Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007127.1 Hibiscus syriacus cultivar Beakdansim tig00018622_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53932

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2453--2479
13
2.1
13
100
0
54
40
7
14
37
1.74
4141--4271
43
3.1
43
84
3
140
36
19
15
28
1.92
4141--4338
42
4.7
43
78
6
165
34
20
15
29
1.93
4309--4369
31
2.0
31
86
0
86
47
22
9
19
1.79
13062--13089
11
2.5
11
100
0
56
28
7
25
39
1.82
13684--13715
16
2.0
16
100
0
64
43
18
12
25
1.85
14739--14781
11
3.9
11
93
0
68
27
4
18
48
1.68
20739--20772
16
2.2
16
89
5
52
41
2
26
29
1.70
33274--34337
54
19.7
54
88
0
1457
28
18
20
33
1.96
34309--34362
25
2.2
25
86
0
72
25
16
16
40
1.89
34649--34691
19
2.4
19
84
7
54
23
30
18
27
1.98
34510--34671
66
2.5
65
87
6
213
33
22
16
27
1.95
42372--42414
21
2.0
22
86
4
61
11
2
25
60
1.43
43121--43245
64
1.9
65
83
6
164
32
20
17
30
1.95
45172--45233
22
2.9
22
95
2
108
37
8
11
43
1.70
45604--45676
36
2.0
36
91
0
119
41
6
23
28
1.80
45632--45742
45
2.5
44
84
5
152
39
7
21
31
1.81
50694--50725
15
2.1
16
94
5
57
59
0
0
40
0.97
50810--50863
27
2.1
24
86
10
72
53
0
1
44
1.11
52497--52547
3
17.0
3
80
8
59
62
1
0
35
1.06
52493--52543
24
2.1
25
85
10
70
58
1
0
39
1.09
52724--52950
117
1.9
117
92
3
386
33
21
21
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52841--53052
76
2.8
77
93
3
358
33
21
21
23
1.97
52907--53166
121
2.2
116
89
8
391
34
21
21
22
1.97
52994--53096
43
2.3
45
91
6
165
33
21
21
24
1.97
52698--53241
193
2.8
197
90
6
848
35
21
20
22
1.96
53032--53493
74
6.3
74
89
7
712
35
21
20
22
1.96
53032--53493
149
3.2
149
91
5
739
35
21
20
22
1.96
53443--53523
30
2.8
29
89
10
121
35
24
18
20
1.95

Tables:   1

The End!