genome.fa.s7129.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007129.1 Hibiscus syriacus cultivar Beakdansim tig00018629_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146715

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2497--2573	37	2.1	37	85	4	102	48	1	3	46	1.28
2718--2755	20	1.9	20	88	0	58	21	26	10	42	1.85
7278--7320	21	2.0	21	90	0	68	34	16	16	32	1.91
11711--11777	33	2.0	33	85	0	89	28	0	19	52	1.46
12431--12512	3	26.7	3	90	4	128	35	2	0	62	1.09
12522--12608	33	2.6	33	87	0	120	52	24	0	22	1.47
15514--15560	23	2.0	24	83	4	60	38	2	2	57	1.23
16551--16595	20	2.2	20	92	0	72	28	24	11	35	1.90
20827--20856	10	3.0	10	90	0	51	36	13	0	50	1.42
20954--20983	10	3.0	10	90	0	51	36	13	0	50	1.42
20930--20982	27	2.0	25	82	7	61	32	7	3	56	1.45
21668--21692	13	1.9	13	100	0	50	64	0	0	36	0.94
23948--24012	25	2.6	25	92	4	105	36	20	12	30	1.89
24379--24403	11	2.3	11	100	0	50	48	8	8	36	1.62
24464--24587	60	2.1	60	87	3	178	27	21	16	33	1.95
25671--25707	9	4.1	9	85	0	56	27	0	0	72	0.84
29262--29298	17	2.2	17	90	0	56	59	2	2	35	1.26
29874--29931	31	1.9	30	92	3	98	10	8	3	77	1.10
31753--31811	3	19.7	3	79	6	57	59	0	3	37	1.14
31730--31801	28	2.6	27	86	4	99	55	0	4	40	1.19
33971--35000	69	14.9	69	93	0	1411	27	30	17	24	1.97
40801--40865	31	2.1	32	91	2	105	32	18	1	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40801--40853	15	3.5	15	76	23	56	32	18	0	49	1.48
41383--41455	37	2.0	35	81	5	83	42	0	4	53	1.20
48264--48309	24	1.9	24	100	0	92	41	15	13	30	1.85
50185--50269	31	2.7	31	83	0	98	34	8	18	38	1.81
56565--56623	30	2.1	27	87	12	84	15	16	30	37	1.90
68034--68123	14	6.2	16	67	30	60	44	7	2	45	1.45
68047--68272	14	15.9	14	73	13	169	46	7	4	42	1.51
68047--68272	28	8.0	28	84	6	269	46	7	4	42	1.51
68047--68218	42	4.1	42	87	4	215	47	4	5	43	1.46
71781--71851	30	2.3	32	86	13	114	28	26	19	25	1.99
74633--74741	39	2.8	39	83	8	132	47	1	15	34	1.56
76305--76400	37	2.7	36	82	6	106	42	28	2	27	1.67
76975--77001	13	2.1	13	100	0	54	44	14	7	33	1.73
77317--77395	34	2.3	35	91	2	124	30	2	26	40	1.69
79790--80484	81	8.6	81	93	0	1102	36	17	22	23	1.94
81272--81347	29	2.6	31	76	17	83	59	3	0	36	1.16
81985--82727	255	2.9	255	97	0	1378	24	14	29	31	1.95
84158--84204	22	2.1	22	84	0	58	14	17	8	59	1.59
84174--84216	22	2.0	22	86	9	61	13	18	6	60	1.55
95423--95458	17	2.1	17	100	0	72	16	0	41	41	1.48
95602--95701	30	3.4	30	87	4	141	41	0	13	46	1.43
95754--95787	15	2.2	16	94	5	61	38	0	5	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96360--96764	60	7.4	50	81	15	325	45	13	0	40	1.43
96358--96546	60	3.2	60	98	0	360	44	14	0	41	1.45
96360--96768	18	19.5	22	62	24	75	45	13	0	40	1.44
96420--96764	109	3.2	109	80	8	412	46	13	0	40	1.43
96628--96765	10	13.8	10	69	25	53	46	13	0	39	1.44
96579--96768	60	3.2	60	94	0	337	46	13	0	40	1.44
96360--96764	218	1.9	219	95	0	740	45	13	0	40	1.43
96586--96754	39	4.3	39	63	23	100	46	13	0	40	1.42
104220--104247	2	14.0	2	100	0	56	50	0	0	50	1.00
110495--110528	15	2.3	15	85	5	52	41	2	2	52	1.31
111143--111175	2	16.5	2	100	0	66	51	0	0	48	1.00
111612--111663	20	2.6	20	87	6	79	42	23	17	17	1.89
111654--111855	57	3.5	58	93	1	345	35	23	15	25	1.94
111827--111875	21	2.4	21	93	3	82	30	26	16	26	1.97
111914--111952	20	2.0	20	100	0	78	33	20	15	30	1.94
111770--112359	77	7.6	77	74	13	416	35	21	15	27	1.93
111925--112102	57	3.1	57	92	0	302	35	21	16	26	1.94
112133--112176	21	2.2	19	81	18	54	36	22	13	27	1.92
112136--112183	20	2.3	21	86	10	64	31	25	14	29	1.95
112214--112259	20	2.3	20	92	7	76	36	23	10	28	1.89
112291--112336	20	2.3	20	92	0	74	36	23	10	28	1.89
112331--112480	37	4.2	37	86	4	166	36	22	16	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115453--115495	21	2.0	21	86	0	59	55	0	4	39	1.20
116536--116597	20	3.3	20	70	25	71	38	3	4	53	1.39
116477--116621	36	4.0	36	92	5	256	35	2	6	55	1.40
117301--117326	13	2.0	13	100	0	52	53	0	0	46	1.00
117838--117901	24	2.7	24	73	9	67	48	15	3	32	1.61
118415--118544	64	2.0	65	88	4	192	39	2	19	39	1.64
119537--119577	21	2.0	20	85	4	55	29	19	19	31	1.96
119640--119694	20	2.8	20	83	5	67	21	18	25	34	1.96
120643--120697	22	2.6	21	77	5	65	36	3	1	58	1.26
120861--120902	2	21.0	2	100	0	84	50	0	0	50	1.00
125412--125671	111	2.3	112	85	2	353	32	22	16	28	1.96
126394--126430	19	1.9	19	88	0	56	35	29	13	21	1.92
131128--131176	21	2.3	21	92	0	80	28	38	10	22	1.87
134374--134633	41	6.3	41	73	10	149	33	21	17	28	1.96
134538--134646	42	2.6	40	78	15	105	34	23	13	27	1.93
137163--137448	43	6.7	43	86	2	373	26	25	16	31	1.96
137163--137470	85	3.7	85	86	3	403	25	25	16	32	1.96
137163--137445	128	2.2	128	86	4	394	26	25	15	31	1.96
142243--142294	6	8.7	6	91	0	86	32	1	0	65	1.04
145199--145280	29	2.8	30	80	17	93	59	1	2	36	1.18
146344--146416	2	38.0	2	91	8	125	47	0	0	52	1.00

Tables:   1

The End!