genome.fa.s7130.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007130.1 Hibiscus syriacus cultivar Beakdansim tig00018633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102725

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5236--5573	114	3.0	114	93	0	559	34	14	19	31	1.92
6287--7184	113	7.9	113	94	1	1476	37	13	18	29	1.90
7471--7517	3	15.7	3	95	0	58	57	0	0	42	0.98
7463--7553	18	5.2	18	78	5	105	51	0	0	48	1.00
7495--7541	3	15.3	3	91	4	58	42	0	0	57	0.98
14935--15014	40	2.0	40	90	0	124	37	6	13	42	1.70
15044--15110	32	2.1	31	81	8	73	32	7	10	49	1.65
15054--15121	32	2.1	32	89	5	102	30	7	7	54	1.55
38201--38249	2	25.0	2	95	4	91	51	0	0	48	1.00
38408--38459	13	4.0	13	92	0	77	30	13	23	32	1.93
38411--38461	26	2.0	26	96	0	93	31	13	23	31	1.93
38409--38468	13	4.6	13	87	0	75	31	16	21	30	1.96
38412--38468	26	2.2	26	90	0	87	33	15	19	31	1.93
41486--41511	2	13.0	2	100	0	52	50	0	0	50	1.00
41909--42048	49	2.9	48	83	8	176	55	12	12	19	1.69
41921--42048	47	2.7	46	83	9	150	54	12	14	18	1.70
45949--46947	29	34.4	29	77	9	781	44	17	5	32	1.70
54218--54568	30	12.1	29	86	6	446	45	17	3	33	1.67
54218--54568	57	6.1	57	84	7	440	45	17	3	33	1.67
60852--60890	21	1.9	21	89	5	62	30	10	0	58	1.31
60851--60896	20	2.2	22	81	14	62	28	10	0	60	1.30
61230--61307	40	2.0	40	94	2	140	42	15	7	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63779--63809	16	1.9	16	93	0	53	22	0	12	64	1.27
64262--64313	19	2.7	20	83	16	65	15	9	3	71	1.27
68282--68347	13	4.9	13	78	14	62	48	4	3	43	1.38
68252--68368	26	4.4	28	77	10	95	45	5	3	46	1.42
68312--68354	13	3.3	13	96	0	77	53	4	0	41	1.21
68303--68377	2	38.0	2	70	17	50	46	2	1	49	1.24
68479--68527	17	2.7	17	87	9	62	46	2	2	48	1.25
68558--68739	34	5.1	34	72	20	90	54	2	7	35	1.40
68566--68741	6	27.7	6	72	18	67	55	2	6	35	1.39
68591--68637	17	2.8	17	96	0	85	59	2	6	31	1.34
68658--68741	26	3.2	26	94	3	143	55	3	5	34	1.41
72719--72757	19	2.1	19	86	13	55	30	5	5	58	1.41
78479--78545	19	3.5	19	83	0	89	17	28	29	23	1.97
80082--80152	34	2.1	34	84	5	90	29	9	14	46	1.76
80612--80682	31	2.3	29	77	13	79	14	30	29	25	1.94
81304--81386	25	3.4	25	77	12	68	51	2	8	37	1.45
81352--81431	20	3.7	22	74	17	78	56	0	6	37	1.25
81389--81479	2	48.0	2	71	18	61	52	1	3	42	1.24
81303--81428	57	2.2	57	83	8	150	52	1	7	38	1.40
81354--81412	7	8.6	7	77	17	52	55	0	6	37	1.26
83469--83642	2	89.0	2	70	18	109	52	2	4	41	1.33
83446--83571	57	2.2	56	83	9	157	53	1	6	38	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83497--83555	7	8.6	7	77	17	52	55	0	6	37	1.26
84184--84357	42	4.2	42	96	0	314	22	4	21	52	1.63
84729--84874	21	6.4	22	71	18	77	56	3	5	34	1.39
84729--84856	7	16.4	8	67	18	56	57	3	4	34	1.38
84704--84773	29	2.5	28	78	17	74	58	2	5	32	1.36
84893--85133	15	16.3	15	64	27	81	51	3	9	34	1.53
84908--84967	27	2.3	26	82	5	77	51	5	8	35	1.54
85051--85092	22	1.9	22	90	0	66	57	7	9	26	1.56
85087--85149	14	4.4	14	76	18	51	53	0	9	36	1.33
85079--85230	22	7.2	20	78	12	121	52	1	7	38	1.40
85051--85185	52	2.6	52	81	9	136	53	2	9	34	1.49
85078--85217	43	3.3	41	83	10	176	52	2	7	37	1.43
85078--85230	41	3.6	41	83	9	168	52	1	7	38	1.40
85276--85331	2	28.5	2	77	16	55	46	1	1	50	1.22
85421--85564	2	70.0	2	74	13	114	43	5	1	50	1.34
85705--85760	2	28.0	2	100	0	112	50	0	0	50	1.00
91321--91362	18	2.4	18	88	4	59	80	2	0	16	0.81
98015--98103	44	2.0	44	84	2	115	29	23	25	21	1.99
98034--98119	44	2.0	44	88	0	127	36	22	17	24	1.95
98149--98211	29	2.2	29	82	5	74	42	7	17	31	1.78

Tables:   1

The End!