG
85844 TC-GATTTTTTTAAGTGTGATATTCGGGTCGGGTCGGGTTCGAGTTTAGGGTGAAAAA-A-C-CC
1 TCGGATTTTTTTAAGTGTGATATTCGGGTCGGGTCGGGTTCGAGTTTAGGGTGAAAAATATCGCC
* * *
85905 GGA-CCGAAATATATATATAATTCGGGTCGGGTCGGATTAAGTCATTGTTTTTATTAAA-AAAAA
66 -GACCCGAAA-ATATATATAATTCAGGTCGGGTCGAATTAAGTCACTGTTTTTATTAAATAAAAA
85968 TAATTTTTTATTATTTCAGGTCGGGTCGGATTTCTAATTCATATATTCGGGTCGGGTCAGATGAA
129 TAATTTTTTATTATTTCAGGTCGGGTCGGATTTCTAATTCATATATTCGGGTCGGGTCAGATGAA
*
86033 ACTTTATTTTGTTCAGGTCGGGTCGGGTTTTTTAAGTGTGATATTCGAGTCTAGTCGGG
194 ACTTTATTTTGTTCAGGTCGGGTCGGGTTTTTTAAGTGTGATATTCGAGTCGAGTCGGG
*
86092 TCGGGTTTTTTTAAGTGTGATATTCGGGTCGGGTTCGGGTT
1 TCGGATTTTTTTAAGTGTGATATTCGGGTCGGG-TCGGGTT
86133 TAGGGTGAAA
Statistics
Matches: 270, Mismatches: 14, Indels: 14
0.91 0.05 0.05
Matches are distributed among these distances:
248 132 0.49
249 76 0.28
250 7 0.03
251 1 0.00
252 4 0.01
253 48 0.18
254 2 0.01
ACGTcount: A:0.22, C:0.11, G:0.28, T:0.38
Consensus pattern (252 bp):
TCGGATTTTTTTAAGTGTGATATTCGGGTCGGGTCGGGTTCGAGTTTAGGGTGAAAAATATCGCC
GACCCGAAAATATATATAATTCAGGTCGGGTCGAATTAAGTCACTGTTTTTATTAAATAAAAATA
ATTTTTTATTATTTCAGGTCGGGTCGGATTTCTAATTCATATATTCGGGTCGGGTCAGATGAAAC
TTTATTTTGTTCAGGTCGGGTCGGGTTTTTTAAGTGTGATATTCGAGTCGAGTCGGG
Found at i:87651 original size:2 final size:2
Alignment explanation
Indices: 87644--87691 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
87634 TATAGTAATT
87644 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
87686 TA TA TA
1 TA TA TA
87692 AAGTTTGATG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:89704 original size:29 final size:29
Alignment explanation
Indices: 89640--89697 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
89630 CAATAGACTG
89640 AAATAAATACAACATACAAATTAGAAACC
1 AAATAAATACAACATACAAATTAGAAACC
*
89669 AAATAAATACAAGATACAAATTAGAAACC
1 AAATAAATACAACATACAAATTAGAAACC
89698 GATTAAACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.62, C:0.16, G:0.05, T:0.17
Consensus pattern (29 bp):
AAATAAATACAACATACAAATTAGAAACC
Found at i:93296 original size:22 final size:22
Alignment explanation
Indices: 93247--93298 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
93237 ATCTTATATG
* *
93247 GCACTACGGTGCAATTCTACGC
1 GCACTTCGGTACAATTCTACGC
*
93269 GCACTTCGGTACAATTCTACGT
1 GCACTTCGGTACAATTCTACGC
*
93291 GGACTTCG
1 GCACTTCG
93299 TGCATTATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (22 bp):
GCACTTCGGTACAATTCTACGC
Done.