genome.fa.s713.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000713.1 Hibiscus syriacus cultivar Beakdansim tig00001383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76107

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4215--4595	55	6.9	55	88	1	523	36	9	16	37	1.82
9156--9210	25	2.2	25	83	0	65	54	9	3	32	1.49
9561--10052	81	6.1	81	87	2	657	28	22	11	37	1.89
9770--9813	22	2.0	22	90	0	70	29	20	11	38	1.87
9932--9975	22	2.0	22	90	0	70	29	20	9	40	1.83
21488--21568	40	2.0	40	100	0	162	48	12	4	34	1.62
22267--22296	15	1.9	16	93	6	53	40	13	10	36	1.78
30059--30086	13	2.2	13	100	0	56	0	21	0	78	0.75
37108--37206	10	10.3	9	78	12	99	15	26	28	30	1.96
37108--37206	19	5.2	18	83	9	99	15	26	28	30	1.96
37108--37206	29	3.4	28	88	5	135	15	26	28	30	1.96
37202--37274	17	4.3	17	78	13	87	17	45	23	13	1.84
37220--37281	22	2.7	22	92	5	97	17	45	24	12	1.84
37264--37294	7	4.4	7	100	0	62	16	29	29	25	1.96
37208--37262	12	4.8	12	84	8	78	18	45	23	12	1.83
38163--38239	31	2.5	31	82	2	100	14	25	31	28	1.95
38163--38286	63	2.0	63	82	6	153	16	27	29	26	1.97
44554--44591	7	5.4	7	100	0	76	15	28	28	26	1.96
45457--45532	30	2.5	30	80	4	89	14	26	30	28	1.95
48213--48314	55	1.9	52	81	13	120	54	1	3	39	1.30
49780--49837	25	2.4	25	82	2	64	32	15	3	48	1.62
52264--52315	26	2.0	26	100	0	104	26	11	19	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57075--57130	2	28.0	2	100	0	112	50	0	0	50	1.00
57737--57771	8	4.4	8	88	0	52	48	11	0	40	1.39
63017--63046	13	2.2	14	94	5	53	0	26	0	73	0.84
63642--63689	26	1.9	25	87	8	71	50	8	2	39	1.44
64264--64379	42	2.8	42	93	0	187	17	16	18	47	1.83
64555--64657	31	3.3	31	77	14	88	50	0	0	48	1.07
64590--64658	22	3.1	22	72	15	61	52	1	0	46	1.09
64577--64657	31	2.5	32	80	15	96	50	1	0	48	1.08
64594--64694	52	1.9	52	82	11	127	49	0	0	48	1.14
64661--64742	31	2.8	28	77	16	87	42	1	1	54	1.15
64761--64798	19	2.1	18	90	9	60	42	10	2	44	1.52
64897--64966	20	3.5	20	96	0	131	35	14	10	40	1.79
64897--64975	40	2.0	40	89	0	122	35	15	8	40	1.78
64949--65030	15	5.5	15	85	2	112	35	18	7	39	1.78
64949--65030	30	2.8	30	90	1	130	35	18	7	39	1.78
64949--65034	45	1.9	44	92	2	145	33	17	6	41	1.76
66002--66044	21	2.0	21	100	0	86	51	0	13	34	1.42
67226--67275	9	5.3	9	79	9	55	14	28	30	28	1.95
67226--67275	19	2.7	18	81	9	64	14	28	30	28	1.95
67272--67329	5	10.8	5	78	14	62	18	51	22	6	1.70
67272--67336	22	3.0	22	100	0	130	18	49	23	9	1.76
68222--68294	31	2.3	32	83	2	94	16	27	31	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68218--68341	63	2.0	63	82	6	153	17	28	28	25	1.98
74506--74624	9	12.4	9	75	11	85	15	24	29	30	1.96
74505--74543	21	1.9	21	94	5	71	15	25	25	33	1.95
74505--74621	19	6.1	19	82	10	112	17	23	29	30	1.97
74503--74579	29	2.6	30	85	10	113	18	24	28	28	1.98
74648--74678	7	4.4	7	100	0	62	16	29	29	25	1.96
74622--74658	19	1.9	19	100	0	74	16	51	21	10	1.74
75530--75603	30	2.4	30	79	2	85	14	24	32	28	1.95

Tables:   1

The End!