genome.fa.s7132.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007132.1 Hibiscus syriacus cultivar Beakdansim tig00018636_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149719

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4518--4548	13	2.4	13	94	0	53	54	0	0	45	0.99
12972--13022	19	2.7	19	96	0	93	29	25	21	23	1.99
13070--13112	21	2.0	22	90	4	70	20	23	16	39	1.92
13117--13178	20	3.1	20	97	0	115	41	17	19	20	1.90
13377--13439	22	2.9	22	87	0	90	26	39	12	20	1.89
13776--13914	20	7.4	19	73	13	90	18	19	21	40	1.92
13884--13939	20	2.8	20	86	0	76	10	16	23	50	1.76
13903--13946	20	2.2	20	87	0	61	9	13	22	54	1.67
15817--15973	20	8.5	20	76	18	135	41	21	19	17	1.90
15840--15994	34	4.4	34	74	13	152	42	21	20	16	1.89
16018--16061	20	2.2	20	96	4	81	13	20	27	38	1.90
18027--18062	14	2.6	14	90	0	54	30	0	22	47	1.52
18270--18338	20	3.5	20	93	0	120	15	21	26	36	1.94
18252--18358	40	2.9	35	80	14	126	14	23	24	37	1.93
20779--20830	24	2.2	24	82	0	59	36	21	19	23	1.95
21641--21787	20	7.3	20	87	0	186	27	17	24	30	1.97
21640--21787	60	2.5	60	86	0	206	27	17	24	30	1.97
21796--21848	21	2.5	21	84	0	70	35	16	24	22	1.95
22287--22598	75	4.2	75	87	0	383	42	11	12	33	1.79
22606--22664	23	2.6	23	75	5	57	38	10	5	45	1.60
23204--23424	108	2.1	106	86	3	300	34	12	11	40	1.80
23313--23737	224	1.9	226	83	7	551	35	13	11	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25924--25971	4	12.5	4	89	8	73	29	0	20	50	1.49
30243--30305	23	2.6	24	78	19	60	50	1	0	47	1.10
30399--30439	20	2.2	20	86	8	59	58	0	0	41	0.98
36487--36652	31	5.4	31	84	2	201	15	27	27	30	1.96
36504--36652	62	2.4	62	89	1	228	16	27	26	29	1.97
49605--49656	23	2.2	23	96	3	95	42	0	13	44	1.44
49605--49656	12	4.2	13	81	18	67	42	0	13	44	1.44
49605--49670	23	2.8	23	88	4	78	42	0	12	45	1.41
52080--52121	6	7.2	6	81	13	52	66	0	0	33	0.92
52086--52120	16	2.2	16	94	0	61	65	0	0	34	0.93
52275--52310	2	18.0	2	100	0	72	50	0	0	50	1.00
52584--52683	50	2.0	50	92	0	164	40	8	16	36	1.77
57690--57714	12	2.1	12	100	0	50	8	16	24	52	1.70
61006--61070	21	3.3	20	85	8	80	64	0	4	30	1.14
61023--61082	21	2.9	21	87	5	68	61	0	3	35	1.12
61064--61138	18	4.2	17	70	9	60	61	2	5	30	1.32
61019--61116	29	3.4	28	78	12	85	62	1	4	32	1.21
64698--64732	5	7.0	5	100	0	70	0	0	20	80	0.72
69740--69789	26	2.0	26	88	4	75	56	0	2	42	1.11
85404--85743	171	2.0	172	90	3	533	40	16	11	31	1.84
88292--88575	142	2.0	142	99	0	559	22	14	17	45	1.85
90639--90704	26	2.4	26	85	7	78	37	33	6	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90654--90705	26	2.0	26	92	3	86	36	30	3	28	1.75
90754--90798	19	2.3	20	84	3	56	51	2	0	46	1.13
92579--92612	6	5.7	6	85	0	50	47	17	2	32	1.63
94066--94100	3	11.3	3	87	6	52	62	0	31	5	1.18
94923--94964	21	2.0	21	100	0	84	42	0	14	42	1.45
95547--95768	110	2.0	111	96	1	410	36	18	12	31	1.88
100807--100836	14	2.1	14	93	0	51	40	16	16	26	1.90
118452--118482	12	2.6	12	89	0	53	19	22	0	58	1.40
118509--118533	5	5.0	5	100	0	50	20	0	0	80	0.72
118826--119137	156	2.0	156	98	1	608	32	14	16	35	1.90
120680--120728	24	2.0	24	88	7	73	18	8	44	28	1.78
120691--120813	39	3.2	39	75	0	129	20	8	43	27	1.80
122116--122174	21	2.8	21	81	0	82	35	30	6	27	1.83
122116--122195	42	1.9	42	87	5	117	36	28	7	27	1.84
124671--124780	51	2.2	51	94	0	193	27	34	9	29	1.87
125904--125954	2	25.5	2	100	0	102	49	0	0	50	1.00
134427--134543	35	3.2	36	89	6	166	43	18	5	32	1.72
134472--134535	20	3.4	20	66	29	59	45	18	4	31	1.70
139031--139122	35	2.6	36	88	6	134	44	20	4	30	1.71
143159--143191	16	2.0	17	94	5	59	42	18	0	39	1.50
143598--143648	27	1.9	27	84	4	68	43	21	1	33	1.64
143617--143730	34	3.3	35	85	8	144	42	18	7	31	1.77

Tables:   1

The End!