Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007133.1 Hibiscus syriacus cultivar Beakdansim tig00018650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19083
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Found at i:6059 original size:814 final size:814
Alignment explanation
Indices: 1--7851 Score: 13515
Period size: 814 Copynumber: 9.7 Consensus size: 814
*
1 GAAT-TTGAAGAG-TTGAGTGTGAAG-AAACCATGAATGGAGAGTGGAACTCAAAAAGAAC-AGA
1 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATTGAGAGTGGAACTCAAAAAGAACAAGA
*
62 GTGTAAAGGGAGCATACGATAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGA
66 GTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGA
127 GAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATC-TTTCTTCATATTATTTCGT
131 GAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGT
* *
191 TTGATTTGCAGGTTATTCCAAAGGGCATGCAATT--AAATTTGAGGAATCAAATTTGTCCATTGA
196 TTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAA-TTGATGAATCAAATTTGTCCATTGA
* *
254 GGTTCCAAATGATTTAA-ATTTGGTATTCCAAAACATGTGCTCTTTGATA-TCTAAGTACGTTCA
260 AGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTGCTCTTTGATATTCTATGTACGTTCA
* * * *
317 TTCTACATTCAAAGTTCAAACAATCTCGAGAAAAGGAAGTTTCAATGAACCGATCC-ATGTGGAC
325 TTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGAC
381 CTTAAACAAATAAA-TCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATC
390 CTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATC
*
445 TACTTCTAACTTTGCTTTATTATTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATA
455 TACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATA
*
510 GA-C--GTACTTGCGCCC-TTTTAATTGGGAGATATGAAGATGAAGTC--GGGCGATGTTGCTTC
520 GAGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTC
* *
569 CATGAA--CAAGCCATCTACTTCTCGGATATCCTTGGCACTGTGCTAAACGAGCATTGCATGATG
585 CATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATG
* * *
632 GGTTTTTAAAATCATTATTCATTCATCCATGGGAGAAGG-GAATCACGTTAGTACAGTTGCCATC
650 GGTTTTT-AAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATC
* *
696 ACACAAAGTACTTCAAGATTAAC-ACAACTAAAGAAAAACTTTGATGCAATGCAAAAAG-ACAGT
714 ACACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTATGCAAAAAGAACATT
759 GAGAGTAAAAAAGGC-TTTGGAGTAGTTGAAAATGA
779 GAGAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGA
* *
794 GAATACTGAAGAGATTGACTGTGAAGAAAACCATGAATGTGAGAGTGGAACTC--AAAGAACAAG
1 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAAT-TGAGAGTGGAACTCAAAAAGAACAAG
* * * * *
857 AG-GTAAAGGGTGAATACGAGA--A-TA-G-AGAAGAGAAA-TTCAGAAGGGACACGAGCATGAT
65 AGTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAG
*
915 AG-AAA-AA--TGAAGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCG
130 AGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCG
976 TTTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAATTGATGAATCAAATTTGTCCATTGA
195 TTTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAATTGATGAATCAAATTTGTCCATTGA
* *
1041 AGTTCCAAATGATTTAACATTTGGTATTCC-AAACATGTGCTATTTGATATTCTAAGTACGTTTC
260 AGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTGCTCTTTGATATTCTATGTACG-TTC
* *
1105 ATTCTACATTCAAAGTTCAAATAATCTCAAGAAAGGGAAGTTTCAATAAACCTATCCAATGAGGA
324 ATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGA
*
1170 CCTTAAACAAATAAATTTATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAA-TAT
389 CCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTAT
*
1234 CTACTTAT-ACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTTAGAAGTCA
454 CTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAG-TTAGAAGTCA
* * * * *
1298 TAGTGCAAGTAATTACGCCC-TTTTAATTGGGAGATATGAA-ATGAAGTCACGTGCGATGTTTCT
518 TAGAGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCT
* *
1361 TCCATG-ATTCAAGCC-TCTACTTCTGGGATATCCTTGGCACTGTGATAAACGAGCATTGCATGA
583 TCCATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGA
* * *
1424 TGGCTTTTTAAAATCATTATTCATTCATCCATGGGAGAAGGAGAAT--CGTTAGTACAATTGCCA
648 TGGGTTTTT-AAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCA
* *
1487 TCACACAAAGTACTTTAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGC-AAAAGAAAC
712 TCACACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTATGCAAAAAG-AAC
1551 ATTGAGAGTAAAAAAGGCATTTGGAGTAGTTGAAAAATGA
776 ATTGAGAGTAAAAAAGGCATTTGGAGTAGTTG-AAAATGA
1591 GAATATTGAAGAGATTGA-TGTGAAGAAAACCATGAATTGAGAGTGGAACTCAAAAAGAACAAGA
1 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATTGAGAGTGGAACTCAAAAAGAACAAGA
* * *
1655 GTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAAATTTCAGAAGGGACATGAGCATGATA
66 GTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGA
* *
1720 GAAAATAATGTGA-GAGAATGAAGTTTGACCTCTATCAATCAATCTTTTCTTTATATTATTTCGT
131 GAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGT
1784 TTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAATTGATGAATC-AATTTGTCCATTGAA
196 TTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAATTGATGAATCAAATTTGTCCATTGAA
*
1848 GTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTGCTCTTTGATATTCTAAGTACGTTCAT
261 GTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTGCTCTTTGATATTCTATGTACGTTCAT
* *
1913 TCTACATTCAAAGTTCAAATAATCTCAAGAAAGGGAAGTTTCAATAAACCTATCCAAT---GACC
326 TCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGACC
1975 TTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCT
391 TTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCT
*
2040 ACTTATAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTTCATA
456 ACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAG-TCATA
* * * *
2105 GTGCAAGTA-ATACGCCCTTTTTAATTGGGAGATATGAAGATCAAGTCATGTGCGATGTTGCTTC
520 GAGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTC
*
2169 CATTAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGAT-
585 CATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATG
* *
2233 GGTTTTTAAAATCATTATTCATTCATCC-TGGGAGAAGGAGAATCACGTTAGTACAATTGCCATC
650 GGTTTTT-AAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATC
2297 ACACAAAGTACTTCAAGATTAACAACAACTAAAG-AAAAC-TTGATGC-ATGCAAAAAGAACATT
714 ACACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTATGCAAAAAGAACATT
2359 GAGAGT-AAAAAGGCATTTGGAGTAGTTGAAAATGA
779 GAGAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGA
2394 GAATA-TGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAG
1 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAAT-TGAGAGTGGAACTCAAAAAGAACAAG
* *
2458 AGTGTAAAGGGAGCATACGATAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAT
65 AGTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAG
2523 AGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATC-ATCTTTTCTTCATATTATTTCG
130 AGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCG
* *
2587 TTTGATTTGCAGGTTATTCCAAAGGGCATGCAATT-AAAATTTGATGAATCAAATTTGT-CATTG
195 TTTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAA-TTGATGAATCAAATTTGTCCATTG
* *
2650 AGGTTCCAAATGATTTAACATTTGGT-TTCCAAAACATGTGCTATTTGATATTCTA-GTACGTTC
259 AAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTGCTCTTTGATATTCTATGTACGTTC
* *
2713 ATTCTACATTCAAA----AAACAATCTCGAGAAA-GGAAGTTTCAATGAACCTATCCAATGTGGA
324 ATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGA
2773 CCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTAT
389 CCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTAT
* *
2838 CTACTTCTTACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGA-TTAAAAGTCAT
454 CTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCAT
* *
2902 ATAGCAAGTACTTGCACCCTTTTTAA-TGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTT
519 AGAGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTT
*
2966 CTATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGAT
584 CCATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGAT
* * * * *
3031 GGGTTTTTAAATCATTTTTCATTCATCCATGGGAGAAGGATAATCCCGTTAGTACAATTGCCATC
649 GGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATC
* *
3096 ACACAAAGTACTTCAAGATT---AACAACTAAATAAAAACTTGGATGCTATGCAAAAAGAACATT
714 ACACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTATGCAAAAAGAACATT
3158 GAGAGT-AAAAAGGCATTTGGAGTA-TTGAAAATGA
779 GAGAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGA
*
3192 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATG-AGTGAGAGTGGAACTCAAAAAGAACAAGA
1 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATTGAGAGTGGAACTCAAAAAGAACAAGA
* *
3256 GTGTAAAGGGAGCATACGATAGGAGTATGAAG-AGAGAAATTTCAAAAGGGACATGAGCATGATA
66 GTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGA
3320 GAAAATAATGTGAGGAGAATGAAG-TTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGT
131 GAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGT
* *
3384 TTGATTTGCAGGTTATTCCAAAGGGCATGC-ATT-AAAATTTGATGAATCAATTTTGTCCATTG-
196 TTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAA-TTGATGAATCAAATTTGTCCATTGA
* *
3446 AGTTCCAAATGATTT-ACATTTGGTATTCCAAAA-ATGTGCTATTTGATATTCTAAGTACGTTCA
260 AGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTGCTCTTTGATATTCTATGTACGTTCA
*
3509 TTCTAC-TTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGTGGAC
325 TTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGAC
3573 CTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATC
390 CTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATC
3638 TACTTCTAACTTTGCTTTA-TTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATA
455 TACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATA
* *
3702 GAGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCACGGGCGATGTTGCTTC
520 GAGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTC
* *
3767 CATGAATTCAAGCCATCTACTTATCGGATGTCCTTGGCAC-GTGATAGACGAGCATTGCATGATG
585 CATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATG
3831 GGTTTTTAAATCATTATTCATTCATCCATGGGAG-AGGAGAATCACGTTAG--TAATTGCCATCA
650 GGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATCA
*
3893 CACAAACTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGC--TGCAAAAAGAACATTG
715 CACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTATGCAAAAAGAACATTG
*
3956 AGAGTAAAACAGGCATTTGGAGTAGTTGAAAATGA
780 AGAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGA
* * *
3991 GAATACTGAAGAGATTGACTGTGAAGAAAACCATGAATGGAGAGTGGAACTCAAAAAGAACAAGA
1 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATTGAGAGTGGAACTCAAAAAGAACAAGA
* *
4056 GTGTAAAGGGAGCATACGATAGGATTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGA
66 GTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGA
4121 GAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGT
131 GAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGT
*
4186 TTGATTTGCAGGTTATTCCAAAGGCCATGCTATTGCAAATTGATGAATCAAATTTGTCCATTGAA
196 TTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAATTGATGAATCAAATTTGTCCATTGAA
* *
4251 GTTCCAAATGATTTAACGTTTGGTATTCCAAAACATGTGCTCTTTGATATTTTATGTACGTTCAT
261 GTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTGCTCTTTGATATTCTATGTACGTTCAT
4316 TCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGACC
326 TCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGACC
4381 TTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCT
391 TTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCT
4446 ACTTCTAACTTTGCTTTA-TTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAG
456 ACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAG
4510 AGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCC
521 AGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCC
* *
4575 ATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGCGATAGACGAGCATTGCATGATGG
586 ATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGG
4640 GTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATCAC
651 GTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATCAC
*
4705 ACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTACGCAAAAAGAACATTGA
716 ACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTATGCAAAAAGAACATTGA
* *
4770 GAGTAAAAAAGGCATTTGGAGTGGTTAAAAATGA
781 GAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGA
*
4804 GAATATTGAAGAGATTGTGTGTGAAGAAAACCATGAATTGAGAGTGGAACTC-AAAAGAACAAGA
1 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATTGAGAGTGGAACTCAAAAAGAACAAGA
*
4868 GTGTAAAGGGAGCATACGAGAGGATTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCA-GAGA
66 GTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGA
4932 GAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGT
131 GAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGT
* * *
4997 TTGATTTGCAGGTTATTCCAAAGGCCATGCTATTGCAAATTGATGAATCAAATTTATCCATTGAT
196 TTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAATTGATGAATCAAATTTGTCCATTGAA
* * *
5062 GTTCCAAATGATTTAACGTTTTGTATTCCAAAACATGTGCTCTTTGATATTTTATGTACGTTCAT
261 GTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTGCTCTTTGATATTCTATGTACGTTCAT
*
5127 TCTACATTCAAAGTTCAAACAATCTCAAGAAATGGAAGTTTCAATGAACCTATCCAATGAGGACC
326 TCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGACC
5192 TTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCT
391 TTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCT
5257 ACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAG
456 ACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAG
5322 AGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCC
521 AGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCC
5387 ATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGG
586 ATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGG
5452 G-TTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATCAC
651 GTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATCAC
*
5516 ACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTACGCAAAAAGAACATTGA
716 ACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTATGCAAAAAGAACATTGA
5581 GAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGA
781 GAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGA
*
5615 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATTTGAGAGTGGATCTCAAAAAGAACAAG
1 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAA-TTGAGAGTGGAACTCAAAAAGAACAAG
*
5680 AGTGTAAAGGGAGCATACGAGAGGATTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAG
65 AGTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAG
5745 AGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCG
130 AGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCG
*
5810 TTTGATTTGCAGGTTATTCCAAAGGCCATGCTATTGCAAATTGATGAATCAAATTTGTCCATTGA
195 TTTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAATTGATGAATCAAATTTGTCCATTGA
* *
5875 AGTTCCAAATGATTTAACGTTTGGTATTCCAAAACATGTGCTCTTTGATATTTTATGTACGTTCA
260 AGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTGCTCTTTGATATTCTATGTACGTTCA
5940 TTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGAC
325 TTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGAC
6005 CTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATC
390 CTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATC
6070 TACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATA
455 TACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATA
6135 GAGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTC
520 GAGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTC
6200 CATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATG
585 CATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATG
*
6265 GGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTTCCATCA
650 GGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATCA
*
6330 CACAAAGTACTTCAAGATTAACAACAACTAAAG-AAAACTTTGATGCTACGCAAAAAGAACATTG
715 CACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTATGCAAAAAGAACATTG
*
6394 AGAGTAAAACAGGCATTTGGAGTAGTTGAAAATGA
780 AGAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGA
6429 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATTTGAGAGTGGAACTCAAAAAGAACAAG
1 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAA-TTGAGAGTGGAACTCAAAAAGAACAAG
*
6494 AGTGTAAAGGGAGCATACGAGAGGATTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAG
65 AGTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAG
6559 AGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCG
130 AGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCG
* * *
6624 TTTGATTTGCAGGTTATTCCAAAGGCCATGCTATTGCAAATTGATTAATCAAGTTTGTCCATTGA
195 TTTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAATTGATGAATCAAATTTGTCCATTGA
* *
6689 AGTTCCAAATGATTTAACGTTTGGTATTCCAAAACATGTGCTCTTTGATATTTTATGTACGTTCA
260 AGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTGCTCTTTGATATTCTATGTACGTTCA
*
6754 TTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGCAC
325 TTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGAC
6819 CTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATC
390 CTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATC
*
6884 TACTTCTAACTTTGATTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATA
455 TACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATA
*
6949 GAGCAAGTACTTACGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTC
520 GAGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTC
*
7014 CATGAATTCAAGCCATCTACTTCTTGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATG
585 CATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATG
7079 GGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATCA
650 GGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATCA
7144 CACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTATGCAAAAAGAACATTG
715 CACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTATGCAAAAAGAACATTG
7209 AGAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGA
780 AGAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGA
7244 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATTTGAGAGTGGAACTCAAAAAGAACAAG
1 GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAA-TTGAGAGTGGAACTCAAAAAGAACAAG
*
7309 AGTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTC-AAAGGGACATGAGCATGAT
65 AGTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAG
*
7373 AGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTTATATTATTTCG
130 AGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCG
* * * *
7438 TTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTTCAATTTGATGAATCAAATTTTTCCATTGA
195 TTTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAATTGATGAATCAAATTTGTCCATTGA
* *
7503 AGTTCCAAATGATTTAACGTTTGGTATTCCAAAACATGTGCTCTTTGATATTTTATGTACGTTCA
260 AGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTGCTCTTTGATATTCTATGTACGTTCA
*
7568 TTCTACATTCAAAGTCCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGAC
325 TTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGAC
*
7633 CTTAAACAAATAAATTCATTTATTCATAAAATTGATTATTTCATTTTCTTTGATTTTGAATTATC
390 CTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATC
*
7698 TACTTCTTACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATA
455 TACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATA
* *
7763 TAGCTAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTC
520 GAGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTC
*
7828 TATGAATTCAAGCCATCTACTTCT
585 CATGAATTCAAGCCATCTACTTCT
7852 ATGAAGTCAA
Statistics
Matches: 6782, Mismatches: 173, Indels: 185
0.95 0.02 0.03
Matches are distributed among these distances:
785 34 0.01
786 52 0.01
787 60 0.01
788 28 0.00
789 121 0.02
790 54 0.01
791 46 0.01
792 10 0.00
793 81 0.01
794 174 0.03
795 155 0.02
796 200 0.03
797 158 0.02
798 262 0.04
799 418 0.06
800 252 0.04
801 57 0.01
802 104 0.02
803 160 0.02
804 286 0.04
805 148 0.02
806 194 0.03
807 456 0.07
808 159 0.02
809 16 0.00
811 597 0.09
812 260 0.04
813 167 0.02
814 1806 0.27
815 267 0.04
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (814 bp):
GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATTGAGAGTGGAACTCAAAAAGAACAAGA
GTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGA
GAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGT
TTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAATTGATGAATCAAATTTGTCCATTGAA
GTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTGCTCTTTGATATTCTATGTACGTTCAT
TCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCCAATGAGGACC
TTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCT
ACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAG
AGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCC
ATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGG
GTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATCAC
ACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTATGCAAAAAGAACATTGA
GAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGA
Found at i:8131 original size:302 final size:303
Alignment explanation
Indices: 7559--8153 Score: 1075
Period size: 302 Copynumber: 2.0 Consensus size: 303
7549 GATATTTTAT
7559 GTACGTTCATTCTACATTCAAAGTCCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCC
1 GTACGTTCATTCTACATTCAAAGTCCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCC
* *
7624 AATGAGGACCTTAAACAAATAAATTCATTTATTCATAAAATTGATTATTTCATTTTCTTTGATTT
66 AATGAGCACCTTAAACAAATAAATTCATTTATTCATAAAATTGATTATTTCATTTTATTTGATTT
*
7689 TGAATTATCTACTTCTTACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTA
131 TGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTA
* *
7754 GAAGTCATATAGCTAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGA
196 GAAGTCATATAGCAAGTACTTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGA
7819 TGTTGCTTCTATGAATTCAAGCCATCTACTTCTATGAAGTCAA
261 TGTTGCTTCTATGAATTCAAGCCATCTACTTCTATGAAGTCAA
* **
7862 GTACGTTCATTCTACATTCATA-TTTAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCC
1 GTACGTTCATTCTACATTCAAAGTCCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCC
*
7926 AATGAGCACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTATTTGATTT
66 AATGAGCACCTTAAACAAATAAATTCATTTATTCATAAAATTGATTATTTCATTTTATTTGATTT
* *
7991 TGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGATGTGTTA
131 TGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTA
8056 GAAGTCATATAGCAAGTACTTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGA
196 GAAGTCATATAGCAAGTACTTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGA
*
8121 TGTTGCTTCTATGAATTCAAGTCATCTACTTCT
261 TGTTGCTTCTATGAATTCAAGCCATCTACTTCT
8154 CGGATGTCCT
Statistics
Matches: 280, Mismatches: 12, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
302 259 0.93
303 21 0.08
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (303 bp):
GTACGTTCATTCTACATTCAAAGTCCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTATCC
AATGAGCACCTTAAACAAATAAATTCATTTATTCATAAAATTGATTATTTCATTTTATTTGATTT
TGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTA
GAAGTCATATAGCAAGTACTTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGA
TGTTGCTTCTATGAATTCAAGCCATCTACTTCTATGAAGTCAA
Found at i:9456 original size:815 final size:815
Alignment explanation
Indices: 7860--9865 Score: 3681
Period size: 815 Copynumber: 2.5 Consensus size: 815
7850 CTATGAAGTC
* *
7860 AAGTACGTTCATTCTACATTCATA-TTTAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTAT
1 AAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTAT
* * *
7924 CCAATGAGCACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTATTTGAT
66 CCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGAT
* *
7989 TTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGATGTGT
131 TTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGT
8054 TAGAAGTCATATAGCAAGTACTTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGC
196 TAGAAGTCATATAGCAAGTACTTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGC
*
8119 GATGTTGCTTCTATGAATTCAAGTCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGC
261 GATGTTGCTTCTATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGC
8184 ATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTAC
326 ATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTAC
*
8249 AATTGCCATCACACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAA
391 AATTGCCATCACACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTGGATGCAATGCAA
8314 AAAGAACATTGAGAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAG
456 AAAGAACATTGAGAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAG
* *
8379 TGTGAAGAAAACCATGAATTTGAGAGTGGAACTCAATAAGAACAAGAGTGTAAAGGGAGCATACG
521 TGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACG
*
8444 AGATGAGTATGAAGAAGAGAAATTTCAAAAGGGACATAAGCATGAGAGAAAATAATGTGAGGAGA
586 AGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATAAGCATGAGAGAAAATAATGTGAGGAGA
*
8509 ATGAAGTTTGACCTCTATTAATCAATCTTTTCTTTATATTATTTCGTTTGATTTGCAGGTTATTC
651 ATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTC
* **
8574 CAAAGGGCATTCAATTTCAATTTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACA
716 CAAAGGGCATGCAATTAAAATTTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACA
8639 TTTGGTATTCCAAAACATGTGCTATTTGATATTCT
781 TTTGGTATTCCAAAACATGTGCTATTTGATATTCT
*
8674 AAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAGGAAGTTTCAATGAACCTAT
1 AAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTAT
8739 CCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGAT
66 CCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGAT
*
8804 TTTGAATTATCTACTTCTTACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGT
131 TTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGT
*
8869 TAAAAGTCATATAGCAAGTACTTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGC
196 TAGAAGTCATATAGCAAGTACTTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGC
8934 GATGTTGCTTCTATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGC
261 GATGTTGCTTCTATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGC
* *
8999 ATTGCATGATGGGTTTTTAAATCATTTTTCATTCATCCATGGGAGAAGGATAATCACGTTAGTAC
326 ATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTAC
* *
9064 AATTGCCATCACACAAAGTACTTCAAGATTAACAACAACTAAATAAAAACTTGGATGCTATGCAA
391 AATTGCCATCACACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTGGATGCAATGCAA
9129 AAAGAACATTGAGAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAG
456 AAAGAACATTGAGAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAG
9194 TGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACG
521 TGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACG
* * *
9259 ATAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGATAGAAAATAATGTGAGGAGA
586 AGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATAAGCATGAGAGAAAATAATGTGAGGAGA
9324 ATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTC
651 ATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTC
*
9389 CAAAGGGCATGCAATTAAAATTTGATGAATCAAATTTGTCCATTGAGGTTCCAAATGATTTAACA
716 CAAAGGGCATGCAATTAAAATTTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACA
9454 TTTGGTATTCCAAAACATGTGCTATTTGATATTCT
781 TTTGGTATTCCAAAACATGTGCTATTTGATATTCT
*
9489 AAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCGAGAAAGGGAAGTTTCAATGAACCTAT
1 AAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTAT
9554 CCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGAT
66 CCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGAT
9619 TTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGT
131 TTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGT
* * * *
9684 TAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCACGGGC
196 TAGAAGTCATATAGCAAGTACTTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGC
* * *
9749 GATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGATATCCTTGGCACGGTGATAAACGAGC
261 GATGTTGCTTCTATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGC
9814 ATTGCATGATGGGTTTTTAAAATCATTATTCATTCATCCATGGGAGAAGGAG
326 ATTGCATGATGGGTTTTT-AAATCATTATTCATTCATCCATGGGAGAAGGAG
9866 TATGAATTTG
Statistics
Matches: 1150, Mismatches: 40, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
814 23 0.02
815 1096 0.95
816 31 0.03
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (815 bp):
AAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGTTTCAATGAACCTAT
CCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTTGAT
TTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGT
TAGAAGTCATATAGCAAGTACTTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGC
GATGTTGCTTCTATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGC
ATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTAC
AATTGCCATCACACAAAGTACTTCAAGATTAACAACAACTAAAGAAAAACTTGGATGCAATGCAA
AAAGAACATTGAGAGTAAAAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAG
TGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACG
AGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATAAGCATGAGAGAAAATAATGTGAGGAGA
ATGAAGTTTGACCTCTATTAATCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTC
CAAAGGGCATGCAATTAAAATTTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACA
TTTGGTATTCCAAAACATGTGCTATTTGATATTCT
Found at i:10048 original size:232 final size:231
Alignment explanation
Indices: 9640--10096 Score: 806
Period size: 232 Copynumber: 2.0 Consensus size: 231
9630 TACTTCTAAC
9640 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
9705 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCACGGGCGATGTTGCTTCCATGAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCACGGGCGATGTTGCTTCCATGAATTCA
* *
9770 AGCCATCTACTTCTCGGATATCCTTGGCACGGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
131 AGCCATCTACTTCTCGGATATCATTGGCACGGTGATAAACGAGCATTGCATGATGGG-GTTTAAA
*
9835 ATCATTATTCATTCATCCATGGGAGAAGGAGTATGAA
195 ATCATTATTCATTCATCCATAGGAGAAGGAGTATGAA
* *
9872 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATATAGCTAGTAC
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
* * *
9937 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGGTTCCATGAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCACGGGCGATGTTGCTTCCATGAATTCA
* * *
10002 AGCCATCTACTTCTCGGATGTCATTGGCACTGTGATAAATGAGCATTGCATGATGGGGTTTAAAA
131 AGCCATCTACTTCTCGGATATCATTGGCACGGTGATAAACGAGCATTGCATGATGGGGTTTAAAA
10067 TCATTATTCATTCATCCATAGGAGAAGGAG
196 TCATTATTCATTCATCCATAGGAGAAGGAG
10097 AATCACGTTA
Statistics
Matches: 214, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
231 36 0.17
232 178 0.83
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (231 bp):
TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCACGGGCGATGTTGCTTCCATGAATTCA
AGCCATCTACTTCTCGGATATCATTGGCACGGTGATAAACGAGCATTGCATGATGGGGTTTAAAA
TCATTATTCATTCATCCATAGGAGAAGGAGTATGAA
Found at i:12934 original size:816 final size:815
Alignment explanation
Indices: 9872--19080 Score: 16397
Period size: 815 Copynumber: 11.3 Consensus size: 815
9862 GGAGTATGAA
* *
9872 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATATAGCTAGTAC
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
*
9937 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGGTTCCATGAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
* * * *
10002 AGCCATCTACTTCTCGGATGTCATTGGCACTGTGATAAATGAGCATTGCATGATGGGGTTTAAAA
131 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
*
10067 TCATTATTCATTCATCCATAGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
196 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
10132 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
261 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
10197 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGT
326 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGT
10262 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
391 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
* * * *
10327 ATTTCAAAAGGGACATGAGCATGATAGAAAATAATGAGAGGAGAATGAAGTTTGACATATATTAA
456 ATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
* *
10392 TCAATCTTTTCTTTATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAA
521 TCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTGCAAA
* *
10457 TTGATGAATCAAATTTATCCATTGAATTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTG
586 TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTG
*
10522 CTCTTTGATATTCTAAGTACGTTCATTCTACATTCATAGTT-AAACAATCTCAAGAAAGGGAAGT
651 CTCTTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGT
* *
10586 TTCAATGAACCTATCCAATGAGCACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATT
716 TTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATT
*
10651 TCATTTTATTTGATTTTGAATTATCTACTTCTAAC
781 TCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
* * *
10686 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGATGTGTTAGAAGTCATATAGCAAGTAC
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
* *
10751 TTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCTATGAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
10816 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
131 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
10881 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
196 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
10946 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
261 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
* *
11011 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAATCATGAATTT
326 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGT
11076 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
391 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
*
11141 ATTTCAAAAGGGACATAAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
456 ATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
* * * **
11206 TCAATCTTTTCTTTATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATTCAATTTCATT
521 TCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTGCAAA
11271 TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTG
586 TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTG
*
11336 CTATTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGT
651 CTCTTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGT
*
11401 TTCAATGAACCTATCCAATGTGGACCTTAAAAAAATAAATTCATTTATTCATGAAATTGATTATT
716 TTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATT
*
11466 TCATTTTCTTTGATTTTGAATTATCTACTTCTTAC
781 TCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
*
11501 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATATAGCAAGTAC
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
* *
11566 TTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCTATGAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
11631 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
131 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
* *
11696 TCATTTTTCATTCATCCATGGGAGAAGGATAATCACGTTAGTACAATTGCCATCACACAAAGTAC
196 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
* * * *
11761 TTCAAGATTAACAACAACTAAATAAAAACATGGATGCTATGCAAAAAGAACATTGAGAGTAAAAA
261 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
11826 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGT
326 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGT
* *
11891 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGATAGGAGTATGAAGAAGAGAA
391 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
11956 ATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
456 ATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
*
12021 TCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATT-AAAA
521 TCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTGCAAA
*
12085 TTTGATGAATCAAATTTGTCCATTGAGGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGT
586 -TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGT
* *
12150 GCTCTTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCGAGAAAAGGAAG
650 GCTCTTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAG
12215 TTTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTAT
715 TTTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTAT
12280 TTCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
780 TTCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
*
12316 TTTGCTTTATTATTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
* *
12381 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCACGGGCGATGTTGCTTCCATGAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
*
12446 AGCCATCTACTTCTCGGATATCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
131 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTT-AA
12511 ATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTA
195 ATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTA
*
12576 CTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACAGTGAGAGTAAAA
260 CTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAA
* *
12641 AAGGCATTTGGAGTAGTTGAAAATGAGAATACTGAAGAGATTGACTGTGAAGAAAACCATGAATG
325 AAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATG
*
12706 TGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGAATACGAGATGAGTATGAAGAAGAGA
390 TGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGA
* * * *
12771 AATTTCAGAAGGGACACGAGCATGATAGAAAATAATGAGAGGAGAATGAAGTTTGACCTCTATTA
455 AATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTA
*
12836 ATCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAA
520 ATCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTGCAA
12901 ATTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGT
585 ATTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGT
* *
12966 GCTATTTGATATTCTAAGTACGTTTCATTCTACATTCAAAGTTCAAATAATCTCAAGAAAGGGAA
650 GCTCTTTGATATTCTAAGTACG-TTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAA
* * *
13031 GTTTCAATAAACCTATCCAATGAGGACCTTAAACAAATAAATTTATTTATTCATGAAATTGATTA
714 GTTTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTA
*
13096 TTTCATTTTCTTTGATTTTGAATTATCTACTTATAAC
779 TTTCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
* *
13133 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGTGCAAGTAA
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
* * *
13198 TTACGCCCTTTTTAATTGGGAGATATGAAAATGAAGTCACGTGCGATGTTGCTTCCATGAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
* * *
13263 AGCCATCTACTTCTGGGATATCCTTGGCACTGTGATAAACGAGCATTGCATGATGGCTTTTTAAA
131 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTT-AA
13328 ATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTA
195 ATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTA
* *
13393 CTTTAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAGAGAACATTGAGAGTAAAA
260 CTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAA
*
13458 AAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGACTGTGAAGAAAACCATGAATG
325 AAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATG
13523 TGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGA
390 TGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGA
* * * *
13588 AATTTCAGAAGGGACATGAGCATGATAGAAAATAATGAGAGGAGAATGAAGTTTGACCTCTATCA
455 AATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTA
* *
13653 ATCAATCTTTTCTTTATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAA
520 ATCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTGCAA
13718 ATTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGT
585 ATTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGT
*
13783 GCTCTTTGATATTCTAAGTACGTTTCATTCTACATTCAAAGTTCAAATAATCTCAAGAAAGGGAA
650 GCTCTTTGATATTCTAAGTACG-TTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAA
*
13848 GTTTCAATAAACCTATCCAA--T-GACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTA
714 GTTTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTA
*
13910 TTTCATTTTCTTTGATTTTGAATTATCTACTTATAAC
779 TTTCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
* *
13947 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGTGCAAGTAA
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
* * *
14012 TTACGCCCTTTTTAATTGGGAGATATGAAGATCAAGTCATGTGCGATGTTGCTTCCATTAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
14077 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
131 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
14142 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
196 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
14207 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
261 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
*
14272 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATTT
326 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGT
*
14337 GAGAGTGGAACTCAATAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
391 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
14402 ATTTCAAAAGGGACAT-AGCAT--GAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
456 ATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
* * * *
14464 TCAATCTTTTCTTTATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATTCAATTTCAAT
521 TCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTGCAAA
14529 TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTG
586 TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTG
*
14594 CTCTTTGATATTCTAAGTACGTTTCATTCTACATTCAAAGTTCAAATAATCTCAAGAAAGGGAAG
651 CTCTTTGATATTCTAAGTACG-TTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAG
*
14659 TTTCAATAAACCTATCCAA--T-GACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTAT
715 TTTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTAT
*
14721 TTCATTTTCTTTGATTTTGAATTATCTACTTATAAC
780 TTCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
* *
14757 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGTGCAAGTAA
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
* * *
14822 TTACGCCCTTTTTAATTGGGAGATATGAAGATCAAGTCATGTGCGATGTTGCTTCCATTAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
14887 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
131 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
*
14952 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAACAATTGCCATCACACAAAGTAC
196 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
* * *
15017 TTCAAGATTAACAACAACTAAATAAAAACTTGGATGCTATGCAAAAAGAACATTGAGAGTAAAAA
261 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
*
15082 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGACTGTGAAGAAAACCATGAATGT
326 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGT
*
15147 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGAATACGAGATGAGTATGAAGAAGAGAA
391 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
* * * *
15212 ATTTCAGAAGGGACACGAGCATGATAGAAAATAATGAGAGGAGAATGAAGTTTGACCTCTATTAA
456 ATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
*
15277 TCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATT-AAAA
521 TCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTGCAAA
*
15341 TTTGATGAATCAAATTTGTCCATTGAGGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGT
586 -TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGT
* *
15406 GCTATTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCGAGAAAGGGAAG
650 GCTCTTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAG
15471 TTTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTAT
715 TTTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTAT
15536 TTCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
780 TTCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
15572 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
* *
15637 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCACGGGCGATGTTGCTTCCATGAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
* * *
15702 AGCCATCTACTTATCGGATATCCTTGGCACGGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
131 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTT-AA
15767 ATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTA
195 ATCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTA
15832 CTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAA
260 CTTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAA
* *
15897 AAGGCATTTGGAGTAGTTGAAAATGAGAATACTGAAGAGATTGACTGTGAAGAAAACCATGAATG
325 AAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATG
* *
15962 TGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGATAGGAGTATGAAGAAGAGA
390 TGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGA
16027 AATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTA
455 AATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTA
*
16092 ATCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATT-AAA
520 ATCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTGCAA
*
16156 ATTTGATGAATCAAATTTGTCCATTGAGGTTCCAAATGATTTAACATTTGGTATTCCAAAACATG
585 A-TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATG
* *
16221 TGCTATTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCGAGAAAGGGAA
649 TGCTCTTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAA
16286 GTTTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTA
714 GTTTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTA
16351 TTTCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
779 TTTCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
16388 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
*
16453 TTACGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
16518 AGCCATCTACTTCTCGGATGTCCTTGGCAC-GTGATAAACGAGCATTGCATGATGGGTTTTTAAA
131 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
* *
16582 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATCACACAAAGTAC
196 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
*
16647 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCTATGCAAAAAGAACATTGAGAGTAAAAA
261 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
*
16712 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATTT
326 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGT
*
16777 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGAGGAGTATGAAGAAGAGAA
391 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
16842 ATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
456 ATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
* *
16907 TCAATCTTTTCTT--TATTATTTCGTTTGATTTGCAGGTTATTCCAAA-GGCATGCTATTTC-AA
521 TCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTGCAAA
*
16968 TTGATGAATCAAATTT-TCCATTGAAGTTCCAAATGATTTAACGTTTGGTATTCCAAAACATGTG
586 TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTG
*
17032 CTCTTTGATA-T-TATGTACGTTCATTCTACATTCAAAG-TCAAACAATCTCAAGAAAGGGAAGT
651 CTCTTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGT
* *
17094 TTCAATGAACCTATCCAATGAGGACCTTAAATAAATAAATTCATTTATTCATGAAATTGATTATT
716 TTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATT
*
17159 TCA-TTTATTTGATTTTGAATTATCTACTTCT-AC
781 TCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
*
17192 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATATAGC-AGTAC
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
17256 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
*
17321 AGCCATCTACTTCTCGGATGT-CTTGGCACTGTGATAAATGAGCATTGCATGATGGG-TTTTAAA
131 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
17384 TCATTATTCATTCATCCAT-GGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
196 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
17448 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
261 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
17513 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGT
326 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGT
17578 GAGAGTGGAACTC-AAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
391 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
* *
17642 ATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGAGAGGAGAATGAAGTTTGACATCTATTAA
456 ATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
*
17707 TCAATCTTTTCTT-ATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCTATTGCAAA
521 TCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTGCAAA
* *
17771 TTGATGAATCAAATTTGTCCATTGAATTTCCAAATGATTTAACGTTTGGTATTCCAAAACATGTG
586 TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTG
17836 CTCTTTGATATTCTAAGTACGTTCATTCTACATTC--AGTT-AAACAATCTCAAGAAAGGGAAGT
651 CTCTTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGT
*
17898 TTCAATGAACCTATCCAATGAGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATT
716 TTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATT
* **
17963 TCATTTTATTTGATTTTGAATTATCTACTTCTTCC
781 TCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
* *
17998 TTTGCTTTAATTTTCAGAATGATGATTCGATGAAGATGATGAGTTAGAAGTCATAGAGCAAGTAC
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
**
18063 TTGTACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTT-CATGAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
18127 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
131 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
* *
18192 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGAATAATTGCCATCACACAAAGTAC
196 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
18257 TTCAAGATTAACAACAACTAAAG-AAAACTTTGATGC-ATGCAAAAAGAACATTGAGAGTAAAAA
261 TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
*
18320 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATTT
326 AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGT
*
18385 GAGAGTGGAACTC-AAAAGAACAAGAGTGTAAAGGGAGCATACGAGAGGA-TATGAAGAAGAGAA
391 GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
*
18448 ATTTC-AAAGGGACATAAGCATGAGAG-AAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
456 ATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
* *
18511 TCAATCTTTTCTT--TATTATTTCGTTTGATTTGCAGGTTATTCCAAA-GGCAT-CAATTTC-AT
521 TCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTGCAAA
18571 TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTG
586 TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTG
*
18636 CTATTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGT
651 CTCTTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGT
*
18701 TTCAATGAACCTATCCAA--TGGACCTTAAAAAAATAAATTCATTTATTCATGAAATTGATTATT
716 TTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATT
*
18764 TCATTTTCTTTGATTTTGAATTATCTACTTCTTAC
781 TCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
*
18799 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATATAGCAAGTAC
1 TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
* *
18864 TTGCACCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCTATGAATTCA
66 TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
18929 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
131 AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
* *
18994 TCATTTTTCATTCATCCATGGGAGAAGGATAATCACGTTAGTACAATTGCCATCACACAAAGTAC
196 TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
19059 TTCAAGATTAACAACAACTAAA
261 TTCAAGATTAACAACAACTAAA
19081 TAA
Statistics
Matches: 8121, Mismatches: 242, Indels: 76
0.96 0.03 0.01
Matches are distributed among these distances:
800 224 0.03
801 413 0.05
802 212 0.03
803 207 0.03
804 257 0.03
805 77 0.01
806 218 0.03
807 255 0.03
808 40 0.00
809 121 0.01
810 804 0.10
811 17 0.00
812 99 0.01
813 454 0.06
814 1262 0.16
815 1382 0.17
816 1221 0.15
817 858 0.11
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (815 bp):
TTTGCTTTATTTTTCAGAATGATGATTCGATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTAC
TTGCGCCCTTTTTAATTGGGAGATATGAAGATGAAGTCATGTGCGATGTTGCTTCCATGAATTCA
AGCCATCTACTTCTCGGATGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAA
TCATTATTCATTCATCCATGGGAGAAGGAGAATCACGTTAGTACAATTGCCATCACACAAAGTAC
TTCAAGATTAACAACAACTAAAGAAAAACTTTGATGCAATGCAAAAAGAACATTGAGAGTAAAAA
AGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGT
GAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGGGAGCATACGAGATGAGTATGAAGAAGAGAA
ATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGTGAGGAGAATGAAGTTTGACCTCTATTAA
TCAATCTTTTCTTCATATTATTTCGTTTGATTTGCAGGTTATTCCAAAGGGCATGCAATTGCAAA
TTGATGAATCAAATTTGTCCATTGAAGTTCCAAATGATTTAACATTTGGTATTCCAAAACATGTG
CTCTTTGATATTCTAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAGGGAAGT
TTCAATGAACCTATCCAATGTGGACCTTAAACAAATAAATTCATTTATTCATGAAATTGATTATT
TCATTTTCTTTGATTTTGAATTATCTACTTCTAAC
Done.