Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007128.1 Hibiscus syriacus cultivar Beakdansim tig00018627_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62852

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4694--4723
15
2.0
15
100
0
60
20
13
6
60
1.55
6853--6914
12
5.2
12
96
0
115
25
8
32
33
1.85
11755--12144
185
2.1
185
90
2
606
45
7
3
43
1.51
12271--12310
19
2.1
19
86
9
55
25
7
17
50
1.72
17690--17730
8
5.2
8
82
5
57
34
0
29
36
1.58
17794--18327
128
4.2
128
96
1
975
23
25
20
31
1.98
17794--18327
254
2.1
256
96
1
975
23
25
20
31
1.98
18473--18497
13
1.9
13
100
0
50
36
8
24
32
1.84
18721--18801
27
2.8
28
75
22
78
38
1
3
56
1.25
18698--18798
33
3.1
32
85
9
132
35
2
4
56
1.36
18698--18800
32
3.2
31
82
13
127
36
2
4
55
1.36
19317--19410
21
4.5
21
86
5
127
21
26
32
19
1.97
19414--19461
21
2.3
21
85
0
60
22
12
39
25
1.89
21149--21192
19
2.4
19
81
7
56
54
2
0
43
1.12
21136--21223
17
5.1
18
70
21
55
59
2
0
38
1.10
21164--21235
34
2.1
34
82
10
85
63
5
0
30
1.17
29571--29686
36
3.2
36
82
3
128
34
2
17
45
1.62
34142--34207
21
3.4
20
66
21
59
30
3
18
48
1.63
34134--34254
37
3.3
37
80
10
124
33
3
17
46
1.64
36474--36531
19
3.2
19
75
9
66
3
13
31
51
1.58
37988--38053
25
2.6
25
95
4
114
50
9
12
28
1.70
42884--42970
46
1.9
45
81
11
106
24
17
4
54
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48990--49196
24
8.5
24
75
12
163
46
6
2
43
1.45
49233--49257
13
1.9
13
100
0
50
40
8
4
48
1.51
49238--49287
22
2.3
21
86
10
66
44
6
4
46
1.47
49549--49581
5
6.6
5
92
0
57
60
0
3
36
1.12
49660--49721
11
5.0
11
75
24
61
45
11
1
41
1.50
49660--49721
26
2.4
25
89
7
90
45
11
1
41
1.50
49683--49732
14
3.8
14
89
10
79
44
14
0
42
1.44
49683--49756
25
3.1
24
76
21
68
47
13
0
39
1.43
49857--49898
2
21.0
2
100
0
84
50
0
0
50
1.00
50022--50156
14
10.8
14
71
24
72
44
9
2
43
1.49
50062--50106
22
2.0
22
91
0
72
48
11
0
40
1.39
50022--50176
36
4.2
36
88
6
197
45
9
1
43
1.48
50095--50142
22
2.2
22
92
0
78
45
8
4
41
1.53
50131--50176
22
2.1
22
95
0
83
47
8
2
41
1.46
50083--50156
14
5.7
14
77
18
79
44
8
4
43
1.52
58575--58656
33
2.5
33
87
0
119
42
17
10
29
1.83
61204--61245
22
1.9
22
100
0
84
28
21
14
35
1.92

Tables:   1

The End!