genome.fa.s7125.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007125.1 Hibiscus syriacus cultivar Beakdansim tig00018616_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86141

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78--122	15	3.0	15	86	0	63	46	8	17	26	1.78
508--559	13	3.9	13	73	14	52	48	11	3	36	1.58
548--644	33	3.0	33	91	4	146	45	14	7	32	1.72
2935--2982	23	2.0	24	88	4	71	29	16	16	37	1.91
6968--7108	31	4.5	31	97	0	255	36	21	21	19	1.95
11295--11443	31	5.0	31	91	6	202	36	22	21	19	1.95
11308--11443	61	2.3	62	89	6	210	36	22	22	18	1.95
29333--29391	21	2.9	21	89	2	84	23	25	16	33	1.96
30507--30659	58	2.7	56	83	6	191	26	18	12	41	1.86
33046--33153	37	3.0	38	84	7	120	32	5	19	42	1.74
33563--33595	16	2.1	16	94	0	57	33	6	30	30	1.82
37655--37738	37	2.3	38	87	6	120	33	4	19	42	1.72
42042--42072	14	2.2	14	94	0	53	16	22	16	45	1.85
42607--42711	3	34.7	3	90	1	165	34	3	0	61	1.14
42710--42766	20	3.1	19	80	11	57	66	1	0	31	1.02
44089--44124	19	1.9	19	94	5	65	22	0	5	72	1.05
44154--44194	20	2.0	21	85	4	57	36	2	2	58	1.24
55537--55611	11	7.1	10	77	16	62	78	0	18	2	0.86
55533--55615	12	7.1	12	74	16	59	77	0	20	2	0.89
55534--55613	21	3.8	20	78	16	74	78	0	18	2	0.86
55539--55608	22	3.2	22	75	18	74	80	0	17	2	0.84
55540--55615	34	2.2	34	86	9	100	78	0	18	2	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56742--57251	83	6.2	83	91	1	801	30	13	20	36	1.90
56742--57253	165	3.1	165	93	0	855	30	13	20	36	1.91
57876--58643	113	6.9	113	97	1	1408	37	12	20	29	1.89
58962--59052	3	29.7	3	86	4	128	34	4	0	61	1.16
58972--59052	37	2.2	36	93	0	117	34	4	0	60	1.18
59051--59095	20	2.3	19	84	3	54	62	2	0	35	1.08
60431--60466	19	1.9	19	94	5	65	22	0	5	72	1.05
60496--60536	20	2.0	21	85	4	57	36	2	2	58	1.24
61465--61504	2	20.0	2	100	0	80	50	0	0	50	1.00
68233--68264	2	16.5	2	93	6	57	50	0	0	50	1.00
68797--68852	25	2.2	26	84	12	71	50	3	1	44	1.29
69326--69500	20	8.6	20	75	8	129	25	24	19	30	1.98
69401--69500	20	5.0	20	90	0	137	27	25	20	28	1.99
70329--70380	24	2.2	23	86	6	77	21	19	17	42	1.89
72660--72929	140	1.9	140	98	0	522	28	13	15	42	1.85
72900--73119	20	11.6	20	75	11	196	34	22	18	25	1.96
73109--73164	20	2.8	21	81	10	73	10	17	26	44	1.82
73288--73326	14	2.8	14	92	0	60	46	15	0	38	1.46
74736--74837	21	4.9	21	74	3	89	22	19	36	21	1.95
74726--74808	42	2.0	42	85	0	112	21	18	38	21	1.93
74745--74837	42	2.2	42	80	3	107	22	17	39	20	1.92
75587--75636	18	2.8	18	100	0	100	42	6	20	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77372--77483	20	5.6	20	88	0	125	41	24	15	19	1.90
78114--78171	20	2.9	20	82	10	82	27	20	18	32	1.97
80946--80982	18	2.1	18	89	0	56	59	8	8	24	1.53
84339--85060	48	15.3	48	89	3	1058	34	31	15	19	1.93
85328--85498	93	1.8	94	88	3	265	36	16	11	34	1.86
85649--85801	76	2.0	78	93	2	265	43	15	12	28	1.82

Tables:   1

The End!